MGE detailed information
MGE type: Genomic_island MGE length: 54572 bp
Accession: NZ_CP045434 Location: 1863472..1918043 Organism: Sphingomonas ginsengisoli An et al. 2013 strain KACC 16858 Replicon: chromosome
Accession: NZ_CP045434 Location: 1863472..1918043 Organism: Sphingomonas ginsengisoli An et al. 2013 strain KACC 16858 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GCU42_RS08955 () | 1858644..1859102 | + | 459 | WP_114227198.1 | hypothetical protein | - |
| GCU42_RS08960 () | 1859099..1860601 | - | 1503 | WP_114227794.1 | peptidase S10 | - |
| GCU42_RS08965 () | 1860741..1861013 | + | 273 | WP_114227199.1 | DUF2171 domain-containing protein | - |
| GCU42_RS08970 () | 1861128..1862879 | + | 1752 | WP_114227200.1 | EAL domain-containing protein | - |
| GCU42_RS08975 () | 1863472..1866009 | - | 2538 | WP_114227201.1 | S8 family peptidase | - |
| GCU42_RS08980 () | 1866078..1867070 | - | 993 | WP_114227202.1 | ATP-binding protein | - |
| GCU42_RS08985 () | 1867388..1868521 | - | 1134 | WP_114227203.1 | DUF2235 domain-containing protein | - |
| GCU42_RS08990 () | 1868949..1869572 | + | 624 | WP_114227204.1 | type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein | Antitoxin Detail |
| GCU42_RS08995 () | 1869565..1870542 | + | 978 | WP_114227205.1 | nucleotidyl transferase AbiEii/AbiGii toxin family protein | Toxin Detail |
| GCU42_RS09000 () | 1870550..1871257 | - | 708 | WP_152569530.1 | Protein phosphatase PrpC | VF |
| GCU42_RS09005 () | 1871494..1872198 | - | 705 | WP_152569531.1 | hypothetical protein | - |
| GCU42_RS09010 () | 1872271..1872960 | - | 690 | WP_114227207.1 | hypothetical protein | - |
| GCU42_RS09015 () | 1872953..1873198 | - | 246 | WP_152569532.1 | hypothetical protein | - |
| GCU42_RS09020 () | 1873507..1874430 | + | 924 | WP_152569533.1 | hypothetical protein | - |
| GCU42_RS09025 () | 1874995..1875723 | - | 729 | WP_152569534.1 | hypothetical protein | - |
| GCU42_RS09030 () | 1875845..1876321 | - | 477 | WP_114227210.1 | hypothetical protein | - |
| GCU42_RS09035 () | 1876361..1876948 | - | 588 | WP_152569535.1 | hypothetical protein | - |
| GCU42_RS09045 () | 1877541..1878497 | - | 957 | WP_114227213.1 | DUF1738 domain-containing protein | - |
| GCU42_RS09050 () | 1878517..1879584 | - | 1068 | WP_152569536.1 | hypothetical protein | - |
| GCU42_RS09055 () | 1880212..1880727 | - | 516 | WP_114227215.1 | hypothetical protein | - |
| GCU42_RS09060 () | 1880905..1881228 | + | 324 | WP_114227795.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| GCU42_RS09065 () | 1881336..1882070 | + | 735 | WP_162789191.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| GCU42_RS09070 () | 1882178..1882864 | - | 687 | WP_114227217.1 | transporter | - |
| GCU42_RS09075 () | 1882869..1883840 | - | 972 | WP_205214954.1 | cation diffusion facilitator family transporter | - |
| GCU42_RS09080 () | 1883933..1884271 | - | 339 | WP_114227797.1 | DUF190 domain-containing protein | - |
| GCU42_RS09085 () | 1884286..1887549 | - | 3264 | WP_152569537.1 | CusA/CzcA family heavy metal efflux RND transporter | - |
| GCU42_RS09090 () | 1887555..1888802 | - | 1248 | WP_114227218.1 | efflux RND transporter periplasmic adaptor subunit | - |
| GCU42_RS09095 () | 1888807..1890072 | - | 1266 | WP_114227219.1 | TolC family protein | - |
