MGE detailed information
MGE type: Conjugative plasmid MGE length: 107359 bp
Accession: NZ_CP044977 Location: 1..107359 Organism: Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) Replicon: plasmid pPBL-H3_B2-2
Accession: NZ_CP044977 Location: 1..107359 Organism: Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B2) Replicon: plasmid pPBL-H3_B2-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F9Z45_RS22170 () | 1..1212 | + | 1212 | WP_159597424.1 | plasmid encoded RepA protein | - |
| F9Z45_RS22175 () | 1209..1688 | + | 480 | WP_159597425.1 | thermonuclease family protein | - |
| F9Z45_RS22180 () | 1698..1913 | + | 216 | WP_046534443.1 | hypothetical protein | - |
| F9Z45_RS22185 () | 2208..2729 | + | 522 | WP_159597426.1 | DNA repair protein RadC | - |
| F9Z45_RS22190 () | 3826..4053 | + | 228 | WP_159597460.1 | stable inheritance protein KleA | - |
| F9Z45_RS22195 () | 4114..4920 | + | 807 | WP_159597427.1 | DUF3560 domain-containing protein | - |
| F9Z45_RS22200 () | 5007..5189 | + | 183 | WP_159597428.1 | hypothetical protein | - |
| F9Z45_RS22205 () | 5193..5588 | + | 396 | WP_070697979.1 | hypothetical protein | - |
| F9Z45_RS22210 () | 5613..5906 | + | 294 | WP_159597429.1 | hypothetical protein | - |
| F9Z45_RS22215 () | 6013..6978 | + | 966 | WP_159597461.1 | hypothetical protein | - |
| F9Z45_RS22220 () | 7161..8147 | + | 987 | WP_159597430.1 | RepB family DNA primase | - |
| F9Z45_RS22225 () | 8881..9237 | + | 357 | WP_070697982.1 | single-stranded DNA-binding protein | - |
| F9Z45_RS22230 () | 9238..9627 | + | 390 | WP_081340476.1 | hypothetical protein | - |
| F9Z45_RS22235 () | 9634..10428 | + | 795 | WP_070697983.1 | ParA family protein | - |
| F9Z45_RS22240 () | 10428..11570 | + | 1143 | WP_159597431.1 | ParB/RepB/Spo0J family partition protein | - |
| F9Z45_RS22245 () | 11567..12109 | + | 543 | WP_159609098.1 | DUF192 domain-containing protein | - |
| F9Z45_RS22250 () | 12345..12944 | + | 600 | WP_070697986.1 | plasmid mobilization relaxosome protein MobC | - |
| F9Z45_RS22255 () | 12931..14016 | + | 1086 | WP_159597432.1 | relaxase/mobilization nuclease domain-containing protein | - |
| F9Z45_RS22260 () | 14231..15451 | + | 1221 | Protein_19 | Tn3-like element IS1071 family transposase | - |
| F9Z45_RS22265 () | 15631..17328 | + | 1698 | Protein_20 | Tn3-like element IS1071 family transposase | - |
| F9Z45_RS22270 () | 17504..17881 | + | 378 | WP_159609099.1 | transposase | - |
| F9Z45_RS22275 () | 17899..18405 | + | 507 | WP_068673276.1 | hypothetical protein | - |
| F9Z45_RS22280 () | 18451..18759 | - | 309 | WP_083944095.1 | LysR family transcriptional regulator | - |
| F9Z45_RS22285 () | 19211..19909 | - | 699 | WP_068673274.1 | dienelactone hydrolase family protein | - |
| F9Z45_RS22290 () | 19902..21080 | - | 1179 | WP_068673272.1 | muconate cycloisomerase family protein | - |
| F9Z45_RS22295 () | 21082..22161 | - | 1080 | WP_068673271.1 | maleylacetate reductase | - |
| F9Z45_RS22300 () | 22171..22506 | - | 336 | WP_068673269.1 | hypothetical protein | - |
| F9Z45_RS22305 () | 22520..23068 | - | 549 | WP_083944094.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| F9Z45_RS22310 () | 23127..24074 | - | 948 | WP_159597437.1 | tripartite tricarboxylate transporter substrate binding protein | - |
| F9Z45_RS22315 () | 24458..25204 | - | 747 | WP_068673263.1 | hypothetical protein | - |
| F9Z45_RS22320 () | 25707..26354 | + | 648 | WP_159597438.1 | LysR family transcriptional regulator | - |
| F9Z45_RS22325 () | 26473..29388 | + | 2916 | WP_003158660.1 | Tn3-like element IS1071 family transposase | - |
| F9Z45_RS22330 () | 29634..30260 | - | 627 | WP_068683781.1 | lytic transglycosylase domain-containing protein | - |
| F9Z45_RS22335 () | 30248..30886 | - | 639 | WP_083944708.1 | S26 family signal peptidase | - |
| F9Z45_RS22340 () | 30816..31046 | - | 231 | WP_083944709.1 | helix-turn-helix domain-containing protein | - |
