MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 125470 bp
Accession: NZ_CP045620 Location: 1..125470 Organism: Roseibium aggregatum strain RF14 Replicon: plasmid unnamed3
Accession: NZ_CP045620 Location: 1..125470 Organism: Roseibium aggregatum strain RF14 Replicon: plasmid unnamed3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GFC08_RS29380 (GFC08_29185) | 823..1962 | - | 1140 | WP_228933603.1 | hypothetical protein | - |
| GFC08_RS29385 (GFC08_29190) | 2164..2415 | + | 252 | WP_228933604.1 | hypothetical protein | - |
| GFC08_RS29390 (GFC08_29195) | 2468..2581 | + | 114 | Protein_4 | integrase core domain-containing protein | - |
| GFC08_RS29395 (GFC08_29200) | 2597..4387 | - | 1791 | WP_228933590.1 | EAL domain-containing protein | - |
| GFC08_RS29400 (GFC08_29205) | 4405..5760 | - | 1356 | WP_228933591.1 | Heme-based aerotactic transducer HemAT | VF |
| GFC08_RS29405 (GFC08_29210) | 6135..6486 | + | 352 | Protein_7 | IS481 family transposase | - |
| GFC08_RS29410 (GFC08_29215) | 6695..7411 | - | 717 | WP_228933605.1 | hypothetical protein | - |
| GFC08_RS29415 (GFC08_29220) | 7424..8077 | - | 654 | WP_228933593.1 | fructose-6-phosphate aldolase | - |
| GFC08_RS29420 (GFC08_29225) | 8123..9739 | - | 1617 | WP_228933594.1 | FGGY-family carbohydrate kinase | - |
| GFC08_RS29425 (GFC08_29230) | 9744..10472 | - | 729 | WP_228933595.1 | SDR family oxidoreductase | - |
| GFC08_RS29430 (GFC08_29235) | 10499..11764 | - | 1266 | WP_228933596.1 | sugar ABC transporter permease | - |
| GFC08_RS29435 (GFC08_29240) | 11773..12588 | - | 816 | WP_228933597.1 | Fructose import ATP-binding protein FrcA | VF |
| GFC08_RS29440 (GFC08_29245) | 12681..13735 | - | 1055 | Protein_14 | sugar ABC transporter substrate-binding protein | - |
| GFC08_RS29445 (GFC08_29250) | 14182..15276 | - | 1095 | WP_228933598.1 | LacI family DNA-binding transcriptional regulator | - |
| GFC08_RS29450 (GFC08_29255) | 15494..15919 | - | 426 | WP_228933599.1 | hypothetical protein | - |
| GFC08_RS29455 (GFC08_29260) | 15912..16154 | - | 243 | WP_228933600.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | - |
| GFC08_RS29460 (GFC08_29265) | 16453..17340 | + | 888 | WP_228933601.1 | Tyrosine recombinase XerC | VF |
| GFC08_RS29465 (GFC08_29270) | 17353..18540 | + | 1188 | WP_228933606.1 | IS91 family transposase ISMno24 | Transposase |
| GFC08_RS29470 (GFC08_29275) | 18942..19874 | - | 933 | WP_228933607.1 | DUF955 domain-containing protein | - |
| GFC08_RS29475 (GFC08_29280) | 19893..20381 | - | 489 | WP_228933608.1 | helix-turn-helix transcriptional regulator | - |
| GFC08_RS29480 (GFC08_29285) | 20378..21025 | - | 648 | WP_228933609.1 | GNAT family N-acetyltransferase | - |
| GFC08_RS29485 (GFC08_29290) | 21022..21231 | - | 210 | WP_220227296.1 | ribbon-helix-helix protein, CopG family | - |
| GFC08_RS29490 (GFC08_29295) | 21383..22525 | + | 1143 | WP_228933610.1 | multiubiquitin domain-containing protein | - |
| GFC08_RS29495 (GFC08_29300) | 22522..23913 | + | 1392 | WP_228933611.1 | ThiF family adenylyltransferase | - |
| GFC08_RS29500 | 24060..24239 | + | 180 | WP_228933640.1 | DUF6527 family protein | - |
| GFC08_RS29505 (GFC08_29310) | 24421..25047 | - | 627 | WP_228933612.1 | TraH family protein | - |
| GFC08_RS29510 (GFC08_29315) | 25052..26143 | - | 1092 | WP_228933613.1 | conjugal transfer protein TraB | - |
