MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 70303 bp
Accession: NZ_CP045147 Location: 1..70303 Organism: Yersinia pestis strain SCPM-O-B-6899 (231) Replicon: plasmid pCD
Accession: NZ_CP045147 Location: 1..70303 Organism: Yersinia pestis strain SCPM-O-B-6899 (231) Replicon: plasmid pCD
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GCK69_RS23010 () | 1..879 | + | 879 | WP_002213292.1 | incFII family plasmid replication initiator RepA | - |
| GCK69_RS22225 () | 2052..2291 | + | 240 | WP_002213291.1 | hypothetical protein | - |
| GCK69_RS22235 () | 2469..2781 | + | 313 | Protein_3 | IS3 family transposase ISKpn37 | Transposase |
| GCK69_RS22240 () | 3037..3486 | + | 450 | WP_002229809.1 | hypothetical protein | VF |
| GCK69_RS22245 () | 3494..5692 | + | 2199 | WP_002213290.1 | Protein kinase YpkA | VF |
| GCK69_RS22250 () | 6088..6954 | + | 867 | WP_002225474.1 | Effector protein YopJ | VF |
| GCK69_RS22255 () | 7540..8067 | - | 528 | Protein_7 | IS3 family transposase ISYpe1 | Transposase |
| GCK69_RS22260 () | 8132..8914 | - | 783 | WP_001317493.1 | IS21 family transposase IS100kyp | Transposase |
| GCK69_RS22265 () | 8911..9933 | - | 1023 | WP_000255944.1 | IS21 family transposase IS100kyp | Transposase |
| GCK69_RS22270 () | 10078..10314 | + | 237 | Protein_10 | transposase domain-containing protein | - |
| GCK69_RS22275 () | 10597..12003 | + | 1407 | WP_002213278.1 | Tyrosine-protein phosphatase YopH | VF |
| GCK69_RS22280 () | 12224..12496 | - | 273 | Protein_12 | transposase | - |
| GCK69_RS22285 () | 12515..13544 | - | 1030 | Protein_13 | IS3 family transposase | - |
| GCK69_RS22295 () | 14092..14439 | - | 348 | WP_002212907.1 | Yop proteins translocation protein M | VF |
| GCK69_RS22300 () | 14664..15329 | - | 666 | WP_010981371.1 | Yop proteins translocation protein L | VF |
| GCK69_RS22305 () | 15275..15904 | - | 630 | WP_002361471.1 | Yop proteins translocation protein K | VF |
| GCK69_RS22310 () | 15904..16638 | - | 735 | WP_002212912.1 | Yop proteins translocation lipoprotein J | VF |
| GCK69_RS22315 () | 16645..16992 | - | 348 | WP_002212914.1 | Yop proteins translocation protein I | VF |
| GCK69_RS22320 () | 16993..17490 | - | 498 | WP_002212915.1 | Yop proteins translocation protein H | VF |
| GCK69_RS22325 () | 17487..17834 | - | 348 | WP_002229801.1 | Putative Yop proteins translocation protein G | VF |
| GCK69_RS22330 () | 17836..18099 | - | 264 | WP_002212916.1 | Yop proteins translocation protein F | VF |
| GCK69_RS22335 () | 18100..18300 | - | 201 | WP_002212917.1 | Putative Yop proteins translocation protein E | VF |
| GCK69_RS22340 () | 18297..19556 | - | 1260 | WP_002212919.1 | Yop proteins translocation protein D | VF |
| GCK69_RS22345 () | 19553..21376 | - | 1824 | WP_002212923.1 | Yop proteins translocation protein C | VF |
| GCK69_RS22350 () | 21382..21795 | - | 414 | WP_002212925.1 | Chaperone protein YscB | VF |
| GCK69_RS22355 () | 22021..22119 | - | 99 | WP_002229797.1 | type III secretion system protein YscA | - |
| GCK69_RS22360 () | 22198..23013 | - | 816 | WP_002212931.1 | Virulence regulon transcriptional activator VirF | VF |
