MGE detailed information
MGE type: Prophage MGE length: 64638 bp
Accession: NZ_CP045522 Location: 2622617..2687254 Organism: Shigella flexneri strain 5908.2 Replicon: chromosome
Accession: NZ_CP045522 Location: 2622617..2687254 Organism: Shigella flexneri strain 5908.2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GE167_RS13305 () | 2618340..2619182 | + | 843 | WP_000711882.1 | DUF5677 domain-containing protein | - |
| GE167_RS13310 () | 2619289..2619552 | + | 264 | Protein_2624 | integrase | - |
| GE167_RS24315 () | 2619687..2619875 | + | 189 | Protein_2625 | IS4 family transposase | - |
| GE167_RS24320 () | 2619854..2620027 | + | 174 | Protein_2626 | cobalamin biosynthesis protein | - |
| GE167_RS13315 () | 2620179..2620724 | + | 546 | WP_000973202.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| GE167_RS13320 () | 2620721..2621464 | + | 744 | WP_025759701.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| GE167_RS13325 () | 2621476..2622555 | + | 1080 | WP_001165578.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| GE167_RS13330 () | 2622617..2623552 | + | 936 | WP_128861733.1 | L,D-transpeptidase | - |
| GE167_RS13340 () | 2624010..2624894 | + | 885 | WP_119182152.1 | nitrogen assimilation transcriptional regulator NAC | - |
| GE167_RS13350 () | 2626111..2626985 | - | 875 | Protein_2633 | IS3-like element IS911 family transposase | - |
| GE167_RS13355 () | 2627229..2628179 | + | 951 | WP_001010995.1 | HTH-type transcriptional regulator Cbl | - |
| GE167_RS13365 () | 2628297..2629924 | + | 1628 | Protein_2635 | toxic metabolite efflux MATE transporter YeeO | - |
| GE167_RS13375 () | 2630556..2631272 | - | 717 | WP_000532920.1 | putative transcriptional regulatory protein YeeN | VF |
| GE167_RS13380 () | 2631615..2631800 | - | 186 | Protein_2637 | AMP nucleosidase | - |
| GE167_RS13390 () | 2632569..2633759 | - | 1191 | Protein_2639 | AMP nucleosidase | - |
| GE167_RS13395 () | 2633772..2635001 | - | 1230 | WP_086558215.1 | IS3 family transposase IS2 | Transposase |
| GE167_RS23885 () | 2635043..2635183 | - | 141 | WP_171769178.1 | hypothetical protein | - |
| GE167_RS13405 () | 2635285..2635542 | - | 258 | Protein_2642 | hypothetical protein | - |
| GE167_RS13415 () | 2636892..2638154 | - | 1263 | WP_025759341.1 | Prophage integrase IntA ; Integrase | Integrase |
| GE167_RS13425 () | 2638492..2639289 | - | 798 | WP_001325918.1 | DgsA anti-repressor MtfA | - |
| GE167_RS13435 () | 2639500..2640537 | - | 1038 | WP_004974968.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| GE167_RS13440 () | 2640537..2640740 | - | 204 | WP_025759339.1 | DUF4224 domain-containing protein | - |
| GE167_RS13445 () | 2640799..2641113 | - | 315 | WP_001317924.1 | 3'-5' exonuclease | - |
| GE167_RS13455 () | 2641911..2642327 | + | 417 | WP_005069274.1 | hypothetical protein | - |
| - | 2642909..2642967 | - | 59 | - | - | Antitoxin Detail |
| GE167_RS13465 () | 2642979..2643134 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| GE167_RS13470 () | 2643302..2643580 | + | 279 | WP_000929754.1 | hypothetical protein | - |
| GE167_RS13475 () | 2643582..2644640 | + | 1059 | WP_025759819.1 | DUF968 domain-containing protein | - |
| GE167_RS13480 () | 2644641..2645006 | + | 366 | WP_000140020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| GE167_RS13485 () | 2645003..2645718 | + | 716 | Protein_2655 | bacteriophage antitermination protein Q | - |
| GE167_RS13510 () | 2646514..2646729 | + | 216 | WP_000839572.1 | class II holin family protein | - |
| GE167_RS13515 () | 2646828..2647502 | + | 675 | WP_001088287.1 | IS66 family transposase ISSfl3 | Transposase |
| GE167_RS13520 () | 2647499..2647846 | + | 348 | WP_000631709.1 | IS66 family transposase ISSfl3 | Transposase |
| GE167_RS13525 () | 2647866..2648678 | + | 813 | Protein_2659 | IS66 family transposase ISSfl3 | Transposase |
| GE167_RS13535 () | 2648744..2649901 | + | 1158 | Protein_2660 | IS3 family transposase ISSd1 | Transposase |
| GE167_RS13540 () | 2649944..2650735 | + | 792 | Protein_2661 | IS66 family transposase ISSfl3 | Transposase |
| GE167_RS13545 () | 2650735..2651256 | + | 522 | Protein_2662 | lysozyme RrrD | - |
| GE167_RS13550 () | 2651253..2651717 | + | 465 | WP_000092290.1 | lysis protein | - |
| GE167_RS13555 () | 2651760..2652110 | + | 351 | WP_001139556.1 | HNH endonuclease signature motif containing protein | - |
| GE167_RS13560 () | 2652258..2652740 | + | 483 | WP_024166447.1 | phage terminase small subunit P27 family | - |