| GFC08_RS29515 (GFC08_29320) | 26312..26638 | - | 327 | WP_228933614.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| GFC08_RS29520 (GFC08_29325) | 26635..26925 | - | 291 | WP_228933615.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| GFC08_RS29525 (GFC08_29330) | 26990..27547 | - | 558 | WP_228933641.1 | conjugative transfer signal peptidase TraF | - |
| GFC08_RS29530 (GFC08_29335) | 27547..31182 | - | 3636 | WP_228933616.1 | Mobilization protein A | Relaxase |
| GFC08_RS29535 (GFC08_29340) | 31705..32007 | + | 303 | WP_228933617.1 | TraC family protein | - |
| GFC08_RS29540 (GFC08_29345) | 32036..32242 | + | 207 | Protein_34 | conjugal transfer protein TraD | - |
| GFC08_RS29545 (GFC08_29350) | 32232..34151 | + | 1920 | WP_228933618.1 | Protein VirD4 | VF |
| GFC08_RS29550 (GFC08_29355) | 34312..35787 | - | 1476 | WP_228933619.1 | Biofilm dispersion protein BdlA | VF |
| GFC08_RS29555 (GFC08_29360) | 36157..36318 | + | 162 | Protein_37 | IS6 family transposase | - |
| GFC08_RS29560 (GFC08_29365) | 36869..37267 | + | 399 | WP_228933620.1 | hypothetical protein | - |
| GFC08_RS29565 (GFC08_29370) | 37264..39135 | + | 1872 | WP_228933621.1 | putative signaling protein | VF |
| GFC08_RS29570 (GFC08_29375) | 39148..39510 | - | 363 | WP_228933622.1 | hypothetical protein | - |
| GFC08_RS29575 (GFC08_29380) | 39497..39994 | - | 498 | Protein_41 | ISL3 family transposase ISMex26 | Transposase |
| GFC08_RS29580 (GFC08_29385) | 40153..40491 | + | 339 | WP_228931058.1 | IS66 family transposase ISUnCu14 | Transposase |
| GFC08_RS29585 (GFC08_29390) | 40488..40841 | + | 354 | WP_023001579.1 | IS66 family transposase ISRel8 | Transposase |
| GFC08_RS29590 (GFC08_29395) | 40896..42446 | + | 1551 | WP_228866875.1 | IS66 family transposase ISRel8 | Transposase |
| GFC08_RS29595 (GFC08_29400) | 42485..43537 | - | 1053 | Protein_45 | ISL3 family transposase ISMex24 | Transposase |
| GFC08_RS29600 (GFC08_29405) | 43823..44434 | - | 612 | WP_228933623.1 | Tn3 family transposase TnpR_Tn5403 | Transposase |
| GFC08_RS29605 (GFC08_29410) | 44530..47427 | + | 2898 | WP_228933624.1 | Tn3 family transposase TnpA_Tn5403 | Transposase |
| GFC08_RS29610 (GFC08_29415) | 47386..47643 | - | 258 | WP_228933625.1 | DUF736 family protein | - |
| GFC08_RS29615 | 47955..48686 | - | 732 | WP_228933642.1 | BID domain-containing protein | - |
| GFC08_RS29620 | 48783..49613 | - | 831 | Protein_50 | Fic family protein | - |
| GFC08_RS29625 (GFC08_29425) | 49739..49945 | - | 207 | WP_228933626.1 | antitoxin VbhA family protein | - |
| GFC08_RS29630 (GFC08_29430) | 50169..50576 | - | 408 | WP_228933627.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| GFC08_RS29635 (GFC08_29435) | 50573..50815 | - | 243 | WP_228933628.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| GFC08_RS29640 (GFC08_29440) | 51483..52454 | - | 972 | WP_228933629.1 | hypothetical protein | - |
| GFC08_RS29645 (GFC08_29445) | 52598..52807 | - | 210 | Protein_55 | transposase | - |
| GFC08_RS29650 (GFC08_29450) | 53021..53512 | - | 492 | WP_228933630.1 | ParB/Srx family N-terminal domain-containing protein | - |
| GFC08_RS29655 (GFC08_29455) | 53595..54458 | - | 864 | WP_228933631.1 | DUF932 domain-containing protein | - |
| GFC08_RS29660 (GFC08_29460) | 55093..55296 | - | 204 | WP_228933632.1 | trans-acting factor B | - |
| GFC08_RS29665 (GFC08_29465) | 55998..57476 | - | 1479 | WP_228933633.1 | group II intron reverse transcriptase/maturase | - |
