MGE detailed information
MGE type: Conjugative plasmid MGE length: 104808 bp
Accession: NZ_CP044974 Location: 1..104808 Organism: Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B4) Replicon: plasmid pPBL-H3_B4-2
Accession: NZ_CP044974 Location: 1..104808 Organism: Hydrogenophaga sp. PBL-H3 substr. PBL-H3(B4) Replicon: plasmid pPBL-H3_B4-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F9Z44_RS22810 () | 1..1212 | + | 1212 | WP_159597424.1 | plasmid encoded RepA protein | - |
| F9Z44_RS22185 () | 1209..1688 | + | 480 | WP_159597425.1 | thermonuclease family protein | - |
| F9Z44_RS22190 () | 1698..1913 | + | 216 | WP_046534443.1 | hypothetical protein | - |
| F9Z44_RS22195 () | 2208..2729 | + | 522 | WP_159597426.1 | DNA repair protein RadC | - |
| F9Z44_RS22200 () | 3826..4053 | + | 228 | WP_159597460.1 | stable inheritance protein KleA | - |
| F9Z44_RS22205 () | 4114..4920 | + | 807 | WP_159597427.1 | DUF3560 domain-containing protein | - |
| F9Z44_RS22210 () | 5007..5189 | + | 183 | WP_159597428.1 | hypothetical protein | - |
| F9Z44_RS22215 () | 5193..5588 | + | 396 | WP_070697979.1 | hypothetical protein | - |
| F9Z44_RS22220 () | 5613..5906 | + | 294 | WP_159597429.1 | hypothetical protein | - |
| F9Z44_RS22225 () | 6013..6978 | + | 966 | WP_159597461.1 | hypothetical protein | - |
| F9Z44_RS22230 () | 7161..8147 | + | 987 | WP_159597430.1 | RepB family DNA primase | - |
| F9Z44_RS22235 () | 8881..9237 | + | 357 | WP_070697982.1 | single-stranded DNA-binding protein | - |
| F9Z44_RS22240 () | 9238..9627 | + | 390 | WP_081340476.1 | hypothetical protein | - |
| F9Z44_RS22245 () | 9634..10428 | + | 795 | WP_070697983.1 | ParA family protein | - |
| F9Z44_RS22250 () | 10428..11570 | + | 1143 | WP_159597431.1 | ParB/RepB/Spo0J family partition protein | - |
| F9Z44_RS22255 () | 11567..12109 | + | 543 | WP_159609098.1 | DUF192 domain-containing protein | - |
| F9Z44_RS22260 () | 12345..12944 | + | 600 | WP_070697986.1 | hypothetical protein | Relaxase |
| F9Z44_RS22265 () | 12931..14016 | + | 1086 | WP_159597432.1 | hypothetical protein | Relaxase |
| F9Z44_RS22270 () | 14231..15451 | + | 1221 | Protein_19 | Tn3 family transposase TnpA_IS1071 | Transposase |
| F9Z44_RS22275 () | 15631..17328 | + | 1698 | Protein_20 | Tn3 family transposase TnpA_IS1071 | Transposase |
| F9Z44_RS22280 () | 17504..17881 | + | 378 | WP_159609099.1 | IS66 family transposase ISAba17 | Transposase |
| F9Z44_RS22285 () | 17899..18405 | + | 507 | WP_068673276.1 | hypothetical protein | - |
| F9Z44_RS22290 () | 18451..18759 | - | 309 | WP_083944095.1 | LysR family transcriptional regulator | - |
| F9Z44_RS22295 () | 19211..19909 | - | 699 | WP_068673274.1 | dienelactone hydrolase family protein | - |
| F9Z44_RS22300 () | 19902..21080 | - | 1179 | WP_068673272.1 | muconate cycloisomerase family protein | - |
| F9Z44_RS22305 () | 21082..22161 | - | 1080 | WP_068673271.1 | maleylacetate reductase | - |
| F9Z44_RS22310 () | 22171..22506 | - | 336 | WP_068673269.1 | hypothetical protein | - |
| F9Z44_RS22315 () | 22520..23068 | - | 549 | WP_083944094.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| F9Z44_RS22320 () | 23127..24074 | - | 948 | WP_159597437.1 | tripartite tricarboxylate transporter substrate binding protein | - |
| F9Z44_RS22325 () | 24458..25204 | - | 747 | WP_068673263.1 | hypothetical protein | - |
| F9Z44_RS22330 () | 25707..26354 | + | 648 | WP_159597438.1 | HTH-type transcriptional regulator HdfR | VF |
| F9Z44_RS22335 () | 26473..29389 | + | 2917 | Protein_32 | Tn3 family transposase TnpA_IS1071 | Transposase |
| F9Z44_RS22340 () | 29675..30688 | - | 1014 | WP_032490114.1 | ferredoxin--NADP reductase | - |
