MGE detailed information
MGE type: Genomic_island MGE length: 74610 bp
Accession: NZ_CP045784 Location: 258420..333029 Organism: Shigella dysenteriae strain CFSAN029786 Replicon: chromosome
Accession: NZ_CP045784 Location: 258420..333029 Organism: Shigella dysenteriae strain CFSAN029786 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GH770_RS01280 (254396) | 254396..256117 | + | 1722 | WP_001202167.1 | cysteine/glutathione ABC transporter ATP-binding protein/permease CydC | - |
| GH770_RS01285 (256159) | 256159..256863 | + | 705 | WP_001241678.1 | leucyl/phenylalanyl-tRNA--protein transferase | - |
| GH770_RS01290 (257148) | 257148..257366 | + | 219 | WP_001040187.1 | translation initiation factor IF-1 | - |
| GH770_RS01300 (257857) | 257857..258138 | - | 282 | Protein_254 | DUF4942 domain-containing protein | - |
| GH770_RS01305 (258420) | 258420..259424 | - | 1005 | WP_001179707.1 | IS110 family transposase ISSfl8 | Transposase |
| GH770_RS01310 (259496) | 259496..260056 | - | 561 | Protein_256 | DUF4942 domain-containing protein | - |
| GH770_RS01315 (260141) | 260141..260338 | - | 198 | WP_000839282.1 | DUF957 domain-containing protein | - |
| GH770_RS01320 (260350) | 260350..260841 | - | 492 | WP_000976828.1 | DUF5983 family protein | - |
| GH770_RS01325 (260838) | 260838..261212 | - | 375 | WP_000854917.1 | TA system toxin CbtA family protein | Toxin Detail |
| GH770_RS01330 (261259) | 261259..261633 | - | 375 | WP_001280958.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin Detail |
| GH770_RS01335 (261796) | 261796..262017 | - | 222 | WP_001220314.1 | DUF987 domain-containing protein | - |
| GH770_RS01340 (262080) | 262080..262556 | - | 477 | WP_005011624.1 | RadC family protein | - |
| GH770_RS01345 (262572) | 262572..263045 | - | 474 | WP_005011597.1 | antirestriction protein | - |
| GH770_RS01350 (263387) | 263387..264208 | - | 822 | WP_001234584.1 | DUF932 domain-containing protein | - |
| GH770_RS01355 (264308) | 264308..264481 | - | 174 | WP_000088744.1 | DUF905 family protein | - |
| GH770_RS26035 (264601) | 264601..264864 | - | 264 | WP_000466628.1 | DNA polymerase III subunit gamma/tau | - |
| GH770_RS01370 (265959) | 265959..267029 | - | 1071 | WP_000021107.1 | hypothetical protein | VF |
| GH770_RS01375 (267026) | 267026..267931 | - | 906 | WP_000203522.1 | diguanylate cyclase regulator RdcB family protein | - |
| GH770_RS01380 (267928) | 267928..270312 | - | 2385 | WP_000544701.1 | dynamin family protein | - |
| GH770_RS01385 (270530) | 270530..271402 | - | 873 | WP_001069775.1 | GTPase family protein | - |
| GH770_RS01390 (271733) | 271733..271915 | + | 183 | WP_000282124.1 | hypothetical protein | - |
| GH770_RS01400 (273480) | 273480..273554 | - | 75 | Protein_274 | IS66 family insertion sequence element accessory protein TnpB | - |
| GH770_RS01405 (273551) | 273551..273976 | - | 426 | WP_000422755.1 | IS66 family transposase ISEc23 | Transposase |
| GH770_RS01410 (275094) | 275094..275606 | - | 513 | WP_000290499.1 | hypothetical protein | VF |
| GH770_RS01415 (275641) | 275641..275925 | - | 285 | Protein_277 | hypothetical protein | VF |
| GH770_RS01425 (277236) | 277236..277645 | - | 410 | Protein_279 | transposase | - |
| GH770_RS01430 (277730) | 277730..278211 | - | 482 | Protein_280 | type I restriction endonuclease | - |
| GH770_RS01435 (278377) | 278377..279489 | + | 1113 | WP_000705119.1 | mandelate racemase/muconate lactonizing enzyme family protein | - |
