MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 120832 bp
Accession: NZ_CP045346 Location: 1..120832 Organism: Labrenzia sp. THAF187b Replicon: plasmid pTHAF187b_b
Accession: NZ_CP045346 Location: 1..120832 Organism: Labrenzia sp. THAF187b Replicon: plasmid pTHAF187b_b
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FIV03_RS30310 () | 686..1156 | - | 471 | WP_152508022.1 | conjugal transfer protein TrbH | - |
| FIV03_RS30315 () | 1153..1986 | - | 834 | WP_152508023.1 | P-type conjugative transfer protein TrbG | - |
| FIV03_RS30320 () | 2016..2678 | - | 663 | WP_062492203.1 | conjugal transfer protein TrbF | - |
| FIV03_RS30325 () | 2694..3911 | - | 1218 | WP_152508024.1 | P-type conjugative transfer protein TrbL | - |
| FIV03_RS30330 () | 3932..4174 | - | 243 | WP_152508025.1 | hypothetical protein | - |
| FIV03_RS30335 () | 4179..4973 | - | 795 | WP_152508026.1 | P-type conjugative transfer protein TrbJ | - |
| FIV03_RS30340 () | 4951..7398 | - | 2448 | WP_152508027.1 | conjugal transfer protein TrbE | - |
| FIV03_RS30345 () | 7401..7697 | - | 297 | WP_077294672.1 | conjugal transfer protein TrbD | - |
| FIV03_RS30350 () | 7690..8049 | - | 360 | WP_152508028.1 | TrbC/VirB2 family protein | - |
| FIV03_RS30355 () | 8039..9052 | - | 1014 | WP_152508029.1 | Type IV secretion system protein PtlH | VF |
| FIV03_RS30360 () | 9701..11044 | + | 1344 | WP_152508030.1 | hypothetical protein | - |
| FIV03_RS30365 () | 11050..11586 | + | 537 | WP_077294835.1 | Rrf2 family transcriptional regulator | - |
| FIV03_RS30370 () | 11746..12264 | + | 519 | WP_077294832.1 | thermonuclease family protein | - |
| FIV03_RS30375 () | 12254..12778 | - | 525 | WP_152508032.1 | IS66 family transposase ISPre3 | Transposase |
| FIV03_RS30380 () | 12838..13185 | - | 348 | WP_152508033.1 | IS66 family transposase ISAzs18 | Transposase |
| FIV03_RS30385 () | 13182..13529 | - | 348 | WP_074556315.1 | IS66 family transposase ISAli15 | Transposase |
| FIV03_RS30390 () | 13662..14759 | - | 1098 | WP_152508034.1 | Fic family protein | - |
| FIV03_RS30395 () | 14992..16737 | + | 1746 | WP_173014039.1 | arsenical pump-driving ATPase | - |
| FIV03_RS30400 () | 16821..17173 | - | 353 | Protein_19 | hypothetical protein | - |
| FIV03_RS30405 () | 17278..18216 | - | 939 | Protein_20 | Transposon Tn10 TetD protein | VF |
| FIV03_RS30410 () | 18213..19415 | - | 1203 | WP_152508036.1 | CoA transferase | - |
| FIV03_RS30415 () | 19415..20569 | - | 1155 | WP_152508055.1 | iron-containing alcohol dehydrogenase | - |
| FIV03_RS30420 () | 20587..21750 | - | 1164 | WP_050474492.1 | acyl-CoA dehydrogenase family protein | - |
| FIV03_RS30425 () | 21765..22556 | - | 792 | WP_050474493.1 | IclR family transcriptional regulator | - |
| FIV03_RS30430 () | 22732..24186 | + | 1455 | WP_173014040.1 | NAD-dependent succinate-semialdehyde dehydrogenase | - |
| FIV03_RS30435 () | 24195..26270 | + | 2076 | WP_050474494.1 | FAD-dependent oxidoreductase | - |
| FIV03_RS30440 () | 26463..27365 | + | 903 | WP_050474495.1 | Monoterpene epsilon-lactone hydrolase | VF |