| F9Z45_RS22345 () | 31233..31511 | - | 279 | WP_068683784.1 | hypothetical protein | - |
| F9Z45_RS22350 () | 31586..31819 | + | 234 | WP_068683789.1 | helix-turn-helix transcriptional regulator | - |
| F9Z45_RS22355 () | 31828..32337 | - | 510 | WP_068683790.1 | DUF2285 domain-containing protein | - |
| F9Z45_RS22360 () | 32584..33450 | - | 867 | WP_068683792.1 | phytanoyl-CoA dioxygenase family protein | - |
| F9Z45_RS22365 () | 33447..34052 | - | 606 | WP_068683794.1 | autoinducer synthase | - |
| F9Z45_RS22370 () | 34126..34911 | - | 786 | WP_083944710.1 | LuxR family transcriptional regulator | - |
| F9Z45_RS22375 () | 35068..36777 | - | 1710 | WP_159597442.1 | amidohydrolase | - |
| F9Z45_RS22380 () | 36809..37633 | - | 825 | WP_159597443.1 | hypothetical protein | - |
| F9Z45_RS22385 () | 37911..40259 | + | 2349 | WP_068685872.1 | indolepyruvate ferredoxin oxidoreductase subunit alpha | - |
| F9Z45_RS22390 () | 40336..41148 | + | 813 | Protein_45 | indolepyruvate oxidoreductase subunit beta family protein | - |
| F9Z45_RS22395 () | 41296..41613 | + | 318 | Protein_46 | DUF4158 domain-containing protein | - |
| F9Z45_RS22830 () | 41693..42034 | + | 342 | WP_014386446.1 | hypothetical protein | - |
| F9Z45_RS22400 () | 42031..42372 | + | 342 | WP_014386445.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| F9Z45_RS22405 () | 42464..44035 | + | 1572 | WP_051705518.1 | IS66 family transposase | - |
| F9Z45_RS22410 () | 44096..46708 | + | 2613 | Protein_50 | Tn3-like element IS1071 family transposase | - |
| F9Z45_RS22415 () | 46934..47110 | + | 177 | WP_157103529.1 | hypothetical protein | - |
| F9Z45_RS22420 () | 47110..47568 | + | 459 | WP_068685915.1 | hypothetical protein | - |
| F9Z45_RS22425 () | 48275..48484 | + | 210 | WP_102906381.1 | SWIB/MDM2 domain-containing protein | - |
| F9Z45_RS22430 () | 48561..49532 | - | 972 | WP_146039730.1 | IS3 family transposase | - |
| F9Z45_RS22435 () | 49863..51428 | + | 1566 | WP_063599743.1 | IS21-like element ISPpn1 family transposase | - |
| F9Z45_RS22440 () | 51418..52224 | + | 807 | WP_031652704.1 | IS21-like element helper ATPase IstB | - |
| F9Z45_RS22445 () | 52506..54044 | - | 1539 | WP_068685009.1 | IS3 family transposase | - |
| F9Z45_RS22450 () | 54373..55344 | + | 972 | WP_146039730.1 | IS3 family transposase | - |
| F9Z45_RS22455 () | 55389..55592 | + | 204 | Protein_59 | hypothetical protein | - |
| F9Z45_RS22460 () | 56391..58331 | - | 1941 | WP_068682758.1 | tyrosine-type recombinase/integrase | - |
| F9Z45_RS22465 () | 58341..58598 | - | 258 | WP_068682756.1 | hypothetical protein | - |
| F9Z45_RS22470 () | 59040..60605 | + | 1566 | WP_068682754.1 | IS21 family transposase | - |
| F9Z45_RS22475 () | 60602..61372 | + | 771 | WP_068682752.1 | IS21-like element helper ATPase IstB | - |
| F9Z45_RS22480 () | 61623..62708 | - | 1086 | WP_068682762.1 | ParB/RepB/Spo0J family partition protein | - |
| F9Z45_RS22485 () | 63493..64725 | - | 1233 | WP_068682750.1 | AAA family ATPase | - |
| F9Z45_RS22490 () | 65252..66622 | + | 1371 | WP_068682748.1 | replication initiation protein | - |
| F9Z45_RS22495 () | 67197..67604 | + | 408 | WP_102906383.1 | helix-turn-helix domain-containing protein | - |
| F9Z45_RS22500 () | 67604..68185 | + | 582 | WP_068682744.1 | PIN domain-containing protein | - |
| F9Z45_RS22505 () | 68766..71684 | + | 2919 | Protein_69 | Tn3-like element IS1071 family transposase | - |
| F9Z45_RS22510 () | 71827..72192 | - | 366 | Protein_70 | DNA-binding protein | - |
| F9Z45_RS22515 () | 72371..73420 | - | 1050 | WP_011114060.1 | ParB/RepB/Spo0J family partition protein | - |
| F9Z45_RS22520 () | 73417..74181 | - | 765 | WP_011114061.1 | ParA family protein | - |
| F9Z45_RS22525 () | 74178..74486 | - | 309 | WP_011114062.1 | KorA protein | - |
| F9Z45_RS22530 () | 74593..74922 | - | 330 | WP_011114064.1 | DUF2761 domain-containing protein | - |
