MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 109150 bp
Accession: NZ_CP044236 Location: 539207..648356 Organism: Lacticaseibacillus paracasei strain WX322 Replicon: chromosome
Accession: NZ_CP044236 Location: 539207..648356 Organism: Lacticaseibacillus paracasei strain WX322 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F0M22_RS02510 | 535169..536068 | + | 900 | WP_003577889.1 | shikimate dehydrogenase | - |
| F0M22_RS02515 | 536513..537328 | + | 816 | WP_242755667.1 | homoserine O-succinyltransferase | - |
| F0M22_RS02520 | 537362..538291 | + | 930 | WP_003577893.1 | cysteine synthase A | - |
| F0M22_RS02525 | 538481..539026 | - | 546 | WP_003577895.1 | hypothetical protein | - |
| F0M22_RS02535 | 539347..540516 | - | 1170 | WP_003577897.1 | IS91 family transposase ISCARN110 | Transposase |
| F0M22_RS02540 | 540629..540889 | - | 261 | WP_003573997.1 | hypothetical protein | - |
| F0M22_RS02545 | 540979..541599 | + | 621 | WP_016368286.1 | hypothetical protein | - |
| F0M22_RS02550 | 541583..541819 | - | 237 | WP_003572177.1 | hypothetical protein | - |
| F0M22_RS02555 | 542012..542719 | - | 708 | WP_003572180.1 | zinc ribbon domain-containing protein | - |
| F0M22_RS02560 | 542916..543836 | + | 921 | WP_173959188.1 | IS30 family transposase ISLpl1 | Transposase |
| F0M22_RS02565 | 543933..544355 | - | 423 | WP_003572182.1 | ImmA/IrrE family metallo-endopeptidase | - |
| F0M22_RS02570 | 544348..544701 | - | 354 | WP_003572184.1 | helix-turn-helix transcriptional regulator | - |
| F0M22_RS02575 | 544945..545193 | + | 249 | WP_003574003.1 | hypothetical protein | - |
| F0M22_RS02580 | 545235..545435 | + | 201 | WP_242755668.1 | hypothetical protein | - |
| F0M22_RS02585 | 545406..546239 | - | 834 | WP_003572188.1 | TIGR02391 family protein | - |
| F0M22_RS02590 | 546300..547058 | + | 759 | WP_016368112.1 | ORF6C domain-containing protein | - |
| F0M22_RS02595 | 547059..547238 | + | 180 | Protein_516 | hypothetical protein | - |
| F0M22_RS02600 | 547231..547482 | - | 252 | WP_003572196.1 | DUF1883 domain-containing protein | - |
| F0M22_RS02605 | 547548..547904 | + | 357 | WP_003572199.1 | DUF771 domain-containing protein | - |
| F0M22_RS02610 | 547989..548192 | + | 204 | WP_003572201.1 | hypothetical protein | - |
| F0M22_RS02615 | 548175..548720 | - | 546 | WP_003586921.1 | hypothetical protein | - |
| F0M22_RS02620 | 548901..549215 | + | 315 | WP_003661649.1 | hypothetical protein | - |
| F0M22_RS02625 | 549208..549954 | + | 747 | WP_003589923.1 | DnaD domain protein | - |
| F0M22_RS02630 | 549969..550793 | + | 825 | WP_003589925.1 | ATP-binding protein | - |
| F0M22_RS02635 | 550793..551311 | + | 519 | WP_003574016.1 | 3'-5' exonuclease | - |
| F0M22_RS02640 | 551358..551780 | + | 423 | WP_003597560.1 | hypothetical protein | - |
| F0M22_RS02645 | 551782..552519 | + | 738 | WP_016368116.1 | hypothetical protein | - |
| F0M22_RS02650 | 552531..552818 | + | 288 | WP_010493149.1 | hypothetical protein | - |
| F0M22_RS02655 | 553014..553934 | + | 921 | WP_003574021.1 | IS30 family transposase ISLpl1 | Transposase |
| F0M22_RS02660 | 553943..554275 | + | 333 | WP_032786488.1 | hypothetical protein | - |
| F0M22_RS02665 | 554790..555233 | + | 444 | WP_010493154.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| F0M22_RS02670 | 555747..556121 | + | 375 | Protein_531 | hypothetical protein | - |
| F0M22_RS02675 | 556141..557061 | - | 921 | WP_003574021.1 | IS30 family transposase ISLpl1 | Transposase |
| F0M22_RS02680 | 557171..557455 | + | 285 | Protein_533 | hypothetical protein | - |
| F0M22_RS02685 | 557706..558704 | + | 999 | WP_003583407.1 | IS30 family transposase ISApl1 | Transposase |
| F0M22_RS02690 | 558900..559118 | - | 219 | WP_003573729.1 | CsbD family protein | - |
| F0M22_RS02695 | 559541..560371 | + | 831 | WP_016369610.1 | GcrA family cell cycle regulator | - |