| FIV03_RS30445 () | 27483..29120 | + | 1638 | WP_050474496.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| FIV03_RS30450 () | 29213..29968 | + | 756 | WP_050474497.1 | Cyclopentanol dehydrogenase | VF |
| FIV03_RS30455 () | 30037..30798 | + | 762 | WP_050474498.1 | electron transfer flavoprotein subunit beta/FixA family protein | - |
| FIV03_RS30460 () | 30800..31726 | + | 927 | WP_152508037.1 | FAD-binding protein | - |
| FIV03_RS30465 () | 31751..32950 | + | 1200 | WP_050474500.1 | 3-oxoadipyl-CoA thiolase | - |
| FIV03_RS30470 () | 33060..33698 | + | 639 | WP_050474501.1 | CDGSH iron-sulfur domain-containing protein | - |
| FIV03_RS30475 () | 33623..34168 | + | 546 | Protein_34 | NAD(P)H-dependent oxidoreductase | - |
| FIV03_RS30480 () | 34270..35259 | + | 990 | WP_152508038.1 | TIM barrel protein | - |
| FIV03_RS30485 () | 35290..36336 | + | 1047 | WP_152508039.1 | substrate-binding domain-containing protein | - |
| FIV03_RS30490 () | 36405..37925 | + | 1521 | WP_152508040.1 | Ribose import ATP-binding protein RbsA | VF |
| FIV03_RS30495 () | 37931..38905 | + | 975 | WP_152508041.1 | ABC transporter permease | - |
| FIV03_RS30500 () | 38902..39774 | + | 873 | WP_152508042.1 | MurR/RpiR family transcriptional regulator | - |
| FIV03_RS30505 () | 39781..40659 | + | 879 | WP_152508043.1 | Ribokinase | VF |
| FIV03_RS30510 () | 40822..41817 | + | 996 | WP_077294751.1 | IS30 family transposase ISRssp4 | Transposase |
| FIV03_RS30515 () | 42000..43424 | + | 1425 | WP_152508018.1 | ISNCY family transposase ISRel10 | Transposase |
| FIV03_RS30520 () | 43766..44146 | + | 381 | WP_152508017.1 | DUF1232 domain-containing protein | - |
| FIV03_RS30525 () | 44174..45019 | + | 846 | WP_152508016.1 | DUF1194 domain-containing protein | - |
| FIV03_RS30530 () | 45387..46817 | - | 1431 | WP_062492166.1 | HD domain-containing protein | - |
| FIV03_RS30535 () | 46882..47466 | - | 585 | WP_152508015.1 | AAA family ATPase | - |
| FIV03_RS30540 () | 47463..48047 | - | 585 | WP_062492232.1 | 3'-5' exonuclease | - |
| FIV03_RS30545 () | 48044..49156 | - | 1113 | WP_173014041.1 | radical SAM protein | - |
| FIV03_RS30550 () | 49603..49797 | + | 195 | WP_062492162.1 | hypothetical protein | - |
| FIV03_RS30555 () | 49951..52677 | + | 2727 | WP_152508054.1 | N-6 DNA methylase | - |
| FIV03_RS30560 () | 52678..53394 | + | 717 | WP_152508014.1 | hypothetical protein | - |
| FIV03_RS30565 () | 53709..53933 | + | 225 | WP_062492156.1 | helix-turn-helix domain-containing protein | - |
| FIV03_RS30570 () | 53930..54298 | - | 369 | WP_062492154.1 | thermonuclease family protein | - |
| FIV03_RS30575 () | 54295..54921 | - | 627 | WP_062492152.1 | conjugal transfer protein TraH | - |
| FIV03_RS30580 () | 54926..56164 | - | 1239 | WP_077294757.1 | conjugal transfer protein TraB | - |
| FIV03_RS30585 () | 56085..56753 | - | 669 | WP_152508013.1 | conjugative transfer signal peptidase TraF | - |
| FIV03_RS30590 () | 56639..60016 | - | 3378 | WP_152508012.1 | Mobilization protein A | Relaxase |
| FIV03_RS30595 () | 60233..61375 | + | 1143 | WP_152508066.1 | hypothetical protein | - |
