MGE detailed information
MGE type: Conjugative plasmid MGE length: 43372 bp
Accession: NZ_CP045801 Location: 1..43372 Organism: Pseudomonas syringae USA011 Replicon: plasmid pUSA011-2
Accession: NZ_CP045801 Location: 1..43372 Organism: Pseudomonas syringae USA011 Replicon: plasmid pUSA011-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N028_RS26970 () | 1463..1864 | - | 402 | Protein_1 | VirB3 family type IV secretion system protein | - |
| N028_RS26975 () | 1877..2215 | - | 339 | WP_153795706.1 | conjugal transfer protein | - |
| N028_RS26980 () | 2212..2919 | - | 708 | WP_003436811.1 | Type IV secretion system protein virB1 | VF |
| N028_RS26985 () | 2932..3174 | - | 243 | WP_003436809.1 | hypothetical protein | - |
| N028_RS26990 () | 3263..3775 | - | 513 | WP_003436807.1 | hypothetical protein | - |
| N028_RS26995 () | 3992..4387 | + | 396 | WP_024639869.1 | helix-turn-helix domain-containing protein | - |
| N028_RS27000 () | 4399..4596 | - | 198 | WP_003436803.1 | hypothetical protein | - |
| N028_RS27005 () | 4695..5795 | - | 1101 | WP_024639870.1 | polyamine ABC transporter substrate-binding protein | - |
| N028_RS27010 () | 5904..6677 | + | 774 | WP_005782492.1 | Oxygen regulatory protein NreC | VF |
| N028_RS27015 () | 6807..7157 | - | 351 | WP_024639831.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| N028_RS27020 () | 7170..7418 | - | 249 | WP_024639832.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| N028_RS27025 () | 7669..8031 | + | 363 | WP_152981388.1 | hypothetical protein | - |
| N028_RS27030 () | 8072..9034 | + | 963 | WP_032611494.1 | IS91 family transposase ISWz1 | Transposase |
| N028_RS27035 () | 9060..9380 | - | 321 | WP_024639835.1 | hypothetical protein | - |
| N028_RS27040 () | 9790..10179 | + | 390 | WP_024639836.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| N028_RS27045 () | 10227..10538 | - | 312 | WP_024639837.1 | helix-turn-helix domain-containing protein | - |
| N028_RS27050 () | 11128..11769 | - | 642 | WP_024639838.1 | SOS response-associated peptidase | - |
| N028_RS27055 () | 12007..12294 | - | 288 | WP_024639839.1 | hypothetical protein | - |
| N028_RS27060 () | 12284..12934 | - | 651 | WP_024639840.1 | AAA family ATPase | - |
| N028_RS27065 () | 13047..13247 | - | 201 | WP_003348581.1 | hypothetical protein | - |
| N028_RS27070 () | 13585..13995 | - | 411 | WP_024639841.1 | hypothetical protein | - |
| N028_RS27075 () | 14089..14376 | - | 288 | WP_080393597.1 | hypothetical protein | - |
| N028_RS27080 () | 14538..15836 | - | 1299 | WP_050586763.1 | Y-family DNA polymerase | - |
| N028_RS27085 () | 15814..16239 | - | 426 | WP_024639843.1 | S24 family peptidase | - |
| N028_RS27090 () | 16815..18218 | - | 1404 | WP_152981389.1 | DUF3800 domain-containing protein | - |
| N028_RS27095 () | 19149..20147 | - | 999 | WP_024639845.1 | DUF4238 domain-containing protein | - |
| N028_RS27100 () | 20870..21580 | - | 711 | WP_024639846.1 | hypothetical protein | - |
| N028_RS27105 () | 21985..22188 | - | 204 | WP_024639847.1 | ribbon-helix-helix protein, CopG family | - |
| N028_RS27110 () | 22326..26075 | - | 3750 | WP_152981391.1 | hypothetical protein | Relaxase |
| N028_RS27115 () | 26065..26790 | - | 726 | WP_024639852.1 | hypothetical protein | - |
| N028_RS27120 () | 27016..27555 | + | 540 | WP_024639853.1 | hypothetical protein | - |
| N028_RS27125 () | 27582..28154 | - | 573 | WP_024639854.1 | hypothetical protein | - |
| N028_RS27130 () | 28151..28885 | - | 735 | WP_024639855.1 | plasmid stability protein StbB | - |
| N028_RS27135 () | 29185..29469 | - | 285 | WP_024639856.1 | hypothetical protein | - |
| N028_RS27140 () | 29510..30115 | - | 606 | WP_024639857.1 | single-stranded DNA-binding protein | - |
| N028_RS27145 () | 30180..30947 | - | 768 | WP_024639858.1 | hypothetical protein | - |
| N028_RS27150 () | 30975..33140 | - | 2166 | WP_024639859.1 | type IA DNA topoisomerase | - |
| N028_RS27155 () | 33168..33530 | - | 363 | WP_024639860.1 | Killer protein | - |
| N028_RS27160 () | 33571..35217 | - | 1647 | WP_024639861.1 | type IV secretory system conjugative DNA transfer family protein | - |
| N028_RS27165 () | 35217..35447 | - | 231 | WP_024639862.1 | hypothetical protein | - |
| N028_RS27170 () | 35576..35932 | - | 357 | WP_003407091.1 | hypothetical protein | - |
| N028_RS27175 () | 35942..36973 | - | 1032 | WP_024639863.1 | Type IV secretion system protein VirB11 | VF |
| N028_RS27180 () | 36983..38353 | - | 1371 | WP_024639864.1 | Type IV secretion system protein virB10 | VF |
| N028_RS27185 () | 38340..39149 | - | 810 | WP_003436827.1 | P-type conjugative transfer protein VirB9 | - |
| N028_RS27190 () | 39139..39927 | - | 789 | WP_024639865.1 | type IV secretion system protein | - |
| N028_RS27195 () | 39965..40267 | - | 303 | WP_003436825.1 | hypothetical protein | - |
| N028_RS27200 () | 40335..41267 | - | 933 | WP_024639866.1 | type IV secretion system protein | - |
| N028_RS27205 () | 41278..41631 | - | 354 | WP_024639867.1 | hypothetical protein | - |
| N028_RS27210 () | 41664..42350 | - | 687 | WP_003436817.1 | P-type DNA transfer protein VirB5 | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|