MGE detailed information
MGE type: Conjugative plasmid MGE length: 108424 bp
Accession: NZ_CP046260 Location: 1..108424 Organism: Escherichia coli strain ECO2947 Replicon: plasmid p2974-D
Accession: NZ_CP046260 Location: 1..108424 Organism: Escherichia coli strain ECO2947 Replicon: plasmid p2974-D
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GK046_RS23655 () | 551..835 | + | 285 | WP_062894229.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| GK046_RS23660 () | 835..1110 | + | 276 | WP_063073486.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| GK046_RS23665 () | 1377..1817 | - | 441 | Protein_2 | IS91 family transposase ISSbo1 | Transposase |
| GK046_RS23670 () | 1850..3601 | - | 1752 | Protein_3 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| GK046_RS23675 () | 3590..3997 | + | 408 | WP_001214976.1 | cysteine hydrolase | - |
| GK046_RS23680 () | 4135..5019 | + | 885 | WP_000058717.1 | EamA family transporter | - |
| GK046_RS23685 () | 5051..6250 | - | 1200 | WP_025732387.1 | tetracycline efflux MFS transporter Tet(A) | - |
| GK046_RS23690 () | 6356..7006 | + | 651 | WP_001493764.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| GK046_RS23695 () | 7038..7280 | - | 243 | WP_000844627.1 | transposase | - |
| GK046_RS23700 () | 7398..7988 | + | 591 | WP_012477564.1 | plasmid pRiA4b ORF-3 family protein | - |
| GK046_RS23705 () | 8125..8697 | + | 573 | WP_001493762.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| GK046_RS23710 () | 8734..10125 | + | 1392 | WP_001493761.1 | ISKra4 family transposase ISKpn19 | Transposase |
| GK046_RS23715 () | 10158..10586 | + | 429 | Protein_12 | Tn3 family transposase TnpR_ISMex22 | Transposase |
| GK046_RS23720 () | 10905..11561 | - | 657 | WP_001516695.1 | Pentapeptide repeat protein | ARG |
| GK046_RS23725 () | 11956..12572 | + | 617 | Protein_14 | transposase | - |
| GK046_RS23730 () | 12639..13343 | + | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| GK046_RS23735 () | 13945..14382 | + | 438 | Protein_16 | GNAT family N-acetyltransferase | - |
| GK046_RS23740 () | 14313..15512 | - | 1200 | WP_025732387.1 | tetracycline efflux MFS transporter Tet(A) | - |
| GK046_RS23745 () | 15618..16244 | + | 627 | WP_031606906.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| GK046_RS23750 () | 16276..16518 | - | 243 | WP_000844627.1 | transposase | - |
| GK046_RS23760 () | 16905..17741 | - | 837 | WP_000480968.1 | hypothetical protein | ARG |
| GK046_RS23765 () | 17741..18544 | - | 804 | WP_001082319.1 | Aminoglycoside 3'-phosphotransferase | ARG |
| GK046_RS23770 () | 18605..19420 | - | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| GK046_RS23780 () | 19750..19926 | + | 177 | WP_000954592.1 | Arm DNA-binding domain-containing protein | - |
| GK046_RS23785 () | 20108..20851 | - | 744 | Protein_24 | IS110 family transposase IS5075 | Transposase |
| GK046_RS23790 () | 20903..21607 | - | 705 | WP_001067855.1 | Methyl-accepting chemotaxis protein McpQ | VF |
| GK046_RS23795 () | 21671..21922 | + | 252 | Protein_26 | Methyl-accepting chemotaxis protein McpQ | VF |
| GK046_RS23800 () | 22313..22625 | - | 313 | Protein_27 | IS66 family insertion sequence element accessory protein TnpB | - |
| GK046_RS23810 () | 24476..25612 | + | 1137 | WP_033804283.1 | Outer membrane porin protein OmpD | VF |
| GK046_RS23815 () | 25708..27405 | + | 1698 | WP_000401034.1 | sulfatase | - |
| GK046_RS23820 () | 27474..27731 | + | 258 | WP_001032733.1 | hypothetical protein | - |
| GK046_RS23825 () | 27990..28687 | + | 698 | Protein_32 | IS1 family transposase IS1G | Transposase |
| GK046_RS23835 () | 30056..30790 | + | 735 | Protein_34 | IS66 family transposase ISEc8 | Transposase |
| GK046_RS23840 () | 30825..31514 | + | 690 | Protein_35 | IS3 family transposase ISEhe3 | Transposase |
| GK046_RS23845 () | 31692..35768 | - | 4077 | WP_063073396.1 | Serine protease SepA autotransporter | VF |
| GK046_RS23850 () | 35945..37128 | + | 1184 | Protein_37 | IS3 family transposase ISEhe3 | Transposase |