| GCK69_RS22365 () | 23137..23532 | - | 396 | WP_002222527.1 | Exoenzyme S synthesis protein B | VF |
| GCK69_RS22370 () | 24108..25172 | - | 1065 | WP_002212936.1 | Yop proteins translocation protein U | VF |
| GCK69_RS22375 () | 25172..25957 | - | 786 | WP_002212938.1 | Surface presentation of antigens protein SpaR | VF |
| GCK69_RS22380 () | 25954..26220 | - | 267 | WP_002212945.1 | hypothetical protein | VF |
| GCK69_RS22385 () | 26222..26875 | - | 654 | WP_002212947.1 | Surface presentation of antigens protein SpaP | VF |
| GCK69_RS22390 () | 26872..27795 | - | 924 | WP_002212948.1 | Yop proteins translocation protein Q | VF |
| GCK69_RS22395 () | 27792..29159 | - | 1368 | WP_002212950.1 | hypothetical protein | VF |
| GCK69_RS22400 () | 29159..29623 | - | 465 | WP_002212952.1 | Yop proteins translocation protein O | VF |
| GCK69_RS22405 () | 29620..30939 | - | 1320 | WP_002212955.1 | putative ATP synthase YscN | VF |
| GCK69_RS22410 () | 31137..32018 | + | 882 | WP_002212958.1 | Outer membrane protein YopN | VF |
| GCK69_RS22415 () | 31999..32277 | + | 279 | WP_002212965.1 | Protein TyeA | VF |
| GCK69_RS22420 () | 32264..32635 | + | 372 | WP_002229794.1 | Chaperone protein SycN | VF |
| GCK69_RS22425 () | 32632..33000 | + | 369 | WP_002212969.1 | Yop proteins translocation protein X | VF |
| GCK69_RS22430 () | 32997..33341 | + | 345 | WP_002229791.1 | Chaperone protein YscY | VF |
| GCK69_RS22435 () | 33328..35442 | + | 2115 | WP_002212971.1 | Invasion protein InvA | VF |
| GCK69_RS22440 () | 35439..35879 | + | 441 | WP_002220918.1 | hypothetical protein | VF |
| GCK69_RS22445 () | 35921..36208 | + | 288 | WP_002212973.1 | hypothetical protein | VF |
| GCK69_RS22450 () | 36210..37190 | + | 981 | WP_002212981.1 | Virulence-associated V antigen | VF |
| GCK69_RS22455 () | 37203..37709 | + | 507 | WP_002222758.1 | Chaperone protein IpgC | VF |
| GCK69_RS22460 () | 37687..38892 | + | 1206 | WP_002212985.1 | Protein YopB | VF |
| GCK69_RS22465 () | 38911..39831 | + | 921 | WP_002212987.1 | Protein YopD | VF |
| GCK69_RS22470 () | 40299..40936 | - | 638 | Protein_49 | IS6 family transposase | - |
| GCK69_RS22475 () | 40957..41166 | + | 210 | WP_002229781.1 | hypothetical protein | - |
| GCK69_RS22480 () | 41560..42789 | + | 1230 | WP_002229779.1 | Outer membrane protein YopM | VF |
| GCK69_RS22485 () | 42832..43149 | - | 318 | Protein_52 | IS256 family transposase ISSod4 | Transposase |
| GCK69_RS22490 () | 43031..43276 | - | 246 | WP_116442925.1 | transposase | - |
| GCK69_RS22495 () | 43279..43497 | + | 219 | Protein_54 | IS6 family transposase | - |
| GCK69_RS22500 () | 44025..44444 | - | 420 | WP_002222515.1 | hypothetical protein | - |
| GCK69_RS22505 () | 44462..44743 | - | 282 | Protein_56 | DDE-type integrase/transposase/recombinase | - |
| GCK69_RS22510 () | 45149..45547 | - | 399 | WP_002213004.1 | Chaperone protein SycT | VF |
| GCK69_RS22515 () | 45547..46515 | - | 969 | WP_002213006.1 | Cysteine protease YopT | VF |
| GCK69_RS22520 () | 47015..47563 | + | 549 | WP_002213007.1 | hypothetical protein | VF |