| GE167_RS13565 () | 2652740..2654497 | + | 1758 | WP_040235539.1 | terminase large subunit | - |
| GE167_RS13570 () | 2654509..2654691 | + | 183 | WP_000478600.1 | hypothetical protein | - |
| GE167_RS13575 () | 2654691..2655932 | + | 1242 | WP_000466011.1 | phage portal protein | - |
| GE167_RS24325 () | 2655910..2656536 | + | 627 | Protein_2669 | HK97 family phage prohead protease | - |
| GE167_RS24330 () | 2656537..2657640 | + | 1104 | Protein_2670 | phage major capsid protein | - |
| GE167_RS13585 () | 2657685..2658008 | + | 324 | WP_000924704.1 | head-tail connector protein | - |
| GE167_RS13590 () | 2658005..2658421 | + | 417 | WP_000702444.1 | phage head closure protein | - |
| GE167_RS13595 () | 2658387..2658911 | + | 525 | WP_025759103.1 | hypothetical protein | - |
| GE167_RS13600 () | 2658908..2659470 | + | 563 | Protein_2674 | hypothetical protein | - |
| GE167_RS13605 () | 2659480..2659641 | + | 162 | WP_000497744.1 | DUF2635 domain-containing protein | - |
| GE167_RS13610 () | 2659638..2661134 | + | 1497 | WP_000155744.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| GE167_RS13615 () | 2661134..2661490 | + | 357 | WP_001062338.1 | phage tail tube protein | - |
| GE167_RS13620 () | 2661490..2661826 | + | 337 | Protein_2678 | phage tail assembly protein | - |
| GE167_RS13625 () | 2661911..2663860 | + | 1950 | WP_025759099.1 | phage tail tape measure protein | - |
| GE167_RS13630 () | 2663986..2664683 | + | 698 | WP_254000264.1 | IS1 family transposase IS1X2 | Transposase |
| GE167_RS13635 () | 2664699..2665018 | + | 320 | Protein_2681 | phage tail protein | - |
| GE167_RS13640 () | 2664969..2665592 | + | 624 | WP_040234363.1 | DUF4376 domain-containing protein | - |
| GE167_RS13645 () | 2665772..2667415 | - | 1644 | WP_032156999.1 | E3 ubiquitin-protein ligase ipaH3 | VF |
| GE167_RS13650 () | 2667731..2668399 | - | 669 | WP_161550607.1 | class I SAM-dependent methyltransferase | - |
| GE167_RS13655 () | 2668456..2668725 | + | 270 | WP_000937511.1 | tail fiber assembly protein | - |
| GE167_RS13660 () | 2669803..2670453 | - | 651 | WP_001007781.1 | metal-binding protein ZinT | - |
| GE167_RS13665 () | 2670711..2671345 | - | 635 | Protein_2687 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| GE167_RS13670 () | 2671346..2672350 | - | 1005 | Protein_2688 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| GE167_RS13675 () | 2672459..2672872 | - | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| GE167_RS13680 () | 2673005..2673676 | + | 672 | WP_001347103.1 | putative transcriptional regulatory protein YedW | VF |
| GE167_RS13685 () | 2673676..2675034 | + | 1359 | WP_025759261.1 | two-component system sensor histidine kinase HprS | - |
| GE167_RS13690 () | 2675142..2675993 | - | 852 | WP_000218218.1 | protein deglycase HchA | - |
| GE167_RS13700 () | 2677364..2677534 | - | 171 | Protein_2694 | porin | - |
| GE167_RS13705 () | 2677636..2678864 | + | 1229 | WP_171763895.1 | IS3 family transposase IS2 | Transposase |
| GE167_RS13710 () | 2678876..2679586 | - | 711 | Protein_2696 | porin | - |
| GE167_RS13715 () | 2679703..2680848 | + | 1146 | Protein_2697 | IS3 family transposase ISEhe3 | Transposase |
| GE167_RS13720 () | 2680849..2681106 | + | 258 | WP_032155863.1 | cell division protein DrpB | - |
| GE167_RS13725 () | 2681146..2681686 | + | 541 | Protein_2699 | phosphohydrolase | - |
| GE167_RS13730 () | 2681753..2683171 | + | 1419 | WP_025758774.1 | DNA-cytosine methyltransferase | - |
| GE167_RS13735 () | 2683152..2683622 | + | 471 | WP_000228688.1 | VSPR family DNA mismatch endonuclease | - |
| GE167_RS13740 () | 2683611..2684531 | - | 921 | WP_025758775.1 | drug/metabolite exporter YedA | - |
| GE167_RS13745 () | 2684704..2685621 | + | 918 | WP_152030428.1 | DUF808 domain-containing protein | - |
| GE167_RS13750 () | 2685700..2685882 | + | 183 | WP_000009302.1 | DUF2158 domain-containing protein | - |
| GE167_RS13760 () | 2687366..2689060 | + | 1695 | WP_119175972.1 | cellulose biosynthesis regulator diguanylate cyclase DgcQ | - |
| GE167_RS13765 () | 2689057..2689872 | - | 816 | Protein_2707 | mannosyl-3-phosphoglycerate phosphatase-related protein | - |
| GE167_RS13770 () | 2690170..2690397 | - | 228 | WP_005048789.1 | peroxide/acid resistance protein YodD | - |
| GE167_RS13775 () | 2690560..2690748 | + | 189 | WP_000867216.1 | protein DsrB | - |
| GE167_RS13780 () | 2690792..2691415 | - | 624 | WP_000103994.1 | transcriptional regulator RcsA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|