MGE detailed information
MGE type: Prophage MGE length: 87742 bp
Accession: NZ_CP045840 Location: 2017388..2105129 Organism: Citrobacter sp. S40-1-2 Replicon: chromosome
Accession: NZ_CP045840 Location: 2017388..2105129 Organism: Citrobacter sp. S40-1-2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GHC23_RS09565 () | 2013142..2014914 | + | 1773 | WP_003833841.1 | aspartate--tRNA ligase | - |
| GHC23_RS09570 () | 2014916..2015359 | + | 444 | WP_003034863.1 | dihydroneopterin triphosphate diphosphatase | - |
| GHC23_RS09575 () | 2015388..2016131 | + | 744 | WP_003833836.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| GHC23_RS09580 () | 2016166..2016687 | + | 522 | WP_003034867.1 | crossover junction endodeoxyribonuclease RuvC | - |
| GHC23_RS09585 () | 2016768..2017379 | + | 612 | WP_003034869.1 | Holliday junction branch migration protein RuvA | - |
| GHC23_RS09590 () | 2017388..2018398 | + | 1011 | WP_003034872.1 | Holliday junction branch migration DNA helicase RuvB | - |
| GHC23_RS09595 () | 2018477..2019262 | - | 786 | WP_003034874.1 | hypothetical protein | VF |
| GHC23_RS09600 () | 2019259..2020014 | - | 756 | WP_003833829.1 | hypothetical protein | VF |
| GHC23_RS09605 () | 2020093..2021037 | + | 945 | WP_153752793.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| GHC23_RS09610 () | 2021053..2022372 | + | 1320 | WP_003833825.1 | murein DD-endopeptidase MepM | - |
| GHC23_RS09615 () | 2022492..2023463 | + | 972 | WP_020996628.1 | hypothetical protein | VF |
| GHC23_RS09620 () | 2023510..2024952 | - | 1443 | WP_003034890.1 | pyruvate kinase | - |
| GHC23_RS09625 () | 2025072..2025941 | - | 870 | WP_153753969.1 | MurR/RpiR family transcriptional regulator | - |
| GHC23_RS09630 () | 2026306..2027781 | + | 1476 | WP_003833817.1 | glucose-6-phosphate dehydrogenase | - |
| GHC23_RS09635 () | 2028015..2029826 | + | 1812 | WP_153752795.1 | phosphogluconate dehydratase | - |
| GHC23_RS09640 () | 2029861..2030502 | + | 642 | WP_003034901.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| GHC23_RS09645 () | 2030570..2031748 | - | 1179 | WP_153752797.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| GHC23_RS09650 () | 2031881..2032171 | + | 291 | WP_032943780.1 | DNA damage-inducible protein YebG | - |
| GHC23_RS09655 () | 2032293..2032646 | + | 354 | WP_153752799.1 | protein YebF | - |
| GHC23_RS09660 () | 2032741..2033400 | + | 660 | WP_003833804.1 | tellurite resistance TerB family protein | - |
| GHC23_RS09665 () | 2033487..2035541 | + | 2055 | WP_194841961.1 | oligopeptidase B | - |
| GHC23_RS09670 () | 2035532..2036194 | - | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
| GHC23_RS09675 () | 2036218..2036874 | - | 657 | WP_008785043.1 | carbon-nitrogen hydrolase family protein | - |
| GHC23_RS09680 () | 2036981..2037211 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| GHC23_RS09685 () | 2037360..2039111 | + | 1752 | WP_003844143.1 | hypothetical protein ; Integrase | Integrase |
| GHC23_RS09690 () | 2039529..2040254 | + | 726 | WP_153752803.1 | inovirus-type Gp2 protein | - |
| GHC23_RS09695 () | 2040561..2041139 | - | 579 | WP_153752162.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| GHC23_RS09700 () | 2041493..2042395 | - | 903 | WP_003844140.1 | diguanylate cyclase | - |
| GHC23_RS09705 () | 2042713..2042904 | - | 192 | WP_008322661.1 | hypothetical protein | - |
| GHC23_RS09710 () | 2043397..2043987 | - | 591 | WP_032939142.1 | hypothetical protein | - |
| GHC23_RS09720 () | 2044610..2044984 | + | 375 | WP_153752805.1 | CopC domain-containing protein YobA | - |
| GHC23_RS09725 () | 2044988..2045860 | + | 873 | WP_008785042.1 | copper homeostasis membrane protein CopD | - |
| GHC23_RS09730 () | 2045881..2046219 | + | 339 | WP_003833793.1 | YebY family protein | - |
| - () | 2046340..2046483 | - | 144 | - | - | Antitoxin Detail |
| - () | 2046375..2046478 | + | 104 | - | - | Toxin Detail |
| GHC23_RS09735 () | 2046556..2047641 | - | 1086 | WP_153752806.1 | hypothetical protein ; Integrase | Integrase |