| FIV03_RS30600 () | 61687..61938 | + | 252 | WP_062492145.1 | hypothetical protein | - |
| FIV03_RS30605 () | 61985..62242 | + | 258 | WP_062492143.1 | conjugal transfer protein TraD | - |
| FIV03_RS30610 () | 62163..64091 | + | 1929 | WP_077294766.1 | Protein VirD4 | VF |
| FIV03_RS30615 () | 64249..64536 | - | 288 | WP_062492139.1 | hypothetical protein | - |
| FIV03_RS30620 () | 64841..65185 | - | 345 | WP_062492226.1 | DUF736 family protein | - |
| FIV03_RS30625 () | 65461..67179 | - | 1719 | WP_152508058.1 | Fic family protein | - |
| FIV03_RS30630 () | 67244..67450 | - | 207 | WP_062492137.1 | antitoxin VbhA family protein | - |
| FIV03_RS30635 () | 67675..68082 | - | 408 | WP_062492135.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| FIV03_RS30640 () | 68079..68321 | - | 243 | WP_082809967.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| FIV03_RS30645 () | 68436..69692 | - | 1257 | WP_062492133.1 | replication protein C | - |
| FIV03_RS30650 () | 69916..70917 | - | 1002 | WP_152508057.1 | plasmid partitioning protein RepB | - |
| FIV03_RS30655 () | 70921..72114 | - | 1194 | WP_088665297.1 | Sporulation initiation inhibitor protein Soj | VF |
| FIV03_RS30660 () | 72601..74409 | + | 1809 | WP_152508056.1 | phosphomethylpyrimidine synthase ThiC | - |
| FIV03_RS30665 () | 75185..76030 | - | 846 | WP_062492124.1 | methyltransferase | - |
| FIV03_RS30670 () | 76034..76489 | - | 456 | WP_062492122.1 | hypothetical protein | - |
| FIV03_RS30675 () | 77069..78319 | - | 1251 | WP_152512499.1 | IS110 family transposase | - |
| FIV03_RS30680 () | 78959..79411 | + | 453 | WP_152508077.1 | MucR family transcriptional regulator | - |
| FIV03_RS30685 () | 79426..79872 | - | 447 | WP_152508076.1 | hypothetical protein | - |
| FIV03_RS30690 () | 79873..80106 | - | 234 | WP_152508075.1 | hypothetical protein | - |
| FIV03_RS30695 () | 80121..80570 | - | 450 | WP_152512500.1 | hypothetical protein | - |
| FIV03_RS30700 () | 80542..80796 | - | 255 | WP_062492109.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| FIV03_RS30705 () | 81186..81467 | - | 282 | WP_062492108.1 | hypothetical protein | - |
| FIV03_RS30710 () | 81674..82075 | + | 402 | Protein_81 | Type IV secretion system protein VirB11 | VF |
| FIV03_RS30715 () | 82065..82424 | + | 360 | WP_152508073.1 | TrbC/VirB2 family protein | - |
| FIV03_RS30720 () | 82417..82713 | + | 297 | WP_062492104.1 | conjugal transfer protein TrbD | - |
| FIV03_RS30725 () | 82773..83237 | + | 465 | Protein_84 | CbtA family protein | - |
| FIV03_RS30730 () | 83315..83839 | + | 525 | WP_062492102.1 | hypothetical protein | - |
| FIV03_RS30735 () | 83842..84168 | - | 327 | WP_077294808.1 | DUF1636 family protein | - |
| FIV03_RS30740 () | 84703..85356 | + | 654 | WP_062492099.1 | thioredoxin domain-containing protein | - |
| FIV03_RS30745 () | 85471..87474 | + | 2004 | WP_062492224.1 | Murein DD-endopeptidase MepM | VF |
| FIV03_RS30750 () | 87762..88268 | - | 507 | Protein_89 | phosphatase PAP2 family protein | - |