| GFC08_RS29670 (GFC08_29475) | 58193..59038 | - | 846 | WP_228933634.1 | methyltransferase | - |
| GFC08_RS29675 (GFC08_29480) | 59042..59497 | - | 456 | WP_228933635.1 | hypothetical protein | - |
| GFC08_RS29680 (GFC08_29485) | 60337..61113 | + | 777 | WP_228933636.1 | DUF5131 family protein | - |
| GFC08_RS29685 (GFC08_29490) | 61151..62407 | + | 1257 | WP_228933637.1 | three-Cys-motif partner protein TcmP | - |
| GFC08_RS29690 (GFC08_29495) | 62480..63523 | - | 1044 | WP_228933638.1 | GIY-YIG nuclease family protein | - |
| GFC08_RS29695 (GFC08_29500) | 63516..65672 | - | 2157 | WP_228933559.1 | DEAD/DEAH box helicase | - |
| GFC08_RS29700 (GFC08_29505) | 65669..68377 | - | 2709 | WP_228933560.1 | N-6 DNA methylase | - |
| GFC08_RS29705 (GFC08_29510) | 68381..68653 | - | 273 | WP_228933561.1 | helix-turn-helix transcriptional regulator | - |
| GFC08_RS30530 (GFC08_29515) | 69037..69129 | - | 93 | Protein_68 | helix-turn-helix domain-containing protein | - |
| GFC08_RS29710 (GFC08_29520) | 69247..70839 | + | 1593 | WP_228933167.1 | Mu transposase C-terminal domain-containing protein | - |
| GFC08_RS29715 (GFC08_29525) | 70846..71724 | + | 879 | WP_228933161.1 | TniB family NTP-binding protein | - |
| GFC08_RS29720 (GFC08_29530) | 71721..72779 | + | 1059 | WP_228933160.1 | TniQ family protein | - |
| GFC08_RS29725 (GFC08_29535) | 72751..73452 | - | 702 | WP_228933157.1 | SMC-Scp complex subunit ScpB | - |
| GFC08_RS29730 (GFC08_29540) | 73466..74419 | - | 954 | WP_228933155.1 | DUF1403 family protein | - |
| GFC08_RS29735 (GFC08_29545) | 74545..75681 | + | 1137 | WP_228933153.1 | site-specific integrase | - |
| GFC08_RS29740 (GFC08_29550) | 76132..77047 | + | 916 | Protein_75 | Tn3 family transposase TnpR_ISMex38 | Transposase |
| GFC08_RS29745 (GFC08_29555) | 77175..78431 | - | 1257 | WP_228933562.1 | plasmid replication protein RepC | - |
| GFC08_RS29750 (GFC08_29560) | 78655..79656 | - | 1002 | WP_228933563.1 | plasmid partitioning protein RepB | - |
| GFC08_RS29755 (GFC08_29565) | 79660..80853 | - | 1194 | WP_228933564.1 | Sporulation initiation inhibitor protein Soj | VF |
| GFC08_RS29760 (GFC08_29570) | 81338..83146 | + | 1809 | WP_228933565.1 | phosphomethylpyrimidine synthase ThiC | - |
| GFC08_RS29765 (GFC08_29575) | 83853..84994 | - | 1142 | Protein_80 | IS3 family transposase ISDsp2 | Transposase |
| GFC08_RS29770 (GFC08_29580) | 85369..86922 | + | 1554 | WP_228933566.1 | IS21 family transposase ISRsp2 | Transposase |
| GFC08_RS29775 (GFC08_29585) | 86941..87708 | + | 768 | WP_228933567.1 | IS21 family transposase ISRsp2 | Transposase |
| GFC08_RS29780 (GFC08_29590) | 88202..89365 | - | 1164 | WP_228933568.1 | hypothetical protein | - |
| GFC08_RS29785 (GFC08_29595) | 90111..90398 | - | 288 | WP_228933569.1 | hypothetical protein | - |
| GFC08_RS29790 (GFC08_29600) | 90533..90787 | - | 255 | WP_228933570.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| GFC08_RS29795 (GFC08_29605) | 91017..91793 | - | 777 | WP_228933571.1 | hypothetical protein | - |
| GFC08_RS29800 (GFC08_29610) | 91856..92374 | - | 519 | WP_228933572.1 | hypothetical protein | - |
| GFC08_RS29805 (GFC08_29615) | 92534..93070 | - | 537 | WP_228933573.1 | Rrf2 family transcriptional regulator | - |
| GFC08_RS29810 (GFC08_29620) | 93076..94362 | - | 1287 | WP_228933574.1 | plasmid replication protein RepC | - |
| GFC08_RS29815 (GFC08_29625) | 95143..96081 | + | 939 | WP_228933575.1 | Type IV secretion system protein PtlH | VF |