| GCU42_RS09105 () | 1891495..1892148 | - | 654 | WP_114227799.1 | cation diffusion facilitator family transporter | - |
| GCU42_RS09110 () | 1892185..1892655 | + | 471 | WP_114227221.1 | helix-turn-helix domain-containing protein | - |
| GCU42_RS09115 () | 1892770..1894710 | + | 1941 | WP_114227222.1 | FTR1 family protein | - |
| GCU42_RS15245 () | 1895151..1895615 | - | 465 | WP_205214955.1 | DUF305 domain-containing protein | - |
| GCU42_RS09125 () | 1895953..1896600 | - | 648 | WP_114227223.1 | DsbA family protein | - |
| GCU42_RS09130 () | 1896718..1897308 | - | 591 | WP_205214956.1 | DUF305 domain-containing protein | - |
| GCU42_RS09135 () | 1897484..1898068 | - | 585 | WP_114227224.1 | cytochrome c | - |
| GCU42_RS09140 () | 1898134..1898649 | - | 516 | WP_114227225.1 | nuclear transport factor 2 family protein | - |
| GCU42_RS09145 () | 1898640..1899935 | - | 1296 | WP_114227802.1 | copper resistance protein B | - |
| GCU42_RS09150 () | 1899949..1902036 | - | 2088 | WP_114227226.1 | copper resistance system multicopper oxidase | - |
| GCU42_RS09155 () | 1902102..1902671 | - | 570 | WP_114227227.1 | RNA polymerase sigma factor | - |
| GCU42_RS09160 () | 1902668..1903108 | - | 441 | WP_114227228.1 | periplasmic heavy metal sensor | - |
| GCU42_RS09170 () | 1903507..1903875 | + | 369 | WP_114227230.1 | copper homeostasis periplasmic binding protein CopC | - |
| GCU42_RS09175 () | 1903880..1904806 | + | 927 | WP_114227231.1 | copper homeostasis membrane protein CopD | - |
| GCU42_RS09180 () | 1904892..1905224 | - | 333 | WP_114227232.1 | four-helix bundle copper-binding protein | - |
| GCU42_RS09185 () | 1905317..1906198 | - | 882 | WP_114227803.1 | DUF4396 domain-containing protein | - |
| GCU42_RS09190 () | 1906267..1907580 | - | 1314 | WP_114227233.1 | type II restriction endonuclease | - |
| GCU42_RS09195 () | 1907902..1910343 | + | 2442 | WP_205214957.1 | heavy metal translocating P-type ATPase | - |
| GCU42_RS09200 () | 1910447..1910782 | + | 336 | WP_114227235.1 | hypothetical protein | - |
| GCU42_RS09205 () | 1910878..1912140 | + | 1263 | WP_114227236.1 | TolC family protein | - |
| GCU42_RS09210 () | 1912137..1913363 | + | 1227 | WP_114227237.1 | efflux RND transporter periplasmic adaptor subunit | - |
| GCU42_RS09215 () | 1913360..1916506 | + | 3147 | WP_114227238.1 | efflux RND transporter permease subunit | - |
| GCU42_RS09220 () | 1916573..1916986 | - | 414 | WP_114227239.1 | arsenate reductase (glutaredoxin) | - |
| GCU42_RS09225 () | 1916983..1917642 | - | 660 | WP_205214980.1 | aquaporin | - |
| GCU42_RS09230 () | 1917681..1918043 | - | 363 | WP_114227240.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| GCU42_RS09235 () | 1918113..1918811 | + | 699 | WP_205214958.1 | arsenical resistance protein ArsH | - |
| GCU42_RS09240 () | 1919166..1919552 | + | 387 | Protein_1832 | arsenical resistance protein ArsH | - |
| GCU42_RS09250 () | 1920133..1920648 | + | 516 | WP_152569539.1 | hypothetical protein | - |
| GCU42_RS09255 () | 1920645..1921421 | - | 777 | WP_114227804.1 | class II aldolase/adducin family protein | - |
| GCU42_RS09260 () | 1921457..1922098 | - | 642 | WP_114227243.1 | maleylacetoacetate isomerase | - |
| GCU42_RS09265 () | 1922109..1922525 | - | 417 | WP_114227244.1 | acyl-CoA thioesterase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|