| FIV03_RS30755 () | 88308..88952 | - | 645 | WP_152508072.1 | plasmid pRiA4b ORF-3 family protein | - |
| FIV03_RS30760 () | 88949..90595 | - | 1647 | WP_152508071.1 | IS66 family transposase IS66 | Transposase |
| FIV03_RS30765 () | 90641..90988 | - | 348 | WP_152508070.1 | IS66 family transposase IS66 | Transposase |
| FIV03_RS30770 () | 90985..91422 | - | 438 | WP_152508069.1 | IS66 family transposase IS66 | Transposase |
| FIV03_RS30775 () | 91739..92857 | - | 1119 | WP_152508068.1 | IS110 family transposase ISMtsp6 | Transposase |
| FIV03_RS30780 () | 92986..93375 | - | 390 | WP_209010120.1 | hypothetical protein | - |
| FIV03_RS30785 () | 93745..94200 | - | 456 | WP_062492097.1 | Transcriptional regulator MntR | VF |
| FIV03_RS30790 () | 94320..96173 | + | 1854 | WP_152512501.1 | cytochrome C | - |
| FIV03_RS30795 () | 96173..97030 | + | 858 | WP_008188307.1 | phosphate/phosphite/phosphonate ABC transporter substrate-binding protein | - |
| FIV03_RS30800 () | 97027..97797 | + | 771 | WP_077294817.1 | Phosphate-import ATP-binding protein PhnC | VF |
| FIV03_RS30805 () | 97797..98540 | + | 744 | WP_173014037.1 | phosphonate ABC transporter, permease protein PhnE | - |
| FIV03_RS30810 () | 98705..99229 | - | 525 | WP_134853290.1 | transglutaminase-like cysteine peptidase | - |
| FIV03_RS30815 () | 99864..100448 | + | 585 | WP_040450252.1 | DedA family protein | - |
| FIV03_RS30820 () | 100698..101678 | + | 981 | WP_040450304.1 | murein L,D-transpeptidase | - |
| FIV03_RS30825 () | 101718..102470 | - | 753 | WP_008188302.1 | DUF1624 domain-containing protein | - |
| FIV03_RS30830 () | 102820..104955 | - | 2136 | WP_081450442.1 | cadmium-translocating P-type ATPase | - |
| FIV03_RS30835 () | 105604..106107 | + | 504 | WP_077294877.1 | L,D-transpeptidase | - |
| FIV03_RS30840 () | 106465..107070 | + | 606 | WP_055971942.1 | Tn3 family transposase TnpR_ISMpo10 | Transposase |
| FIV03_RS30845 () | 107086..110055 | + | 2970 | WP_072495413.1 | Tn3 family transposase TnpA_ISAcsp1 | Transposase |
| FIV03_RS30850 () | 110733..111251 | + | 519 | WP_152508049.1 | helix-turn-helix transcriptional regulator | - |
| FIV03_RS30855 () | 111616..111963 | - | 348 | WP_152508048.1 | hypothetical protein | - |
| FIV03_RS31705 () | 112137..112304 | + | 168 | WP_165222187.1 | hypothetical protein | - |
| FIV03_RS30860 () | 112317..112949 | + | 633 | WP_152508047.1 | zeta toxin family protein | - |
| FIV03_RS31710 () | 113027..113191 | - | 165 | WP_173014038.1 | hypothetical protein | - |
| FIV03_RS30865 () | 113762..114103 | - | 342 | WP_152508046.1 | hypothetical protein | - |
| FIV03_RS30870 () | 114210..114509 | - | 300 | WP_152508045.1 | hypothetical protein | - |
| FIV03_RS30875 () | 114534..115217 | - | 684 | WP_152508044.1 | SOS response-associated peptidase | - |
| FIV03_RS30880 () | 115821..116736 | + | 916 | Protein_117 | DMT family transporter | - |
| FIV03_RS30885 () | 117425..119209 | + | 1785 | WP_152508019.1 | HAMP domain-containing protein | - |
| FIV03_RS30890 () | 119397..119876 | + | 480 | WP_152508020.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|