MGE detailed information
MGE type: Prophage MGE length: 70111 bp
Accession: NZ_CP045522 Location: 1378257..1448367 Organism: Shigella flexneri strain 5908.2 Replicon: chromosome
Accession: NZ_CP045522 Location: 1378257..1448367 Organism: Shigella flexneri strain 5908.2 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GE167_RS06720 (1374060) | 1374060..1374812 | - | 753 | WP_001295305.1 | 2,3-diphosphoglycerate-dependent phosphoglycerate mutase | - |
| GE167_RS06725 (1375015) | 1375015..1376055 | - | 1041 | WP_000931412.1 | galactose-1-epimerase | - |
| GE167_RS06730 (1376049) | 1376049..1377197 | - | 1149 | WP_000053437.1 | galactokinase | - |
| GE167_RS06735 (1377201) | 1377201..1378247 | - | 1047 | WP_000191508.1 | galactose-1-phosphate uridylyltransferase | - |
| GE167_RS06740 (1378257) | 1378257..1379273 | - | 1017 | WP_001265430.1 | UDP-glucose 4-epimerase | VF |
| GE167_RS06745 (1379534) | 1379534..1381006 | - | 1473 | WP_000096896.1 | putative ABC transporter ATP-binding protein YlmA | VF |
| GE167_RS06750 (1381074) | 1381074..1381862 | - | 789 | WP_119182116.1 | molybdenum-dependent transcriptional regulator | - |
| GE167_RS06760 (1382767) | 1382767..1382916 | + | 150 | WP_000891515.1 | multidrug efflux pump accessory protein AcrZ | - |
| GE167_RS06765 (1383083) | 1383083..1383856 | + | 774 | WP_025757642.1 | molybdate ABC transporter substrate-binding protein | - |
| GE167_RS06770 (1383856) | 1383856..1384545 | + | 690 | WP_000604036.1 | molybdate ABC transporter permease subunit | - |
| GE167_RS06775 (1384548) | 1384548..1385606 | + | 1059 | WP_000891695.1 | Sulfate/thiosulfate import ATP-binding protein CysA | VF |
| GE167_RS06780 (1385607) | 1385607..1386426 | - | 820 | Protein_1334 | bifunctional pyridoxal phosphate/fructose-1,6-bisphosphate phosphatase | - |
| GE167_RS06785 (1386662) | 1386662..1387105 | - | 444 | WP_075328310.1 | hypothetical protein ; Integrase | Integrase |
| GE167_RS06790 (1387295) | 1387295..1387992 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| GE167_RS06795 (1387927) | 1387927..1388835 | - | 909 | WP_001173291.1 | AAA family ATPase | - |
| GE167_RS06800 (1388841) | 1388841..1389137 | - | 297 | WP_001277359.1 | host-nuclease inhibitor Gam family protein | - |
| GE167_RS06805 (1389115) | 1389115..1390452 | - | 1338 | Protein_1339 | exodeoxyribonuclease VIII | - |
| GE167_RS06810 (1390515) | 1390515..1390933 | + | 419 | Protein_1340 | IS3 family transposase ISSfl10 | Transposase |
| GE167_RS06815 (1390984) | 1390984..1392197 | + | 1214 | WP_171763907.1 | IS3 family transposase IS629 | Transposase |
| GE167_RS06820 (1392237) | 1392237..1394585 | + | 2349 | Protein_1342 | toprim domain-containing protein | - |
| GE167_RS06825 (1394660) | 1394660..1394938 | + | 279 | WP_025757756.1 | hypothetical protein | - |
| GE167_RS06830 (1394935) | 1394935..1395345 | + | 411 | WP_000814621.1 | recombination protein NinB | - |
| GE167_RS06835 (1395342) | 1395342..1395518 | + | 177 | WP_001254220.1 | NinE family protein | - |
| GE167_RS06840 (1395560) | 1395560..1395868 | - | 309 | WP_000147081.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| GE167_RS06845 (1395858) | 1395858..1396088 | - | 231 | WP_236743520.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| GE167_RS06850 (1396101) | 1396101..1397069 | + | 969 | WP_000961310.1 | Rha family phage regulatory protein | - |