| GFC08_RS29820 (GFC08_29630) | 96071..96430 | + | 360 | WP_228933576.1 | TrbC/VirB2 family protein | - |
| GFC08_RS29825 (GFC08_29635) | 96423..96719 | + | 297 | WP_228933577.1 | conjugal transfer protein TrbD | - |
| GFC08_RS29830 (GFC08_29640) | 96722..99169 | + | 2448 | WP_228933578.1 | conjugal transfer protein TrbE | - |
| GFC08_RS29835 (GFC08_29645) | 99147..99938 | + | 792 | WP_228933579.1 | P-type conjugative transfer protein TrbJ | - |
| GFC08_RS29840 (GFC08_29650) | 99943..100185 | + | 243 | WP_228933580.1 | hypothetical protein | - |
| GFC08_RS29845 (GFC08_29655) | 100206..101423 | + | 1218 | WP_228933581.1 | P-type conjugative transfer protein TrbL | - |
| GFC08_RS29850 (GFC08_29660) | 101439..102101 | + | 663 | WP_228933582.1 | conjugal transfer protein TrbF | - |
| GFC08_RS29855 (GFC08_29665) | 102167..102964 | + | 798 | WP_228933639.1 | P-type conjugative transfer protein TrbG | - |
| GFC08_RS29860 (GFC08_29670) | 102967..103431 | + | 465 | WP_228933583.1 | conjugal transfer protein TrbH | - |
| GFC08_RS29865 (GFC08_29675) | 103444..104787 | + | 1344 | WP_228933584.1 | Type IV secretion system protein PtlG | VF |
| GFC08_RS29870 (GFC08_29680) | 104836..105417 | + | 582 | WP_228933585.1 | hypothetical protein | - |
| GFC08_RS29875 | 105484..106167 | + | 684 | WP_228933586.1 | DUF4158 domain-containing protein | - |
| GFC08_RS29880 | 106264..106686 | + | 423 | WP_228933587.1 | Tn3 family transposase TnpA_ISNpu13 | Transposase |
| GFC08_RS29885 (GFC08_29695) | 106803..108143 | + | 1341 | WP_228933588.1 | Heme-based aerotactic transducer HemAT | VF |
| GFC08_RS29890 (GFC08_29700) | 108362..110179 | - | 1818 | WP_228933589.1 | hypothetical protein | - |
| GFC08_RS29895 (GFC08_29710) | 110260..112050 | - | 1791 | WP_228933590.1 | EAL domain-containing protein | - |
| GFC08_RS29900 (GFC08_29715) | 112068..113423 | - | 1356 | WP_228933591.1 | Heme-based aerotactic transducer HemAT | VF |
| GFC08_RS29905 (GFC08_29720) | 113798..114149 | + | 352 | Protein_108 | IS481 family transposase | - |
| GFC08_RS29910 (GFC08_29725) | 114215..115075 | - | 861 | WP_228933592.1 | hypothetical protein | - |
| GFC08_RS29915 (GFC08_29730) | 115088..115741 | - | 654 | WP_228933593.1 | fructose-6-phosphate aldolase | - |
| GFC08_RS29920 (GFC08_29735) | 115787..117403 | - | 1617 | WP_228933594.1 | FGGY-family carbohydrate kinase | - |
| GFC08_RS29925 (GFC08_29740) | 117408..118136 | - | 729 | WP_228933595.1 | SDR family oxidoreductase | - |
| GFC08_RS29930 (GFC08_29745) | 118163..119428 | - | 1266 | WP_228933596.1 | sugar ABC transporter permease | - |
| GFC08_RS29935 (GFC08_29750) | 119437..120252 | - | 816 | WP_228933597.1 | Fructose import ATP-binding protein FrcA | VF |
| GFC08_RS29940 (GFC08_29755) | 120345..121399 | - | 1055 | Protein_115 | sugar ABC transporter substrate-binding protein | - |
| GFC08_RS29945 (GFC08_29760) | 121846..122940 | - | 1095 | WP_228933598.1 | LacI family DNA-binding transcriptional regulator | - |
| GFC08_RS29950 (GFC08_29765) | 123158..123583 | - | 426 | WP_228933599.1 | hypothetical protein | - |
| GFC08_RS29955 (GFC08_29770) | 123576..123818 | - | 243 | WP_228933600.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | - |
| GFC08_RS29960 (GFC08_29775) | 124117..125004 | + | 888 | WP_228933601.1 | Tyrosine recombinase XerC | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|