MGE detailed information
MGE type: Conjugative plasmid MGE length: 51521 bp
Accession: NZ_CP046036 Location: 1..51521 Organism: Pseudomonas coronafaciens pv. oryzae str. 1_6 Replicon: plasmid pPor1_6
Accession: NZ_CP046036 Location: 1..51521 Organism: Pseudomonas coronafaciens pv. oryzae str. 1_6 Replicon: plasmid pPor1_6
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| POR16_RS25820 () | 1..1314 | + | 1314 | WP_003436848.1 | replication initiation protein | - |
| POR16_RS25825 () | 1453..1878 | + | 426 | WP_003436849.1 | S24 family peptidase | - |
| POR16_RS25830 () | 1871..2228 | + | 358 | Protein_2 | RulB protein | - |
| POR16_RS25835 () | 2438..5128 | - | 2691 | WP_003436852.1 | AAA family ATPase | - |
| POR16_RS25840 () | 5526..6494 | + | 969 | Protein_4 | Y-family DNA polymerase | - |
| POR16_RS25845 () | 6954..7205 | - | 252 | WP_003436856.1 | ribbon-helix-helix protein, CopG family | - |
| POR16_RS25850 () | 7291..7947 | - | 657 | WP_003436858.1 | AAA family ATPase | - |
| POR16_RS25855 () | 8278..8547 | + | 270 | WP_050558001.1 | hypothetical protein | - |
| POR16_RS25860 () | 8784..9332 | - | 549 | WP_003436860.1 | hypothetical protein | - |
| POR16_RS25865 () | 9488..10129 | + | 642 | WP_003436862.1 | SOS response-associated peptidase | - |
| POR16_RS25870 () | 11065..11319 | + | 255 | WP_003436866.1 | hypothetical protein | - |
| POR16_RS25875 () | 11316..11663 | + | 348 | WP_003436868.1 | type II toxin-antitoxin system ChpB family toxin | - |
| POR16_RS25880 () | 11680..11931 | + | 252 | WP_003436870.1 | hypothetical protein | - |
| POR16_RS25885 () | 12010..12489 | - | 480 | WP_050558000.1 | hypothetical protein | - |
| POR16_RS25890 () | 12564..12842 | + | 279 | WP_003436873.1 | hypothetical protein | - |
| POR16_RS25895 () | 12860..14896 | - | 2037 | WP_003436874.1 | Methyl-accepting chemotaxis protein McpQ | VF |
| POR16_RS25900 () | 15114..16264 | + | 1151 | WP_096133376.1 | IS3 family transposase ISPsy29 | Transposase |
| POR16_RS25905 () | 16221..16685 | - | 465 | Protein_17 | Anaerobic nitric oxide reductase transcription regulator NorR | VF |
| POR16_RS25910 () | 17093..18004 | + | 912 | WP_003436770.1 | alpha/beta hydrolase | - |
| POR16_RS25915 () | 18188..18646 | - | 459 | WP_032610010.1 | helix-turn-helix transcriptional regulator | - |
| POR16_RS25920 () | 18743..19690 | + | 948 | WP_003436783.1 | aromatic alcohol reductase | - |
| POR16_RS25925 () | 20102..20365 | + | 264 | Protein_21 | Mov34/MPN/PAD-1 family protein | - |
| POR16_RS25930 () | 20466..21428 | - | 963 | WP_003436787.1 | tyrosine-type recombinase/integrase | - |
| POR16_RS25935 () | 21760..22008 | + | 249 | WP_003436790.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| POR16_RS25940 () | 22021..22371 | + | 351 | WP_003436792.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| POR16_RS25945 () | 22474..23247 | - | 774 | WP_003436798.1 | Oxygen regulatory protein NreC | VF |
| POR16_RS25950 () | 23356..24456 | + | 1101 | WP_003436801.1 | polyamine ABC transporter substrate-binding protein | - |
| POR16_RS25955 () | 24555..24752 | + | 198 | WP_003436803.1 | hypothetical protein | - |
| POR16_RS25960 () | 24764..25159 | - | 396 | WP_003436805.1 | helix-turn-helix domain-containing protein | - |
| POR16_RS25965 () | 25374..25886 | + | 513 | WP_003436807.1 | hypothetical protein | - |
| POR16_RS25970 () | 25975..26217 | + | 243 | WP_003436809.1 | hypothetical protein | - |
| POR16_RS25975 () | 26230..26937 | + | 708 | WP_003436811.1 | Type IV secretion system protein virB1 | VF |
| POR16_RS25980 () | 26937..27272 | + | 336 | WP_003407111.1 | hypothetical protein | - |
| POR16_RS25985 () | 27285..27686 | + | 402 | Protein_33 | VirB3 family type IV secretion system protein | - |
| POR16_RS25990 () | 27622..30174 | + | 2553 | WP_003436815.1 | VirB4 family type IV secretion system protein | - |
| POR16_RS25995 () | 30171..30857 | + | 687 | WP_005892632.1 | P-type DNA transfer protein VirB5 | - |
| POR16_RS26000 () | 30890..31243 | + | 354 | WP_003436819.1 | hypothetical protein | - |
| POR16_RS26005 () | 31254..32186 | + | 933 | WP_003436821.1 | type IV secretion system protein | - |
| POR16_RS26010 () | 32254..32556 | + | 303 | WP_003436825.1 | hypothetical protein | - |
| POR16_RS26015 () | 32594..33382 | + | 789 | WP_003436826.1 | type IV secretion system protein | - |
| POR16_RS26020 () | 33372..34181 | + | 810 | WP_003436827.1 | P-type conjugative transfer protein VirB9 | - |
| POR16_RS26025 () | 34168..35538 | + | 1371 | WP_003436828.1 | Type IV secretion system protein virB10 | VF |
| POR16_RS26030 () | 35548..36579 | + | 1032 | WP_003436829.1 | Type IV secretion system protein VirB11 | VF |
| POR16_RS26035 () | 36589..36945 | + | 357 | WP_003436831.1 | hypothetical protein | - |
| POR16_RS26040 () | 37072..37293 | + | 222 | WP_003436832.1 | hypothetical protein | - |
| POR16_RS26045 () | 37293..38945 | + | 1653 | WP_003436833.1 | type IV secretory system conjugative DNA transfer family protein | - |
| POR16_RS26050 () | 38985..39347 | + | 363 | WP_003436834.1 | Killer protein | - |
| POR16_RS26055 () | 39375..41540 | + | 2166 | WP_003436835.1 | type IA DNA topoisomerase | - |
| POR16_RS26060 () | 41567..42334 | + | 768 | WP_003436836.1 | hypothetical protein | - |
| POR16_RS26065 () | 42399..43004 | + | 606 | WP_003436837.1 | single-stranded DNA-binding protein | - |
| POR16_RS26070 () | 43310..44044 | + | 735 | WP_003436838.1 | hypothetical protein | - |
| POR16_RS26075 () | 44041..44613 | + | 573 | WP_003436840.1 | hypothetical protein | - |
| POR16_RS26080 () | 44636..45175 | - | 540 | WP_003436841.1 | hypothetical protein | - |
| POR16_RS26085 () | 45400..46125 | + | 726 | WP_003436842.1 | hypothetical protein | - |
| POR16_RS26090 () | 46115..49852 | + | 3738 | WP_080053558.1 | hypothetical protein | Relaxase |
| POR16_RS26095 () | 49982..50632 | + | 651 | WP_003407061.1 | AAA family ATPase | - |
| POR16_RS26100 () | 50623..50976 | + | 354 | WP_003436847.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|