| GHC23_RS09740 () | 2047610..2047882 | - | 273 | WP_016156226.1 | hypothetical protein | - |
| GHC23_RS09745 () | 2047947..2048189 | - | 243 | WP_003841647.1 | DUF4060 family protein | - |
| GHC23_RS09750 () | 2048176..2048379 | - | 204 | WP_153752808.1 | hypothetical protein | - |
| GHC23_RS09755 () | 2048372..2048716 | - | 345 | WP_153752810.1 | hypothetical protein | - |
| GHC23_RS09760 () | 2048751..2049791 | - | 1041 | WP_153752812.1 | recombinase RecT | - |
| GHC23_RS09765 () | 2049805..2052360 | - | 2556 | WP_153752813.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| GHC23_RS24565 () | 2052500..2052661 | - | 162 | WP_194841962.1 | hypothetical protein | - |
| GHC23_RS09770 () | 2052673..2052879 | - | 207 | WP_001568763.1 | hypothetical protein | - |
| GHC23_RS09775 () | 2053231..2054382 | - | 1152 | WP_086523735.1 | type I restriction enzyme HsdR N-terminal domain-containing protein | - |
| GHC23_RS09780 () | 2054404..2055105 | - | 702 | WP_162873151.1 | helix-turn-helix transcriptional regulator | - |
| GHC23_RS09785 () | 2055215..2055433 | + | 219 | WP_086523734.1 | helix-turn-helix domain-containing protein | - |
| GHC23_RS09790 () | 2055463..2056002 | + | 540 | WP_153752815.1 | toxin YdaT domain-containing protein | - |
| GHC23_RS09795 () | 2056086..2056277 | + | 192 | WP_153753970.1 | hypothetical protein | - |
| GHC23_RS09800 () | 2056294..2057184 | + | 891 | WP_194841963.1 | hypothetical protein | - |
| GHC23_RS09805 () | 2057187..2057936 | + | 750 | WP_153752817.1 | ATP-binding protein | - |
| GHC23_RS09810 () | 2057955..2058266 | + | 312 | WP_153752819.1 | hypothetical protein | - |
| GHC23_RS09815 () | 2058353..2058661 | + | 309 | Protein_1919 | ead/Ea22-like family protein | - |
| GHC23_RS09820 () | 2058672..2059184 | + | 513 | WP_153753972.1 | hypothetical protein | - |
| GHC23_RS09825 () | 2059343..2059525 | + | 183 | Protein_1921 | DUF551 domain-containing protein | - |
| GHC23_RS09830 () | 2060078..2060335 | + | 258 | WP_153752820.1 | hypothetical protein | - |
| GHC23_RS09835 () | 2060410..2060625 | + | 216 | Protein_1923 | DNA cytosine methyltransferase | - |
| GHC23_RS09840 () | 2060756..2060956 | + | 201 | WP_153752821.1 | hypothetical protein | - |
| GHC23_RS09845 () | 2061055..2061657 | + | 603 | WP_153752822.1 | DUF1367 family protein | - |
| GHC23_RS09850 () | 2061657..2061863 | + | 207 | WP_153752823.1 | hypothetical protein | - |
| GHC23_RS09855 () | 2061866..2062474 | + | 609 | WP_103848778.1 | recombination protein NinG | - |
| GHC23_RS09860 () | 2062471..2062611 | + | 141 | WP_001568781.1 | YlcG family protein | - |
| GHC23_RS09865 () | 2062608..2063438 | + | 831 | WP_057064561.1 | antitermination protein | - |
| GHC23_RS09870 () | 2063941..2064219 | + | 279 | WP_001568784.1 | holin | - |
| GHC23_RS09875 () | 2064197..2064694 | + | 498 | WP_194841969.1 | lysozyme | - |
| GHC23_RS09880 () | 2064783..2065325 | + | 543 | WP_153752825.1 | hypothetical protein | - |
| GHC23_RS09885 () | 2065450..2065623 | + | 174 | WP_153752826.1 | hypothetical protein | - |
| GHC23_RS09890 () | 2065638..2066366 | + | 729 | WP_103284338.1 | Fur-regulated protein | - |
| GHC23_RS09895 () | 2066617..2067162 | + | 546 | WP_127791704.1 | terminase small subunit | - |
| GHC23_RS09900 () | 2067137..2069059 | + | 1923 | WP_153752828.1 | phage terminase large subunit family protein | - |
| GHC23_RS09905 () | 2069059..2069265 | + | 207 | WP_153752830.1 | gpW family protein | - |
| GHC23_RS09910 () | 2069262..2070854 | + | 1593 | WP_003826190.1 | phage portal protein | - |
| GHC23_RS09915 () | 2070835..2072172 | + | 1338 | WP_048231659.1 | S49 family peptidase | - |
| GHC23_RS09920 () | 2072182..2072514 | + | 333 | WP_003826193.1 | head decoration protein | - |
| GHC23_RS09925 () | 2072582..2073607 | + | 1026 | WP_103284335.1 | major capsid protein | - |
| GHC23_RS09930 () | 2073653..2074057 | + | 405 | WP_153752831.1 | DNA-packaging protein | - |