| F0M22_RS02700 | 560461..560664 | + | 204 | WP_016363325.1 | hypothetical protein | - |
| F0M22_RS02705 | 560651..560986 | + | 336 | WP_010493173.1 | ribonucleoside-diphosphate reductase | - |
| F0M22_RS02710 | 561127..561438 | + | 312 | WP_003582149.1 | IS3 family transposase IS1163 | Transposase |
| F0M22_RS02715 | 561468..562196 | + | 729 | WP_242755669.1 | IS3 family transposase ISSth1b | Transposase |
| F0M22_RS02720 | 562193..563071 | + | 879 | WP_242755670.1 | IS3 family transposase ISSth1b | Transposase |
| F0M22_RS02725 | 563150..563980 | + | 831 | WP_003583410.1 | IS3 family transposase IS1520 | Transposase |
| F0M22_RS02730 | 564662..564940 | + | 279 | WP_218210348.1 | hypothetical protein | - |
| F0M22_RS02735 | 564952..565218 | + | 267 | WP_242755671.1 | hypothetical protein | - |
| F0M22_RS02740 | 565237..565413 | + | 177 | WP_242755672.1 | hypothetical protein | - |
| F0M22_RS02745 | 565415..565642 | + | 228 | WP_003572360.1 | hypothetical protein | - |
| F0M22_RS02750 | 565685..566926 | + | 1242 | WP_242755673.1 | hypothetical protein | - |
| F0M22_RS02755 | 566904..568463 | + | 1560 | WP_242755674.1 | DUF5011 domain-containing protein | - |
| F0M22_RS02760 | 568473..568892 | + | 420 | WP_049172384.1 | single-stranded DNA-binding protein | - |
| F0M22_RS02765 | 568901..569479 | + | 579 | WP_242755675.1 | hypothetical protein | - |
| F0M22_RS02770 | 569506..571962 | + | 2457 | WP_242755676.1 | type IV secretory system conjugative DNA transfer family protein | - |
| F0M22_RS02775 | 571959..573956 | + | 1998 | WP_242755677.1 | hypothetical protein | - |
| F0M22_RS02780 | 573962..574297 | + | 336 | WP_242755678.1 | hypothetical protein | - |
| F0M22_RS02785 | 574281..574877 | + | 597 | WP_049172375.1 | hypothetical protein | - |
| F0M22_RS02790 | 574858..576786 | + | 1929 | WP_242755679.1 | ATP-binding protein | - |
| F0M22_RS02795 | 576788..577798 | + | 1011 | WP_242755681.1 | hypothetical protein | VF |
| F0M22_RS02800 | 577814..578458 | + | 645 | WP_242755683.1 | hypothetical protein | - |
| F0M22_RS02805 | 578455..578862 | + | 408 | WP_242755698.1 | thioredoxin family protein | - |
| F0M22_RS02810 | 578852..579673 | + | 822 | WP_242755700.1 | tektin family protein | - |
| F0M22_RS02815 | 580267..580467 | + | 201 | WP_242755702.1 | plasmid replication protein | - |
| F0M22_RS02820 | 580464..580721 | + | 258 | WP_242755710.1 | hypothetical protein | - |
| F0M22_RS02825 | 580760..581197 | + | 438 | WP_016368253.1 | hypothetical protein | - |
| F0M22_RS02830 | 581190..582434 | + | 1245 | WP_242755712.1 | MobP2 family relaxase | - |
| F0M22_RS02835 | 582476..582721 | + | 246 | WP_242755714.1 | hypothetical protein | - |
| F0M22_RS02840 | 582708..585245 | + | 2538 | WP_242755716.1 | ArdC-like ssDNA-binding domain-containing protein | - |
| F0M22_RS02845 | 585586..585690 | + | 105 | WP_011674169.1 | putative holin-like toxin | - |
| F0M22_RS02850 | 585941..587371 | - | 1431 | WP_003582065.1 | ISLre2 family transposase ISLrh4 | Transposase |
| F0M22_RS02855 | 587493..587882 | - | 390 | WP_242755718.1 | hypothetical protein | - |
| F0M22_RS02860 | 587885..588028 | - | 144 | WP_003582061.1 | hypothetical protein | - |
| F0M22_RS02865 | 588021..588470 | - | 450 | WP_242755720.1 | nitroreductase | - |
| F0M22_RS02870 | 588484..588774 | - | 291 | WP_003582058.1 | hypothetical protein | - |
| F0M22_RS02875 | 588784..589230 | - | 447 | WP_016370919.1 | hypothetical protein | - |
| F0M22_RS02880 | 589734..590615 | + | 882 | WP_242755722.1 | hypothetical protein | VF |
| F0M22_RS02885 | 590632..590991 | + | 360 | WP_016370874.1 | hypothetical protein | - |
| F0M22_RS02890 | 591070..591741 | + | 672 | WP_012491080.1 | class A sortase | - |
| F0M22_RS02895 | 591876..592106 | + | 231 | WP_012491081.1 | hypothetical protein | - |
