MGE detailed information
MGE type: Prophage MGE length: 63166 bp
Accession: NZ_CP045522 Location: 986709..1049874 Organism: Shigella flexneri strain 5908.2 Replicon: chromosome
Accession: NZ_CP045522 Location: 986709..1049874 Organism: Shigella flexneri strain 5908.2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GE167_RS04710 (982758) | 982758..983279 | + | 522 | Protein_939 | C40 family peptidase | - |
| GE167_RS04715 (983455) | 983455..983952 | + | 498 | WP_000006251.1 | REP-associated tyrosine transposase RayT | - |
| GE167_RS04720 (984169) | 984169..985881 | - | 1713 | Protein_941 | flagellar biosynthesis protein FlhA | - |
| GE167_RS04725 (985853) | 985853..986638 | + | 786 | WP_000207560.1 | putative lateral flagellar export/assembly protein LafU | - |
| GE167_RS04730 (986709) | 986709..987764 | + | 1056 | WP_001226172.1 | DNA polymerase IV | - |
| GE167_RS04735 (987816) | 987816..988109 | + | 294 | WP_000554759.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| GE167_RS04740 (988112) | 988112..988531 | + | 420 | WP_001263492.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| GE167_RS04745 (988565) | 988565..989262 | + | 698 | WP_094106546.1 | IS1 family transposase IS1X2 | Transposase |
| GE167_RS04750 (989296) | 989296..989748 | + | 453 | WP_001059862.1 | GNAT family N-acetyltransferase | - |
| GE167_RS04755 (989994) | 989994..991038 | + | 1045 | Protein_948 | RNA ligase RtcB family protein | - |
| GE167_RS23790 (991154) | 991154..991714 | + | 561 | Protein_949 | peptide chain release factor H | - |
| GE167_RS04770 (991771) | 991771..993228 | - | 1458 | WP_025759252.1 | cytosol nonspecific dipeptidase | - |
| GE167_RS04775 (993490) | 993490..993948 | + | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| - (994544) | 994544..994624 | + | 81 | NuclAT_7 | - | - |
| - (994544) | 994544..994624 | + | 81 | NuclAT_7 | - | - |
| - (994544) | 994544..994624 | + | 81 | NuclAT_7 | - | - |
| - (994544) | 994544..994624 | + | 81 | NuclAT_7 | - | - |
| GE167_RS04780 (994040) | 994040..995284 | + | 1245 | WP_000189558.1 | esterase FrsA | - |
| GE167_RS04785 (995342) | 995342..995743 | + | 402 | WP_000174677.1 | sigma factor-binding protein Crl | - |
| GE167_RS04790 (995782) | 995782..996837 | - | 1056 | WP_000749862.1 | phosphoporin PhoE | - |
| GE167_RS04795 (997125) | 997125..998228 | + | 1104 | WP_001285280.1 | glutamate 5-kinase | - |
| GE167_RS04800 (998240) | 998240..999493 | + | 1254 | WP_000893267.1 | glutamate-5-semialdehyde dehydrogenase | - |
| GE167_RS04810 (999698) | 999698..1000726 | - | 1029 | Protein_957 | Tyrosine recombinase XerC ; Integrase | Integrase |
| GE167_RS04820 (1001978) | 1001978..1002937 | + | 960 | Protein_959 | hypothetical protein | - |
| GE167_RS04825 (1002955) | 1002955..1003215 | - | 261 | WP_000287051.1 | Arc family DNA-binding protein | - |
| GE167_RS24130 (1003337) | 1003337..1005049 | + | 1713 | WP_225620342.1 | phage head-binding domain-containing protein | - |
| GE167_RS04840 (1005116) | 1005116..1006381 | - | 1266 | WP_000688544.1 | hypothetical protein | - |
| GE167_RS04845 (1006394) | 1006394..1007311 | - | 918 | WP_000703648.1 | Prophage bactoprenol glucosyl transferase | VF |
| GE167_RS04850 (1007308) | 1007308..1007670 | - | 363 | WP_000915539.1 | bactoprenol glucosyl transferase | - |
| GE167_RS04855 (1008028) | 1008028..1009066 | - | 1039 | Protein_965 | IS3 family transposase ISSd1 | Transposase |
| GE167_RS04870 (1010346) | 1010346..1011263 | + | 918 | WP_001524120.1 | Prophage bactoprenol glucosyl transferase | VF |
| GE167_RS04875 (1011583) | 1011583..1012542 | + | 960 | WP_161550549.1 | hypothetical protein | - |
| GE167_RS24135 (1012850) | 1012850..1012935 | + | 86 | Protein_969 | hypothetical protein | - |
| GE167_RS04880 (1013261) | 1013261..1014310 | + | 1050 | WP_000282633.1 | acyltransferase family protein | - |
| GE167_RS04890 (1016141) | 1016141..1016860 | + | 720 | WP_001102119.1 | (Fe-S)-binding protein | - |
| GE167_RS04895 (1016871) | 1016871..1018298 | + | 1428 | WP_000023919.1 | LutB/LldF family L-lactate oxidation iron-sulfur protein | - |
| GE167_RS04900 (1018291) | 1018291..1018986 | + | 696 | WP_000370403.1 | lactate utilization protein C | - |