| GH770_RS01440 (279561) | 279561..280928 | + | 1368 | WP_001139133.1 | MFS transporter | - |
| GH770_RS01445 (280978) | 280978..281481 | + | 504 | WP_284526286.1 | cyclic nucleotide-binding domain-containing protein | - |
| GH770_RS01450 (281627) | 281627..281983 | + | 357 | WP_000239757.1 | IS66 family transposase IS682 | Transposase |
| GH770_RS01455 (281980) | 281980..282330 | + | 351 | WP_000624671.1 | IS66 family transposase IS682 | Transposase |
| GH770_RS01460 (282361) | 282361..283953 | + | 1593 | WP_001072392.1 | IS66 family transposase ISEc43 | Transposase |
| GH770_RS01465 (283996) | 283996..284235 | + | 240 | WP_284526287.1 | helix-turn-helix domain-containing protein | - |
| GH770_RS01470 (284487) | 284487..284777 | - | 291 | WP_000624715.1 | IS66 family transposase ISEc23 | Transposase |
| GH770_RS01475 (284774) | 284774..285199 | - | 426 | WP_000422761.1 | IS66 family transposase ISEc23 | Transposase |
| GH770_RS01480 (285286) | 285286..285501 | + | 216 | Protein_290 | IS3 family transposase IS629 | Transposase |
| GH770_RS01485 (285544) | 285544..285883 | - | 340 | Protein_291 | IS481 family transposase ISEc18 | Transposase |
| GH770_RS01490 (286199) | 286199..286843 | - | 645 | WP_046891699.1 | hypothetical protein | - |
| GH770_RS01495 (286864) | 286864..287133 | - | 270 | WP_000226519.1 | PerC family transcriptional regulator | - |
| GH770_RS01500 (287212) | 287212..287850 | - | 639 | WP_000502842.1 | ParB N-terminal domain-containing protein | - |
| GH770_RS01505 (287835) | 287835..289067 | - | 1233 | WP_001285504.1 | phosphoadenosine phosphosulfate reductase | - |
| GH770_RS01510 (289568) | 289568..292249 | - | 2682 | WP_000256234.1 | AAA domain-containing protein | - |
| GH770_RS01515 (292490) | 292490..293536 | - | 1047 | WP_001335711.1 | ShlB/FhaC/HecB family hemolysin secretion/activation protein | - |
| GH770_RS25730 (293640) | 293640..293789 | - | 150 | WP_000590537.1 | hypothetical protein | - |
| GH770_RS01520 (294211) | 294211..294402 | + | 192 | WP_001287882.1 | DUF4222 domain-containing protein | - |
| GH770_RS01525 (294455) | 294455..294688 | - | 234 | WP_000124179.1 | hypothetical protein | - |
| GH770_RS01530 (294784) | 294784..295407 | - | 624 | WP_001260386.1 | hypothetical protein | - |
| GH770_RS01535 (295496) | 295496..296005 | - | 510 | WP_001167434.1 | hypothetical protein | - |
| GH770_RS01540 (296463) | 296463..296921 | + | 459 | WP_001301456.1 | hypothetical protein | - |
| GH770_RS01545 (297159) | 297159..297856 | + | 698 | WP_226929086.1 | IS1 family transposase IS1X2 | Transposase |
| GH770_RS01550 (297871) | 297871..299034 | + | 1164 | Protein_305 | IS4 family transposase IS10R | Transposase |
| GH770_RS01555 (299044) | 299044..299460 | - | 417 | WP_000275180.1 | Transposon Tn10 TetD protein | VF |
| GH770_RS01560 (299548) | 299548..300141 | + | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| GH770_RS01565 (300254) | 300254..301459 | - | 1206 | WP_001089068.1 | Tetracycline resistance protein, class B | ARG |
| GH770_RS01570 (301541) | 301541..302164 | + | 624 | WP_000088605.1 | Tetracycline repressor protein class B from transposon Tn10 | VF |
| GH770_RS01575 (302142) | 302142..302828 | - | 687 | WP_001284954.1 | winged helix-turn-helix domain-containing protein | - |
| GH770_RS01580 (302836) | 302836..303222 | - | 387 | WP_000460651.1 | hypothetical protein | - |
| GH770_RS01585 (303215) | 303215..303478 | - | 264 | WP_049802299.1 | antibiotic biosynthesis monooxygenase | - |