| F9Z44_RS22345 () | 30700..31344 | - | 645 | WP_083944717.1 | aromatic-ring-hydroxylating dioxygenase subunit beta | - |
| F9Z44_RS22350 () | 31341..32690 | - | 1350 | WP_159597439.1 | Rieske 2Fe-2S domain-containing protein | - |
| F9Z44_RS22355 () | 32727..33479 | - | 753 | WP_162147771.1 | type 1 glutamine amidotransferase | - |
| F9Z44_RS22360 () | 33607..35085 | - | 1479 | WP_102905962.1 | glutamine synthetase family protein | - |
| F9Z44_RS22365 () | 35363..37711 | + | 2349 | WP_068685872.1 | indolepyruvate ferredoxin oxidoreductase subunit alpha | - |
| F9Z44_RS22370 () | 37788..38600 | + | 813 | Protein_39 | indolepyruvate oxidoreductase subunit beta family protein | - |
| F9Z44_RS22375 () | 38748..39065 | + | 318 | Protein_40 | DUF4158 domain-containing protein | - |
| F9Z44_RS22380 () | 39145..39486 | + | 342 | WP_014386446.1 | hypothetical protein | - |
| F9Z44_RS22385 () | 39483..39824 | + | 342 | WP_014386445.1 | IS66 family transposase ISThsp3 | Transposase |
| F9Z44_RS22390 () | 39916..41487 | + | 1572 | WP_051705518.1 | IS66 family transposase | - |
| F9Z44_RS22395 () | 41548..44160 | + | 2613 | Protein_44 | Tn3 family transposase TnpA_IS1071 | Transposase |
| F9Z44_RS22400 () | 44386..44562 | + | 177 | WP_157103529.1 | hypothetical protein | - |
| F9Z44_RS22405 () | 44562..45020 | + | 459 | WP_068685915.1 | hypothetical protein | - |
| F9Z44_RS22410 () | 45727..45936 | + | 210 | WP_102906381.1 | SWIB/MDM2 domain-containing protein | - |
| F9Z44_RS22415 () | 46013..46984 | - | 972 | WP_146039730.1 | IS3 family transposase ISMco1 | Transposase |
| F9Z44_RS22420 () | 47315..48880 | + | 1566 | WP_063599743.1 | IS21 family transposase ISPpn1 | Transposase |
| F9Z44_RS22425 () | 48870..49676 | + | 807 | WP_031652704.1 | IS21 family transposase ISPa64 | Transposase |
| F9Z44_RS22430 () | 49958..51496 | - | 1539 | WP_068685009.1 | IS3 family transposase ISBmu11 | Transposase |
| F9Z44_RS22435 () | 51825..52796 | + | 972 | WP_146039730.1 | IS3 family transposase ISMco1 | Transposase |
| F9Z44_RS22440 () | 52841..53044 | + | 204 | Protein_53 | hypothetical protein | - |
| F9Z44_RS22445 () | 53843..55783 | - | 1941 | WP_068682758.1 | tyrosine-type recombinase/integrase | - |
| F9Z44_RS22450 () | 55793..56050 | - | 258 | WP_068682756.1 | hypothetical protein | - |
| F9Z44_RS22455 () | 56492..58057 | + | 1566 | WP_068682754.1 | IS21 family transposase IS1631 | Transposase |
| F9Z44_RS22460 () | 58054..58824 | + | 771 | WP_068682752.1 | IS21 family transposase IS1631 | Transposase |
| F9Z44_RS22465 () | 59075..60160 | - | 1086 | WP_068682762.1 | ParB/RepB/Spo0J family partition protein | - |
| F9Z44_RS22470 () | 60945..62177 | - | 1233 | WP_068682750.1 | Iron-sulfur cluster carrier protein | VF |
| F9Z44_RS22475 () | 62704..64074 | + | 1371 | WP_068682748.1 | replication initiation protein | - |
| F9Z44_RS22480 () | 64649..65056 | + | 408 | WP_102906383.1 | helix-turn-helix domain-containing protein | - |
| F9Z44_RS22485 () | 65056..65637 | + | 582 | WP_068682744.1 | PIN domain-containing protein | - |
| F9Z44_RS22490 () | 66218..69134 | + | 2917 | Protein_63 | Tn3 family transposase TnpA_IS1071 | Transposase |
| F9Z44_RS22495 () | 69277..69642 | - | 366 | Protein_64 | DNA-binding protein | - |
| F9Z44_RS22500 () | 69821..70870 | - | 1050 | WP_011114060.1 | ParB/RepB/Spo0J family partition protein | - |
| F9Z44_RS22505 () | 70867..71631 | - | 765 | WP_011114061.1 | ParA family protein | - |
| F9Z44_RS22510 () | 71628..71936 | - | 309 | WP_011114062.1 | KorA protein | - |
| F9Z44_RS22515 () | 72043..72372 | - | 330 | WP_011114064.1 | DUF2761 domain-containing protein | - |
| F9Z44_RS22520 () | 72374..72700 | - | 327 | WP_011114065.1 | hypothetical protein | - |