| GE167_RS04905 (1019233) | 1019233..1019930 | + | 698 | WP_094106546.1 | IS1 family transposase IS1X2 | Transposase |
| GE167_RS04910 (1020096) | 1020096..1020602 | + | 507 | WP_025759213.1 | hypothetical protein | - |
| GE167_RS04915 (1020869) | 1020869..1021105 | + | 237 | Protein_977 | ABC transporter substrate-binding protein | - |
| GE167_RS04920 (1021176) | 1021176..1022343 | + | 1168 | Protein_978 | IS3 family transposase ISLad1 | Transposase |
| GE167_RS04925 (1022351) | 1022351..1023046 | + | 696 | Protein_979 | taurine ABC transporter substrate-binding protein | - |
| GE167_RS04930 (1023059) | 1023059..1023826 | + | 768 | WP_000939366.1 | Taurine import ATP-binding protein TauB | VF |
| GE167_RS04935 (1023823) | 1023823..1024650 | + | 828 | WP_119182157.1 | taurine ABC transporter permease TauC | - |
| GE167_RS23795 (1024647) | 1024647..1025498 | + | 852 | Protein_982 | taurine dioxygenase | - |
| GE167_RS04950 (1025604) | 1025604..1026578 | - | 975 | WP_001295337.1 | porphobilinogen synthase | - |
| GE167_RS04955 (1027104) | 1027104..1027472 | + | 369 | Protein_984 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| GE167_RS04960 (1027564) | 1027564..1028790 | + | 1227 | WP_173020724.1 | IS3 family transposase IS2 | Transposase |
| GE167_RS04965 (1028798) | 1028798..1029331 | + | 534 | Protein_986 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| GE167_RS04970 (1029395) | 1029395..1030542 | + | 1148 | WP_094081536.1 | IS3 family transposase ISEhe3 | Transposase |
| GE167_RS04975 (1030562) | 1030562..1031089 | + | 528 | Protein_988 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| GE167_RS04985 (1031953) | 1031953..1032456 | + | 504 | WP_000953938.1 | helix-turn-helix domain-containing protein | - |
| GE167_RS04990 (1032457) | 1032457..1033614 | - | 1158 | WP_000830735.1 | D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH | - |
| GE167_RS04995 (1033966) | 1033966..1035186 | + | 1221 | WP_001342332.1 | peptide antibiotic transporter SbmA | - |
| GE167_RS05000 (1035199) | 1035199..1036293 | + | 1095 | WP_000092037.1 | surface-exposed outer membrane lipoprotein YaiW | - |
| GE167_RS05005 (1036352) | 1036352..1036660 | - | 309 | WP_000763148.1 | YaiY family protein | - |
| GE167_RS05010 (1036920) | 1036920..1037132 | + | 213 | WP_001599861.1 | DUF2754 domain-containing protein | - |
| GE167_RS05015 (1037156) | 1037156..1038250 | - | 1095 | WP_025759822.1 | D-alanine--D-alanine ligase | - |
| GE167_RS05020 (1038328) | 1038328..1038531 | + | 204 | WP_023517632.1 | hypothetical protein | - |
| GE167_RS05025 (1038713) | 1038713..1038973 | + | 261 | WP_000793082.1 | anti-adapter protein IraP | - |
| GE167_RS05030 (1039074) | 1039074..1040488 | + | 1415 | Protein_999 | alkaline phosphatase | - |
| GE167_RS05035 (1040607) | 1040607..1040927 | + | 321 | WP_001295332.1 | phosphate starvation-inducible protein PsiF | - |
| GE167_RS05045 (1042342) | 1042342..1043457 | + | 1116 | WP_024259952.1 | diguanylate cyclase AdrA | - |
| GE167_RS05050 (1043474) | 1043474..1044283 | - | 810 | WP_005066432.1 | pyrroline-5-carboxylate reductase | - |
| GE167_RS05055 (1044403) | 1044403..1044861 | + | 459 | WP_000158159.1 | YaiI/YqxD family protein | - |
| GE167_RS05060 (1045044) | 1045044..1045568 | + | 525 | WP_000193391.1 | shikimate kinase AroL | - |
| GE167_RS05065 (1045618) | 1045618..1045809 | + | 192 | WP_001142439.1 | protein YaiA | - |
| GE167_RS05070 (1046067) | 1046067..1046744 | + | 678 | WP_001276420.1 | AroM family protein | - |
| GE167_RS05075 (1046816) | 1046816..1047100 | + | 285 | WP_000941942.1 | pyrimidine/purine nucleoside phosphorylase | - |
| GE167_RS05085 (1048014) | 1048014..1048367 | + | 354 | Protein_1010 | DUF2773 domain-containing protein | - |
| GE167_RS05090 (1048364) | 1048364..1048819 | + | 456 | WP_032327098.1 | hypothetical protein | - |
| GE167_RS05095 (1048897) | 1048897..1049808 | - | 912 | WP_005066439.1 | recombination-associated protein RdgC | - |
| GE167_RS05100 (1049933) | 1049933..1050841 | + | 909 | WP_001219327.1 | fructokinase | - |
| GE167_RS05105 (1050984) | 1050984..1052165 | - | 1182 | WP_005066440.1 | MFS transporter AraJ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|