| GCK69_RS22525 () | 47722..48015 | + | 294 | Protein_60 | IS3 family transposase | - |
| GCK69_RS22535 () | 48161..48790 | + | 630 | WP_002229770.1 | hypothetical protein | - |
| GCK69_RS22540 () | 48897..50042 | + | 1146 | Protein_62 | IS3 family transposase | - |
| GCK69_RS22550 () | 50802..51968 | + | 1167 | WP_002220902.1 | Sporulation initiation inhibitor protein Soj | VF |
| GCK69_RS22555 () | 51965..52930 | + | 966 | WP_002213354.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| GCK69_RS22830 () | 53090..53326 | + | 237 | WP_154020274.1 | hypothetical protein | - |
| GCK69_RS23015 () | 53475..53648 | - | 174 | WP_002213357.1 | hypothetical protein | - |
| GCK69_RS22565 () | 53735..54027 | + | 293 | Protein_67 | IS6 family transposase ISEas1 | Transposase |
| GCK69_RS22570 () | 54193..54435 | + | 243 | WP_002224342.1 | type II toxin-antitoxin system ParD family antitoxin | Antitoxin Detail |
| GCK69_RS22575 () | 54428..54727 | + | 300 | WP_002213360.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| GCK69_RS22580 () | 54867..55526 | - | 660 | WP_002229754.1 | Outer membrane virulence protein YopE | VF |
| GCK69_RS22585 () | 55720..56112 | + | 393 | WP_002213403.1 | YopE regulator | VF |
| GCK69_RS22590 () | 56175..56819 | - | 645 | Protein_72 | IS3 family transposase ISYen3 | Transposase |
| GCK69_RS22595 () | 56922..58094 | + | 1173 | WP_002220893.1 | IS21 family transposase IS21 | Transposase |
| GCK69_RS22600 () | 58094..58492 | + | 399 | Protein_74 | IS21 family transposase IS21 | Transposase |
| GCK69_RS22605 () | 58869..59294 | + | 426 | WP_002213267.1 | hypothetical protein | VF |
| GCK69_RS22620 () | 60641..60970 | - | 330 | WP_002229829.1 | hypothetical protein | - |
| GCK69_RS22625 () | 61109..61573 | - | 465 | WP_002224338.1 | hypothetical protein | - |
| GCK69_RS22630 () | 61592..62143 | - | 552 | WP_002213258.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| GCK69_RS22635 () | 62307..64622 | + | 2316 | WP_002213256.1 | Tn3 family transposase ISEc63 | Transposase |
| GCK69_RS22640 () | 64655..65005 | - | 351 | Protein_81 | IS3 family transposase IS1351 | Transposase |
| GCK69_RS22645 () | 65605..66908 | + | 1304 | Protein_82 | Adhesin YadA | VF |
| GCK69_RS23020 () | 66978..67136 | + | 159 | Protein_83 | EamA family transporter | - |
| GCK69_RS22655 () | 67234..67503 | - | 270 | WP_042469136.1 | transposase | - |
| GCK69_RS22660 () | 67572..68030 | + | 459 | WP_002213246.1 | hypothetical protein | - |
| GCK69_RS22670 () | 68202..68519 | + | 318 | WP_002213244.1 | IS3 family transposase ISKpn37 | Transposase |
| GCK69_RS22675 () | 68543..68950 | + | 408 | WP_002213294.1 | IS3 family transposase ISKpn37 | Transposase |
| GCK69_RS22680 () | 68933..69241 | - | 309 | Protein_88 | DDE-type integrase/transposase/recombinase | - |
| GCK69_RS22685 () | 69367..69615 | + | 249 | WP_002233137.1 | Phospholipase D | VF |
| GCK69_RS22690 () | 69753..70007 | + | 255 | WP_002229817.1 | replication regulatory protein RepA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|