MGE detailed information
MGE type: Prophage MGE length: 68782 bp
Accession: NZ_CP046293 Location: 214262..283043 Organism: Yersinia intermedia strain FDAARGOS_730 Replicon: chromosome
Accession: NZ_CP046293 Location: 214262..283043 Organism: Yersinia intermedia strain FDAARGOS_730 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FOC38_RS00950 () | 209691..210197 | + | 507 | WP_005191489.1 | chorismate lyase | - |
| FOC38_RS00955 () | 210227..211096 | + | 870 | WP_042570072.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| FOC38_RS00960 () | 211171..213639 | - | 2469 | WP_005191487.1 | glycerol-3-phosphate 1-O-acyltransferase PlsB | - |
| FOC38_RS00965 () | 213766..214134 | + | 369 | WP_005191486.1 | diacylglycerol kinase | - |
| FOC38_RS00970 () | 214262..214870 | + | 609 | WP_005191485.1 | transcriptional repressor LexA | - |
| FOC38_RS00975 () | 215404..215613 | + | 210 | WP_005191484.1 | CsbD family protein | - |
| FOC38_RS00980 () | 216140..216649 | - | 510 | WP_032907679.1 | zinc uptake transcriptional repressor Zur | - |
| FOC38_RS00985 () | 217213..217527 | + | 315 | WP_050089038.1 | hypothetical protein | - |
| FOC38_RS00990 () | 217572..219158 | + | 1587 | WP_080985879.1 | hypothetical protein | - |
| FOC38_RS00995 () | 219235..219507 | - | 273 | WP_050089037.1 | pyocin activator PrtN family protein | - |
| FOC38_RS01000 () | 219562..219735 | - | 174 | Protein_193 | polyphosphate kinase | - |
| FOC38_RS01005 () | 220067..220699 | - | 633 | WP_155967481.1 | hypothetical protein | - |
| FOC38_RS01010 () | 220696..221019 | - | 324 | WP_155967483.1 | hypothetical protein | - |
| FOC38_RS01015 () | 221016..221426 | - | 411 | WP_053011688.1 | hypothetical protein | - |
| FOC38_RS01020 () | 221419..221853 | - | 435 | WP_155967485.1 | HNH endonuclease | - |
| FOC38_RS01025 () | 222335..222595 | - | 261 | Protein_198 | hypothetical protein | - |
| FOC38_RS01030 () | 222606..223118 | - | 513 | WP_155967487.1 | hypothetical protein | - |
| FOC38_RS01035 () | 223291..223821 | - | 531 | WP_155967489.1 | HD family hydrolase | - |
| FOC38_RS01040 () | 223913..224734 | - | 822 | WP_155967491.1 | DUF2303 family protein | - |
| FOC38_RS01045 () | 224782..225138 | - | 357 | WP_046050063.1 | hypothetical protein | - |
| FOC38_RS01050 () | 226364..227011 | - | 648 | WP_155967493.1 | helix-turn-helix domain-containing protein | - |
| FOC38_RS01055 () | 227113..227376 | + | 264 | WP_155967495.1 | cell division protein | - |
| FOC38_RS01060 () | 227369..227902 | + | 534 | WP_155967497.1 | DNA-binding protein | - |
| FOC38_RS01065 () | 228092..229192 | + | 1101 | WP_050882733.1 | hypothetical protein | - |
| FOC38_RS01070 () | 229189..230319 | + | 1131 | WP_155967499.1 | site-specific DNA-methyltransferase | - |
| FOC38_RS01075 () | 230338..231039 | + | 702 | WP_155967501.1 | phage antirepressor KilAC domain-containing protein | - |
| FOC38_RS01080 () | 231036..232037 | + | 1002 | WP_155967503.1 | DUF968 domain-containing protein | - |
| FOC38_RS01085 () | 232063..232716 | + | 654 | WP_196774707.1 | antitermination protein | - |
| FOC38_RS01090 () | 233054..233269 | + | 216 | WP_155967507.1 | hypothetical protein | - |
| FOC38_RS22660 () | 233322..233486 | - | 165 | WP_186368035.1 | hypothetical protein | - |
| FOC38_RS01095 () | 233488..233973 | - | 486 | WP_050879812.1 | hypothetical protein | - |
| FOC38_RS01100 () | 234260..234631 | + | 372 | WP_050074309.1 | phage holin family protein | - |
| FOC38_RS01105 () | 234628..234906 | + | 279 | WP_050074310.1 | phage holin family protein | - |
| FOC38_RS01110 () | 234903..235298 | + | 396 | WP_050074311.1 | M15 family metallopeptidase | - |
| FOC38_RS01115 () | 235295..235639 | + | 345 | WP_155967509.1 | DUF2570 domain-containing protein | - |
| FOC38_RS01120 () | 236037..236285 | + | 249 | WP_050074313.1 | hypothetical protein | - |
| FOC38_RS01125 () | 236382..236615 | + | 234 | WP_042569622.1 | DNA polymerase III subunit theta | - |
| FOC38_RS01130 () | 236931..237470 | + | 540 | WP_155967511.1 | DUF1441 family protein | - |
| FOC38_RS01135 () | 237470..239572 | + | 2103 | WP_005182509.1 | phage terminase large subunit family protein | - |
| FOC38_RS01140 () | 239569..239784 | + | 216 | WP_032905657.1 | hypothetical protein | - |
| FOC38_RS01145 () | 239784..241265 | + | 1482 | WP_155967513.1 | phage portal protein | - |