| GHC23_RS09935 () | 2074069..2074422 | + | 354 | WP_153752832.1 | phage tail protein | - |
| GHC23_RS09940 () | 2074432..2074986 | + | 555 | WP_048231665.1 | phage tail protein | - |
| GHC23_RS09945 () | 2074983..2075381 | + | 399 | WP_003826202.1 | phage minor tail U family protein | - |
| GHC23_RS09950 () | 2075389..2076126 | + | 738 | WP_048231668.1 | Ig-like domain-containing protein | - |
| GHC23_RS09955 () | 2076163..2076570 | + | 408 | WP_008784480.1 | phage minor tail protein G | - |
| GHC23_RS09960 () | 2076579..2076899 | + | 321 | WP_071524448.1 | phage tail assembly protein T | - |
| GHC23_RS09965 () | 2076877..2079393 | + | 2517 | WP_048231671.1 | phage tail tape measure protein | - |
| GHC23_RS09970 () | 2079397..2079744 | + | 348 | WP_008322439.1 | phage tail protein | - |
| GHC23_RS09975 () | 2079741..2080499 | + | 759 | WP_153752833.1 | phage minor tail protein L | - |
| GHC23_RS09980 () | 2080501..2081211 | + | 711 | WP_088902111.1 | C40 family peptidase | - |
| GHC23_RS09985 () | 2081242..2081577 | + | 336 | WP_008784485.1 | hypothetical protein | - |
| GHC23_RS09990 () | 2081629..2082231 | + | 603 | WP_032941793.1 | tail assembly protein | - |
| GHC23_RS09995 () | 2082269..2082586 | + | 318 | WP_008323352.1 | hypothetical protein | - |
| GHC23_RS10000 () | 2082555..2082815 | - | 261 | WP_008323354.1 | hypothetical protein | - |
| GHC23_RS10005 () | 2082982..2086167 | + | 3186 | WP_153752834.1 | host specificity protein J | - |
| GHC23_RS10010 () | 2086167..2086481 | + | 315 | WP_044700331.1 | hypothetical protein | - |
| GHC23_RS10015 () | 2086482..2087156 | + | 675 | WP_153752835.1 | hypothetical protein | - |
| GHC23_RS10020 () | 2087265..2087504 | + | 240 | WP_153752836.1 | cor protein | - |
| GHC23_RS10025 () | 2088187..2088873 | + | 687 | WP_153753973.1 | hypothetical protein | - |
| GHC23_RS10030 () | 2089509..2090150 | + | 642 | WP_048235214.1 | protein-serine/threonine phosphatase | - |
| GHC23_RS10035 () | 2090151..2090342 | - | 192 | WP_003034941.1 | YebW family protein | - |
| GHC23_RS10040 () | 2090445..2090681 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| GHC23_RS10045 () | 2090782..2092203 | - | 1422 | WP_153752838.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| GHC23_RS10050 () | 2092283..2094916 | - | 2634 | WP_063940870.1 | hypothetical protein | VF |
| GHC23_RS10055 () | 2094885..2096168 | - | 1284 | WP_048216185.1 | membrane integrity lipid transport subunit YebS | - |
| GHC23_RS10060 () | 2096297..2096794 | + | 498 | WP_003833782.1 | GAF domain-containing protein | - |
| GHC23_RS10065 () | 2096891..2097577 | + | 687 | WP_003833781.1 | RNA chaperone ProQ | - |
| GHC23_RS10070 () | 2097597..2099645 | + | 2049 | WP_048235216.1 | carboxy terminal-processing peptidase | - |
| GHC23_RS10075 () | 2099838..2100719 | + | 882 | WP_003034964.1 | protease HtpX | - |
| GHC23_RS10080 () | 2100767..2102140 | - | 1374 | WP_048216186.1 | MFS transporter | - |
| GHC23_RS10085 () | 2102315..2103106 | + | 792 | WP_153752840.1 | DNA-binding transcriptional regulator KdgR | - |
| GHC23_RS10090 () | 2103221..2103460 | - | 240 | WP_003034975.1 | membrane protein | - |
| GHC23_RS10095 () | 2103625..2103768 | + | 144 | WP_003034977.1 | PhoP/PhoQ regulator MgrB | - |
| GHC23_RS10100 () | 2103843..2104127 | + | 285 | WP_003833774.1 | YebO family protein | - |
| GHC23_RS10105 () | 2104764..2104907 | + | 144 | WP_003034983.1 | YobF family protein | - |
| GHC23_RS10110 () | 2104920..2105129 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| GHC23_RS10115 () | 2105349..2107094 | + | 1746 | WP_003833773.1 | peptidoglycan glycosyltransferase FtsI | - |
| GHC23_RS10120 () | 2107158..2107967 | + | 810 | WP_153752842.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| GHC23_RS10125 () | 2107964..2108530 | - | 567 | WP_020996621.1 | manganese efflux pump MntP | - |
| GHC23_RS10130 () | 2108964..2109422 | - | 459 | WP_048216190.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|