| GK046_RS23855 () | 37427..37717 | + | 291 | WP_000990619.1 | hypothetical protein | - |
| GK046_RS23860 () | 38534..38752 | + | 219 | WP_000813639.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| GK046_RS23865 () | 38754..39059 | + | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| GK046_RS23870 () | 39060..39866 | + | 807 | WP_032332905.1 | site-specific integrase | - |
| GK046_RS23875 () | 40653..41408 | + | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| GK046_RS23880 () | 41996..43162 | + | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| GK046_RS23885 () | 43162..44133 | + | 972 | WP_032248840.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| GK046_RS23890 () | 44785..45687 | + | 903 | WP_122990549.1 | DUF1281 domain-containing protein | - |
| GK046_RS23895 () | 45691..45996 | + | 306 | WP_033804376.1 | hypothetical protein | - |
| GK046_RS23900 () | 46073..46756 | + | 684 | WP_032332811.1 | DNA methylase | - |
| GK046_RS23905 () | 46757..46978 | + | 222 | WP_032332810.1 | hypothetical protein | - |
| GK046_RS23910 () | 46991..47425 | + | 435 | WP_033804380.1 | DUF1380 family protein | - |
| GK046_RS23915 () | 47471..48247 | + | 777 | WP_113449533.1 | hypothetical protein | - |
| GK046_RS23920 () | 48321..49433 | + | 1113 | WP_001300563.1 | IS4 family transposase IS421 | Transposase |
| GK046_RS23930 () | 50133..50435 | + | 303 | WP_001671341.1 | antirestriction protein | - |
| GK046_RS23935 () | 50482..50904 | + | 423 | WP_032332488.1 | DUF1380 family protein | - |
| GK046_RS23940 () | 50901..51092 | + | 192 | WP_001027500.1 | hypothetical protein | - |
| GK046_RS23945 () | 51364..51612 | - | 249 | WP_155430338.1 | hypothetical protein | - |
| GK046_RS23950 () | 52130..52360 | + | 231 | WP_000218642.1 | hypothetical protein | - |
| GK046_RS23955 () | 52412..53773 | + | 1362 | WP_000170675.1 | DUF3560 domain-containing protein | - |
| GK046_RS23960 () | 53821..54384 | + | 564 | WP_001377760.1 | class I SAM-dependent methyltransferase | - |
| GK046_RS23965 () | 55272..55724 | + | 453 | WP_000290842.1 | single-stranded DNA-binding protein | - |
| GK046_RS23970 () | 55786..56019 | + | 234 | WP_000006030.1 | DUF905 family protein | - |
| GK046_RS23975 () | 56084..58042 | + | 1959 | WP_063072993.1 | ParB/RepB/Spo0J family partition protein | - |
| GK046_RS23980 () | 58097..58531 | + | 435 | WP_000845907.1 | conjugation system SOS inhibitor PsiB | - |
| GK046_RS23985 () | 58528..59247 | + | 720 | WP_001276240.1 | plasmid SOS inhibition protein A | - |
| GK046_RS23990 () | 59259..59447 | - | 189 | WP_001299721.1 | hypothetical protein | - |
| - () | 59259..59483 | + | 225 | NuclAT_0 | - | - |
| - () | 59259..59483 | + | 225 | NuclAT_0 | - | - |
| - () | 59259..59483 | + | 225 | NuclAT_0 | - | - |
| - () | 59259..59483 | + | 225 | NuclAT_0 | - | - |
| - () | 59416..59481 | + | 66 | - | - | Antitoxin Detail |
| GK046_RS23995 () | 59527..59685 | + | 159 | WP_001312861.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| GK046_RS24820 () | 60376..60582 | + | 207 | WP_033804333.1 | hypothetical protein | - |
| GK046_RS24010 () | 60607..60894 | + | 288 | WP_000107535.1 | hypothetical protein | - |
| GK046_RS24015 () | 61014..61835 | + | 822 | WP_001241365.1 | DUF945 domain-containing protein | - |
| GK046_RS24020 () | 62132..62734 | - | 603 | WP_000243705.1 | hypothetical protein | VF |
| GK046_RS24025 () | 63055..63438 | + | 384 | WP_001151524.1 | relaxosome protein TraM | - |
| GK046_RS24030 () | 63625..64314 | + | 690 | WP_000283379.1 | conjugal transfer transcriptional regulator TraJ | - |
| GK046_RS24035 () | 64413..64808 | + | 396 | WP_001309237.1 | conjugal transfer relaxosome protein TraY | - |
| GK046_RS24040 () | 64841..65206 | + | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| GK046_RS24045 () | 65221..65532 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| GK046_RS24050 () | 65554..65988 | + | 435 | Protein_75 | type IV conjugative transfer system protein TraE | - |