| F9Z45_RS22535 () | 74924..75250 | - | 327 | WP_011114065.1 | hypothetical protein | - |
| F9Z45_RS22540 () | 75459..75695 | - | 237 | WP_011114066.1 | stable inheritance protein KleA | - |
| F9Z45_RS22545 () | 75853..76110 | - | 258 | WP_011114067.1 | hypothetical protein | - |
| F9Z45_RS22550 () | 76127..77335 | - | 1209 | WP_011114068.1 | hypothetical protein | - |
| F9Z45_RS22555 () | 77347..77610 | - | 264 | WP_011296181.1 | hypothetical protein | - |
| F9Z45_RS22560 () | 77610..78038 | - | 429 | WP_011114069.1 | antirestriction protein | - |
| F9Z45_RS22565 () | 78211..78474 | + | 264 | WP_011114070.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| F9Z45_RS22570 () | 78461..78742 | + | 282 | WP_011114071.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| F9Z45_RS22575 () | 79459..82374 | + | 2916 | WP_003158660.1 | Tn3-like element IS1071 family transposase | - |
| F9Z45_RS22580 () | 82491..82727 | - | 237 | WP_159597444.1 | hypothetical protein | - |
| F9Z45_RS22585 () | 82741..83397 | - | 657 | WP_159609100.1 | OmpA family protein | - |
| F9Z45_RS22590 () | 83793..84017 | - | 225 | WP_070697993.1 | hypothetical protein | - |
| F9Z45_RS22595 () | 84039..85436 | - | 1398 | WP_159609101.1 | hypothetical protein | - |
| F9Z45_RS22600 () | 85448..86167 | - | 720 | WP_159597447.1 | hypothetical protein | - |
| F9Z45_RS22605 () | 86278..88872 | - | 2595 | WP_159597448.1 | type IV secretory system conjugative DNA transfer family protein | - |
| F9Z45_RS22610 () | 89094..90164 | - | 1071 | WP_159597449.1 | P-type DNA transfer ATPase VirB11 | - |
| F9Z45_RS22615 () | 90142..91278 | - | 1137 | WP_046532890.1 | type IV secretion system protein VirB10 | - |
| F9Z45_RS22620 () | 91275..92153 | - | 879 | WP_046532891.1 | P-type conjugative transfer protein VirB9 | - |
| F9Z45_RS22625 () | 92150..92881 | - | 732 | WP_159597450.1 | virB8 family protein | - |
| F9Z45_RS22630 () | 92884..93048 | - | 165 | WP_141762690.1 | conjugal transfer protein TraI | - |
| F9Z45_RS22635 () | 93194..94279 | - | 1086 | WP_159597451.1 | type IV secretion system protein | - |
| F9Z45_RS22640 () | 94291..94599 | - | 309 | WP_070698001.1 | EexN family lipoprotein | - |
| F9Z45_RS22645 () | 94713..95432 | - | 720 | WP_159597452.1 | P-type DNA transfer protein VirB5 | - |
| F9Z45_RS22650 () | 95437..97971 | - | 2535 | WP_159597453.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| F9Z45_RS22655 () | 97981..98304 | - | 324 | WP_046534567.1 | VirB3 family type IV secretion system protein | - |
| F9Z45_RS22660 () | 98320..98625 | - | 306 | WP_070698005.1 | TrbC/VirB2 family protein | - |
| F9Z45_RS22665 () | 98791..101148 | - | 2358 | WP_159597454.1 | type I DNA topoisomerase | - |
| F9Z45_RS22670 () | 101160..101924 | - | 765 | WP_159597455.1 | lytic transglycosylase domain-containing protein | - |
| F9Z45_RS22675 () | 101976..102347 | - | 372 | WP_081340480.1 | hypothetical protein | - |
| F9Z45_RS22835 () | 103400..103732 | + | 333 | WP_197893625.1 | hypothetical protein | - |
| F9Z45_RS22685 () | 103761..103964 | + | 204 | WP_159597456.1 | hypothetical protein | - |
| F9Z45_RS22690 () | 103988..104395 | + | 408 | WP_159597457.1 | hypothetical protein | - |
| F9Z45_RS22695 () | 104453..104980 | + | 528 | WP_159597458.1 | hypothetical protein | - |
| F9Z45_RS22700 () | 105156..105380 | + | 225 | WP_046532841.1 | hypothetical protein | - |
| F9Z45_RS22705 () | 105391..105594 | + | 204 | WP_046532840.1 | hypothetical protein | - |
| F9Z45_RS22710 () | 105594..105947 | + | 354 | Protein_110 | hypothetical protein | - |
| F9Z45_RS22715 () | 106019..106156 | + | 138 | WP_158014636.1 | hypothetical protein | - |
| F9Z45_RS22720 () | 106175..106441 | + | 267 | WP_070697965.1 | hypothetical protein | - |
| F9Z45_RS22725 () | 106467..106727 | + | 261 | WP_070697966.1 | hypothetical protein | - |
| F9Z45_RS22730 () | 106745..106960 | + | 216 | WP_046532838.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|