| FOC38_RS01150 () | 241306..243249 | + | 1944 | WP_155967966.1 | ATP-dependent Clp protease proteolytic subunit 1 | VF |
| FOC38_RS01155 () | 243332..243658 | + | 327 | WP_050310617.1 | DUF2190 family protein | - |
| FOC38_RS01160 () | 243651..243926 | + | 276 | WP_155967516.1 | DNA breaking-rejoining protein | - |
| FOC38_RS01165 () | 243938..244492 | + | 555 | WP_005182524.1 | phage tail protein | - |
| FOC38_RS01170 () | 244489..244893 | + | 405 | WP_087785208.1 | phage tail protein | - |
| FOC38_RS01175 () | 244954..245439 | + | 486 | WP_050074323.1 | hypothetical protein | - |
| FOC38_RS01180 () | 245455..245873 | + | 419 | Protein_230 | phage tail protein | - |
| FOC38_RS01185 () | 245873..246154 | + | 282 | WP_155967518.1 | DUF4035 domain-containing protein | - |
| FOC38_RS01190 () | 246189..249629 | + | 3441 | WP_155967520.1 | tape measure protein | - |
| FOC38_RS01195 () | 249626..249979 | + | 354 | WP_155967522.1 | phage tail protein | - |
| FOC38_RS01200 () | 249988..250743 | + | 756 | WP_050322316.1 | phage minor tail protein L | - |
| FOC38_RS01205 () | 250746..251459 | + | 714 | WP_087785213.1 | C40 family peptidase | - |
| FOC38_RS01210 () | 251491..251910 | + | 420 | WP_050322318.1 | hypothetical protein | - |
| FOC38_RS01215 () | 251955..252542 | + | 588 | WP_050322319.1 | tail assembly protein | - |
| FOC38_RS01220 () | 252600..256745 | + | 4146 | WP_196774708.1 | DUF1983 domain-containing protein | - |
| FOC38_RS01225 () | 256837..258210 | + | 1374 | WP_155967524.1 | hypothetical protein | - |
| FOC38_RS01230 () | 258210..258845 | + | 636 | WP_155967526.1 | tail fiber assembly protein | - |
| FOC38_RS01235 () | 258901..259146 | - | 246 | WP_155967528.1 | DinI-like family protein | - |
| FOC38_RS01240 () | 259157..259399 | - | 243 | WP_155967969.1 | hypothetical protein | - |
| FOC38_RS01245 () | 259756..260316 | + | 561 | WP_155967530.1 | SocA family protein | Antitoxin Detail |
| FOC38_RS01250 () | 260313..260720 | + | 408 | WP_155967532.1 | hypothetical protein | Toxin Detail |
| FOC38_RS01255 () | 260741..261829 | - | 1089 | WP_155967534.1 | hypothetical protein ; Integrase | Integrase |
| FOC38_RS01260 () | 261919..262968 | + | 1050 | WP_155967536.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| FOC38_RS01265 () | 263283..263501 | + | 219 | WP_005191465.1 | envelope stress response protein PspG | - |
| FOC38_RS01270 () | 263791..264774 | - | 984 | WP_005191463.1 | Quinone oxidoreductase 1 | VF |
| FOC38_RS01275 () | 265057..266463 | + | 1407 | WP_005191462.1 | replicative DNA helicase | - |
| FOC38_RS01280 () | 266591..267670 | + | 1080 | WP_005191461.1 | alanine racemase | - |
| FOC38_RS01285 () | 267724..268917 | + | 1194 | WP_005191460.1 | aspartate/tyrosine/aromatic aminotransferase | - |
| FOC38_RS01290 () | 269268..269621 | + | 354 | WP_032907677.1 | MmcQ/YjbR family DNA-binding protein | - |
| FOC38_RS01295 () | 269760..272591 | - | 2832 | WP_005191457.1 | UvrABC system protein A | VF |
| FOC38_RS01300 () | 272992..273540 | + | 549 | WP_005191456.1 | single-stranded DNA-binding protein SSB1 | - |
| FOC38_RS01305 () | 273844..275172 | - | 1329 | WP_155967538.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| FOC38_RS01310 () | 275174..275473 | - | 300 | WP_005191449.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| FOC38_RS01315 () | 275744..276412 | + | 669 | WP_005191448.1 | glutathione S-transferase | - |
| FOC38_RS01320 () | 276783..278150 | + | 1368 | WP_005191447.1 | NCS2 family permease | - |
| FOC38_RS01325 () | 278369..280018 | + | 1650 | WP_005191446.1 | Na+/H+ antiporter | - |
| FOC38_RS01330 () | 280066..280950 | - | 885 | WP_032907674.1 | LysR family transcriptional regulator | - |
| FOC38_RS01335 () | 281094..281519 | + | 426 | WP_032907671.1 | CidA/LrgA family protein | - |
| FOC38_RS01340 () | 281512..282201 | + | 690 | WP_053011709.1 | LrgB family protein | - |
| FOC38_RS01345 () | 282282..283007 | - | 726 | WP_170930747.1 | Glutamine transport ATP-binding protein GlnQ | VF |
| FOC38_RS01350 () | 283052..284161 | - | 1110 | WP_005191435.1 | amino acid ABC transporter permease | - |
| FOC38_RS01355 () | 284171..285349 | - | 1179 | WP_005191434.1 | amino acid ABC transporter permease | - |
| FOC38_RS01360 () | 285414..286439 | - | 1026 | WP_005191430.1 | amino acid ABC transporter substrate-binding protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|