| F9Z44_RS22525 () | 72909..73145 | - | 237 | WP_011114066.1 | stable inheritance protein KleA | - |
| F9Z44_RS22530 () | 73303..73560 | - | 258 | WP_011114067.1 | hypothetical protein | - |
| F9Z44_RS22535 () | 73577..74785 | - | 1209 | WP_011114068.1 | hypothetical protein | - |
| F9Z44_RS22540 () | 74797..75060 | - | 264 | WP_011296181.1 | hypothetical protein | - |
| F9Z44_RS22545 () | 75060..75488 | - | 429 | WP_011114069.1 | antirestriction protein | - |
| F9Z44_RS22550 () | 75661..75924 | + | 264 | WP_011114070.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| F9Z44_RS22555 () | 75911..76192 | + | 282 | WP_011114071.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| F9Z44_RS22560 () | 76908..79823 | + | 2916 | WP_003158660.1 | Tn3 family transposase TnpA_IS1071 | Transposase |
| F9Z44_RS22565 () | 79940..80176 | - | 237 | WP_159597444.1 | hypothetical protein | - |
| F9Z44_RS22570 () | 80190..80846 | - | 657 | WP_159609100.1 | hypothetical protein | VF |
| F9Z44_RS22575 () | 81242..81466 | - | 225 | WP_070697993.1 | hypothetical protein | - |
| F9Z44_RS22580 () | 81488..82885 | - | 1398 | WP_159609101.1 | hypothetical protein | - |
| F9Z44_RS22585 () | 82897..83616 | - | 720 | WP_159597447.1 | hypothetical protein | - |
| F9Z44_RS22590 () | 83727..86321 | - | 2595 | WP_159597448.1 | hypothetical protein | VF |
| F9Z44_RS22595 () | 86543..87613 | - | 1071 | WP_159597449.1 | hypothetical protein | VF |
| F9Z44_RS22600 () | 87591..88727 | - | 1137 | WP_046532890.1 | hypothetical protein | VF |
| F9Z44_RS22605 () | 88724..89602 | - | 879 | WP_046532891.1 | hypothetical protein | VF |
| F9Z44_RS22610 () | 89599..90330 | - | 732 | WP_159597450.1 | hypothetical protein | VF |
| F9Z44_RS22615 () | 90333..90497 | - | 165 | WP_141762690.1 | conjugal transfer protein TraI | - |
| F9Z44_RS22620 () | 90643..91728 | - | 1086 | WP_159597451.1 | hypothetical protein | VF |
| F9Z44_RS22625 () | 91740..92048 | - | 309 | WP_070698001.1 | EexN family lipoprotein | - |
| F9Z44_RS22630 () | 92162..92881 | - | 720 | WP_159597452.1 | hypothetical protein | VF |
| F9Z44_RS22635 () | 92886..95420 | - | 2535 | WP_159597453.1 | hypothetical protein | VF |
| F9Z44_RS22640 () | 95430..95753 | - | 324 | WP_046534567.1 | hypothetical protein | VF |
| F9Z44_RS22645 () | 95769..96074 | - | 306 | WP_070698005.1 | hypothetical protein | VF |
| F9Z44_RS22650 () | 96240..98597 | - | 2358 | WP_159597454.1 | type I DNA topoisomerase | - |
| F9Z44_RS22655 () | 98609..99373 | - | 765 | WP_159597455.1 | hypothetical protein | VF |
| F9Z44_RS22660 () | 99425..99796 | - | 372 | WP_081340480.1 | hypothetical protein | - |
| F9Z44_RS22815 () | 100849..101181 | + | 333 | WP_197893625.1 | hypothetical protein | - |
| F9Z44_RS22670 () | 101210..101413 | + | 204 | WP_159597456.1 | hypothetical protein | - |
| F9Z44_RS22675 () | 101437..101844 | + | 408 | WP_159597457.1 | hypothetical protein | - |
| F9Z44_RS22680 () | 101902..102429 | + | 528 | WP_159597458.1 | hypothetical protein | - |
| F9Z44_RS22685 () | 102605..102829 | + | 225 | WP_046532841.1 | hypothetical protein | - |
| F9Z44_RS22690 () | 102840..103043 | + | 204 | WP_046532840.1 | hypothetical protein | - |
| F9Z44_RS22695 () | 103043..103396 | + | 354 | Protein_104 | hypothetical protein | - |
| F9Z44_RS22700 () | 103468..103605 | + | 138 | WP_158014636.1 | hypothetical protein | - |
| F9Z44_RS22705 () | 103624..103890 | + | 267 | WP_070697965.1 | hypothetical protein | - |
| F9Z44_RS22710 () | 103916..104176 | + | 261 | WP_070697966.1 | hypothetical protein | - |
| F9Z44_RS22715 () | 104194..104409 | + | 216 | WP_046532838.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|