| GK046_RS24055 () | 66003..66700 | - | 698 | Protein_76 | IS1 family transposase IS1S | Transposase |
| GK046_RS24060 () | 66757..68706 | + | 1950 | Protein_77 | type IV conjugative transfer system coupling protein TraD | - |
| GK046_RS24065 () | 68706..73101 | + | 4396 | Protein_78 | Multifunctional conjugation protein TraI | Relaxase |
| GK046_RS24070 () | 73121..73867 | + | 747 | WP_000205715.1 | conjugal transfer pilus acetylase TraX | - |
| GK046_RS24075 () | 73926..74786 | + | 861 | WP_000704529.1 | putative protein YcjY | VF |
| GK046_RS24080 () | 74889..75449 | + | 561 | WP_000139323.1 | fertility inhibition protein FinO | - |
| GK046_RS24085 () | 75599..75979 | + | 381 | WP_136669646.1 | IS66 family transposase ISEc8 | Transposase |
| GK046_RS24090 () | 75976..76323 | + | 348 | WP_000612591.1 | IS66 family transposase ISEc8 | Transposase |
| GK046_RS24095 () | 76373..77911 | + | 1539 | WP_053888474.1 | IS66 family transposase ISEc8 | Transposase |
| GK046_RS24100 () | 77974..78123 | - | 150 | Protein_85 | IS3 family transposase | - |
| GK046_RS24105 () | 78215..79213 | - | 999 | WP_077629919.1 | Lipid A biosynthesis myristoyltransferase | VF |
| GK046_RS24110 () | 79287..81008 | - | 1722 | WP_000550559.1 | phosphoethanolamine transferase CptA | - |
| GK046_RS24115 () | 81102..82208 | - | 1107 | WP_000975743.1 | glycosyltransferase family 4 protein | - |
| GK046_RS24120 () | 82208..83029 | - | 822 | WP_001302199.1 | polysaccharide deacetylase family protein | - |
| GK046_RS24125 () | 83296..83517 | - | 222 | WP_000907893.1 | hypothetical protein | - |
| GK046_RS24140 () | 85811..86200 | - | 390 | WP_001172748.1 | cytochrome b562 family protein | - |
| GK046_RS24145 () | 86244..88454 | - | 2211 | WP_000592771.1 | Catalase-peroxidase | VF |
| GK046_RS24150 () | 88633..89846 | + | 1214 | WP_162829241.1 | IS3 family transposase IS629 | Transposase |
| GK046_RS24825 () | 89884..90369 | + | 486 | Protein_95 | IS3 family transposase IS3 | Transposase |
| GK046_RS24160 () | 90919..93579 | + | 2661 | WP_000770132.1 | Metalloprotease StcE | VF |
| GK046_RS24165 () | 93663..94538 | + | 876 | WP_001368871.1 | Type II secretion system protein C | VF |
| GK046_RS24170 () | 94539..96509 | + | 1971 | WP_013009342.1 | Type II secretion system protein D | VF |
| GK046_RS24175 () | 96506..98008 | + | 1503 | WP_001418198.1 | Type II secretion system protein E | VF |
| GK046_RS24180 () | 98010..99233 | + | 1224 | WP_001173149.1 | Type II secretion system protein F | VF |
| GK046_RS24185 () | 99264..99698 | + | 435 | WP_001231213.1 | Type II secretion system protein G | VF |
| GK046_RS24190 () | 99695..100246 | + | 552 | WP_000082928.1 | type II secretion system minor pseudopilin GspH | - |
| GK046_RS24195 () | 100261..100608 | + | 348 | WP_001420206.1 | Type II secretion system protein I | VF |
| GK046_RS24200 () | 100605..101204 | + | 600 | WP_000082784.1 | Type II secretion system protein J | VF |
| GK046_RS24205 () | 101201..102178 | + | 978 | WP_000842183.1 | Putative type II secretion system protein K | VF |
| GK046_RS24210 () | 102217..103389 | + | 1173 | WP_071526091.1 | Type II secretion system protein L | VF |
| GK046_RS24215 () | 103376..103891 | + | 516 | WP_000998852.1 | Type II secretion system protein M | VF |
| GK046_RS24220 () | 103943..104776 | + | 834 | WP_000088802.1 | Type 4 prepilin-like proteins leader peptide-processing enzyme | VF |
| GK046_RS24225 () | 104870..105271 | + | 402 | WP_001222320.1 | GspS family T2SS pilot lipoprotein variant EptO | - |
| GK046_RS24230 () | 105346..105561 | + | 216 | Protein_110 | IS3 family transposase IS1203 | Transposase |
| GK046_RS24830 () | 105860..106153 | + | 294 | Protein_111 | hypothetical protein | - |
| GK046_RS24240 () | 106382..106507 | + | 126 | Protein_112 | replication protein | - |
| GK046_RS24250 () | 107818..107943 | + | 126 | Protein_114 | replication protein | - |
| GK046_RS24835 () | 107966..108073 | + | 108 | Protein_115 | incFII family plasmid replication initiator RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|