| GE167_RS06855 (1397066) | 1397066..1397299 | + | 234 | WP_000618004.1 | hypothetical protein | - |
| GE167_RS06860 (1397286) | 1397286..1398193 | + | 908 | Protein_1350 | DNA-binding protein | - |
| GE167_RS06865 (1398204) | 1398204..1399082 | + | 879 | WP_000988187.1 | ATP-binding protein | - |
| GE167_RS06870 (1399079) | 1399079..1400326 | + | 1248 | Protein_1352 | replicative DNA helicase | - |
| GE167_RS06875 (1400357) | 1400357..1400572 | - | 216 | Protein_1353 | transposase domain-containing protein | - |
| GE167_RS06880 (1400629) | 1400629..1401842 | + | 1214 | WP_171763904.1 | IS3 family transposase IS629 | Transposase |
| GE167_RS06885 (1401883) | 1401883..1403270 | - | 1388 | Protein_1355 | IS66-like element ISSfl3 family transposase | - |
| GE167_RS06890 (1403290) | 1403290..1403636 | - | 347 | Protein_1356 | IS66 family insertion sequence element accessory protein TnpB | - |
| GE167_RS06895 (1403633) | 1403633..1404307 | - | 675 | WP_161550562.1 | IS66 family transposase ISSfl3 | Transposase |
| GE167_RS24155 (1404456) | 1404456..1404557 | + | 102 | Protein_1358 | lysis protein | - |
| GE167_RS06905 (1404646) | 1404646..1405158 | - | 513 | WP_011069285.1 | VTT domain-containing protein | - |
| GE167_RS06910 (1405353) | 1405353..1406117 | + | 765 | WP_152030432.1 | hypothetical protein | - |
| GE167_RS06915 (1406068) | 1406068..1406736 | + | 669 | Protein_1361 | PBSX family phage terminase large subunit | - |
| GE167_RS06920 (1406827) | 1406827..1408055 | + | 1229 | WP_088895425.1 | IS3 family transposase IS2 | Transposase |
| GE167_RS06925 (1408092) | 1408092..1408217 | + | 126 | WP_000586905.1 | DUF2737 family protein | - |
| GE167_RS06930 (1408214) | 1408214..1408438 | + | 225 | WP_000034209.1 | ead/Ea22-like family protein | - |
| GE167_RS06940 (1409643) | 1409643..1409786 | + | 144 | WP_225620332.1 | excisionase | - |
| GE167_RS06945 (1409764) | 1409764..1410834 | + | 1071 | WP_025758499.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| GE167_RS06950 (1410969) | 1410969..1412252 | + | 1284 | WP_001091541.1 | putative acyl-CoA thioester hydrolase | - |
| GE167_RS06955 (1412393) | 1412393..1414573 | - | 2181 | WP_000593939.1 | hydratase | - |
| GE167_RS06960 (1414756) | 1414756..1414923 | - | 168 | Protein_1370 | anion permease | - |
| GE167_RS06970 (1415695) | 1415695..1417014 | - | 1320 | Protein_1372 | anion permease | - |
| GE167_RS06975 (1417090) | 1417090..1418142 | - | 1053 | WP_025759641.1 | 4-oxalomesaconate tautomerase | - |
| GE167_RS06980 (1418233) | 1418233..1418930 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| GE167_RS06985 (1419103) | 1419103..1420056 | + | 954 | Protein_1375 | LysR family transcriptional regulator | - |
| GE167_RS06990 (1420097) | 1420097..1421092 | - | 996 | WP_119182165.1 | 6-phosphogluconolactonase | - |
| GE167_RS07000 (1422227) | 1422227..1423210 | + | 984 | Protein_1378 | E3 ubiquitin-protein ligase ipaH9.8 | VF |
| GE167_RS24160 (1423280) | 1423280..1423384 | - | 105 | Protein_1379 | tail fiber assembly protein | - |