| GH770_RS01595 (304451) | 304451..305110 | + | 660 | WP_000412211.1 | Chloramphenicol acetyltransferase | ARG |
| GH770_RS01600 (305311) | 305311..305688 | - | 378 | WP_000656305.1 | GNAT family N-acetyltransferase | - |
| GH770_RS01605 (305755) | 305755..308721 | - | 2967 | WP_001138064.1 | Tn3 family transposase TnpA_TnAs3 | Transposase |
| GH770_RS01610 (308724) | 308724..309284 | - | 561 | WP_000147567.1 | Tn3 family transposase TnpR_TnAs3 | Transposase |
| GH770_RS26710 (309410) | 309410..309610 | - | 201 | WP_000993264.1 | DUF3330 domain-containing protein | - |
| GH770_RS26715 (309710) | 309710..309760 | - | 51 | Protein_319 | transposase | - |
| GH770_RS01620 (309963) | 309963..310976 | - | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| GH770_RS01625 (311186) | 311186..312016 | + | 831 | WP_001334766.1 | Beta-lactamase OXA-1 | ARG |
| GH770_RS01630 (312129) | 312129..312967 | + | 839 | Protein_322 | Streptomycin 3''-adenylyltransferase | ARG |
| GH770_RS01635 (313056) | 313056..313753 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| GH770_RS01640 (313770) | 313770..314258 | + | 489 | Protein_324 | putative hexosyltransferase CapU | - |
| GH770_RS01645 (314263) | 314263..315213 | + | 951 | WP_001300030.1 | virulence factor VirK | - |
| GH770_RS01650 (315278) | 315278..316222 | + | 945 | WP_001411475.1 | Lipid A biosynthesis myristoyltransferase 2 | VF |
| GH770_RS01655 (316403) | 316403..317542 | + | 1140 | WP_000088352.1 | IS3 family transposase ISSd1 | Transposase |
| GH770_RS01660 (317696) | 317696..319693 | + | 1998 | WP_001293435.1 | choline BCCT transporter BetT | - |
| GH770_RS01665 (319756) | 319756..321033 | + | 1278 | WP_000625669.1 | DUF2254 domain-containing protein | - |
| GH770_RS01675 (322542) | 322542..322760 | + | 219 | WP_000145481.1 | TetR/AcrR family transcriptional regulator | - |
| GH770_RS01680 (322811) | 322811..323176 | - | 366 | Protein_332 | IS21 family transposase IS100kyp | Transposase |
| GH770_RS01685 (323279) | 323279..324492 | + | 1214 | WP_165770242.1 | IS3 family transposase IS629 | Transposase |
| GH770_RS01690 (324532) | 324532..324873 | - | 342 | WP_000287886.1 | inovirus-type Gp2 protein | - |
| GH770_RS01695 (324901) | 324901..325463 | - | 563 | Protein_335 | inovirus Gp2 family protein | - |
| GH770_RS26040 (325527) | 325527..325873 | - | 347 | Protein_336 | DEAD/DEAH box helicase | - |
| GH770_RS01705 (325980) | 325980..326543 | - | 564 | WP_000282110.1 | inovirus-type Gp2 protein | - |
| GH770_RS01710 (327918) | 327918..329780 | - | 1863 | WP_284526288.1 | hypothetical protein | - |
| GH770_RS01715 (329854) | 329854..330141 | + | 288 | WP_000070931.1 | AlpA family transcriptional regulator | - |
| GH770_RS01720 (330113) | 330113..331642 | + | 1530 | WP_005067490.1 | DUF3987 domain-containing protein | - |
| GH770_RS01725 (331812) | 331812..333029 | - | 1218 | WP_000279879.1 | Prophage integrase IntA ; Integrase | Integrase |
| GH770_RS01730 (333547) | 333547..335823 | - | 2277 | WP_000934041.1 | ATP-dependent Clp protease ATP-binding subunit ClpA | - |
| GH770_RS01735 (335854) | 335854..336174 | - | 321 | WP_000520781.1 | ATP-dependent Clp protease adapter ClpS | - |
| GH770_RS26045 (336273) | 336273..336347 | - | 75 | WP_001406719.1 | protein YljB | - |
| GH770_RS01740 (336497) | 336497..336721 | + | 225 | WP_000410785.1 | cold shock-like protein CspD | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|