Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2046340..2046483 | Replicon | chromosome |
| Accession | NZ_CP045840 | ||
| Organism | Citrobacter sp. S40-1-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2046375..2046478 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2046340..2046483 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GHC23_RS09700 | 2041493..2042395 | - | 903 | WP_003844140.1 | diguanylate cyclase | - |
| GHC23_RS09705 | 2042713..2042904 | - | 192 | WP_008322661.1 | hypothetical protein | - |
| GHC23_RS09710 | 2043397..2043987 | - | 591 | WP_032939142.1 | hypothetical protein | - |
| GHC23_RS09720 | 2044610..2044984 | + | 375 | WP_153752805.1 | CopC domain-containing protein YobA | - |
| GHC23_RS09725 | 2044988..2045860 | + | 873 | WP_008785042.1 | copper homeostasis membrane protein CopD | - |
| GHC23_RS09730 | 2045881..2046219 | + | 339 | WP_003833793.1 | YebY family protein | - |
| - | 2046340..2046483 | - | 144 | - | - | Antitoxin |
| - | 2046375..2046478 | + | 104 | - | - | Toxin |
| GHC23_RS09735 | 2046556..2047641 | - | 1086 | WP_153752806.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| GHC23_RS09740 | 2047610..2047882 | - | 273 | WP_016156226.1 | hypothetical protein | - |
| GHC23_RS09745 | 2047947..2048189 | - | 243 | WP_003841647.1 | DUF4060 family protein | - |
| GHC23_RS09750 | 2048176..2048379 | - | 204 | WP_153752808.1 | hypothetical protein | - |
| GHC23_RS09755 | 2048372..2048716 | - | 345 | WP_153752810.1 | hypothetical protein | - |
| GHC23_RS09760 | 2048751..2049791 | - | 1041 | WP_153752812.1 | recombinase RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2017388..2105129 | 87741 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T142799 NZ_CP045840:2046375-2046478 [Citrobacter sp. S40-1-2]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT142799 NZ_CP045840:c2046483-2046340 [Citrobacter sp. S40-1-2]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