| GE167_RS07005 (1423390) | 1423390..1424007 | - | 618 | WP_161550563.1 | DUF4376 domain-containing protein | - |
| GE167_RS07015 (1424073) | 1424073..1425229 | + | 1157 | WP_094099498.1 | IS3 family transposase ISSd1 | Transposase |
| GE167_RS07020 (1425271) | 1425271..1425980 | + | 710 | Protein_1382 | phage tail tape measure protein | - |
| GE167_RS07025 (1425980) | 1425980..1426309 | + | 330 | WP_000447263.1 | phage tail protein | - |
| GE167_RS07030 (1426309) | 1426309..1427007 | + | 699 | WP_025758205.1 | phage minor tail protein L | - |
| GE167_RS07035 (1427012) | 1427012..1427755 | + | 744 | WP_000194737.1 | C40 family peptidase | - |
| GE167_RS07040 (1427752) | 1427752..1428293 | + | 542 | Protein_1386 | tail assembly protein | - |
| GE167_RS07050 (1428354) | 1428354..1431834 | + | 3481 | Protein_1387 | host specificity protein J | - |
| GE167_RS07055 (1431902) | 1431902..1432501 | + | 600 | WP_152030413.1 | Attachment invasion locus protein | VF |
| GE167_RS07060 (1432565) | 1432565..1433976 | + | 1412 | Protein_1389 | prophage tail fiber N-terminal domain-containing protein | - |
| GE167_RS07065 (1433927) | 1433927..1434550 | + | 624 | WP_161550566.1 | DUF4376 domain-containing protein | - |
| GE167_RS24165 (1434556) | 1434556..1434660 | + | 105 | Protein_1391 | tail fiber assembly protein | - |
| GE167_RS07070 (1434730) | 1434730..1436493 | - | 1764 | WP_000805588.1 | putative E3 ubiquitin-protein ligase ipaH4.5 | VF |
| GE167_RS07075 (1436585) | 1436585..1436671 | + | 87 | Protein_1393 | transposase | - |
| GE167_RS07080 (1436681) | 1436681..1436761 | - | 81 | Protein_1394 | hypothetical protein | - |
| GE167_RS07085 (1436964) | 1436964..1437938 | + | 975 | Protein_1395 | IS3 family transposase IS629 | Transposase |
| GE167_RS07090 (1437890) | 1437890..1438468 | + | 579 | Protein_1396 | DNA transfer protein | - |
| GE167_RS07095 (1438478) | 1438478..1439884 | + | 1407 | WP_047563448.1 | phage DNA ejection protein | - |
| GE167_RS07100 (1439884) | 1439884..1441725 | + | 1842 | WP_005067134.1 | hypothetical protein | - |
| GE167_RS07105 (1441857) | 1441857..1442159 | + | 303 | Protein_1399 | phage head-binding domain-containing protein | - |
| GE167_RS07115 (1443581) | 1443581..1445041 | + | 1461 | WP_025759446.1 | endorhamnosidase | - |
| GE167_RS07120 (1445075) | 1445075..1446076 | - | 1002 | WP_000549610.1 | acyltransferase | - |
| GE167_RS07125 (1446232) | 1446232..1446315 | - | 84 | Protein_1403 | hypothetical protein | - |
| GE167_RS07130 (1446630) | 1446630..1447100 | - | 471 | WP_000680095.1 | kinase inhibitor | - |
| GE167_RS07135 (1447078) | 1447078..1448367 | - | 1290 | WP_005048541.1 | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase | VF |
| GE167_RS07140 (1448454) | 1448454..1449494 | + | 1041 | WP_000951214.1 | biotin synthase BioB | - |
| GE167_RS07145 (1449491) | 1449491..1450645 | + | 1155 | WP_000118810.1 | 8-amino-7-oxononanoate synthase | - |
| GE167_RS07150 (1450632) | 1450632..1451387 | + | 756 | WP_000246759.1 | malonyl-ACP O-methyltransferase BioC | - |
| GE167_RS07155 (1451380) | 1451380..1452057 | + | 678 | WP_025759439.1 | dethiobiotin synthase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|