| F0M22_RS02900 | 592527..594083 | + | 1557 | WP_041168760.1 | ClC family H(+)/Cl(-) exchange transporter | - |
| F0M22_RS02910 | 595720..596067 | - | 348 | WP_242755726.1 | replication initiation protein | - |
| F0M22_RS02915 | 596103..596384 | - | 282 | WP_242755728.1 | hypothetical protein | - |
| F0M22_RS02920 | 596444..599248 | - | 2805 | WP_003582044.1 | cation-transporting P-type ATPase | - |
| F0M22_RS02925 | 599631..600017 | + | 387 | Protein_582 | IS5 family transposase ISCaa8 | Transposase |
| F0M22_RS02930 | 600232..600792 | + | 561 | WP_242755730.1 | TetR/AcrR family transcriptional regulator | - |
| F0M22_RS02935 | 600917..601993 | + | 1077 | WP_003568823.1 | dihydrodipicolinate reductase | - |
| F0M22_RS02940 | 602280..603200 | - | 921 | WP_003574021.1 | IS30 family transposase ISLpl1 | Transposase |
| F0M22_RS02945 | 603429..604955 | + | 1527 | WP_242755732.1 | class I SAM-dependent DNA methyltransferase | - |
| F0M22_RS02950 | 604945..606147 | + | 1203 | WP_242755734.1 | restriction endonuclease subunit S | - |
| F0M22_RS02955 | 606140..609283 | + | 3144 | WP_242755736.1 | type I restriction endonuclease subunit R | - |
| F0M22_RS02960 | 609377..610072 | + | 696 | WP_242755738.1 | hypothetical protein | - |
| F0M22_RS02965 | 610069..610839 | - | 771 | WP_242755740.1 | hypothetical protein | - |
| F0M22_RS02970 | 611799..612080 | - | 282 | WP_003573774.1 | type II toxin-antitoxin system YafQ family toxin | Toxin Detail |
| F0M22_RS02975 | 612073..612315 | - | 243 | WP_016363783.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| F0M22_RS02980 | 612442..612810 | - | 369 | WP_242755742.1 | YxeA family protein | - |
| F0M22_RS02985 | 613015..613383 | - | 369 | WP_242755742.1 | YxeA family protein | - |
| F0M22_RS02990 | 613678..614028 | - | 351 | WP_016387184.1 | hypothetical protein | - |
| F0M22_RS02995 | 614276..615520 | + | 1245 | WP_242755749.1 | ISL3 family transposase IS1165 | Transposase |
| F0M22_RS03000 | 615662..615751 | + | 90 | Protein_597 | IS30 family transposase | - |
| F0M22_RS03005 | 615793..616260 | - | 468 | WP_003582565.1 | DNA starvation/stationary phase protection protein | - |
| F0M22_RS03010 | 616503..616754 | + | 252 | WP_002816285.1 | IS3 family transposase IS153 | Transposase |
| F0M22_RS03015 | 616772..617650 | + | 879 | WP_278186090.1 | IS3 family transposase ISBce13 | Transposase |
| F0M22_RS03020 | 617962..618879 | + | 918 | WP_242755765.1 | FAD:protein FMN transferase | - |
| F0M22_RS03025 | 619026..619634 | + | 609 | WP_003582352.1 | NAD(P)H-dependent oxidoreductase | - |
| F0M22_RS03030 | 619645..620913 | + | 1269 | WP_242755767.1 | NADPH-dependent oxidoreductase | - |
| F0M22_RS03035 | 621182..621610 | + | 429 | WP_003582348.1 | hypothetical protein | - |
| F0M22_RS03040 | 621738..621914 | + | 177 | WP_003582346.1 | hypothetical protein | - |
| F0M22_RS03045 | 622043..622513 | - | 471 | WP_242755769.1 | IS30 family transposase | - |
| F0M22_RS03050 | 622422..622634 | - | 213 | WP_003582342.1 | IS30 family transposase ISPfr16 | Transposase |
| F0M22_RS03055 | 622784..623467 | - | 684 | WP_022669498.1 | IS6 family transposase ISBth20 | Transposase |
| F0M22_RS03060 | 623529..623642 | - | 114 | Protein_609 | IS30 family transposase | - |
| F0M22_RS03065 | 623781..624311 | + | 531 | Protein_610 | ISL3 family transposase IS1165 | Transposase |
| F0M22_RS03070 | 624438..624854 | - | 417 | WP_004563097.1 | arsenate reductase (thioredoxin) | - |
| F0M22_RS03075 | 624877..625212 | - | 336 | WP_003582108.1 | arsenite efflux transporter metallochaperone ArsD | - |
| F0M22_RS03080 | 625249..626544 | - | 1296 | WP_003582109.1 | arsenic transporter | - |
| F0M22_RS03085 | 626587..628317 | - | 1731 | WP_016368213.1 | arsenical pump-driving ATPase | - |
| F0M22_RS03090 | 628369..628692 | - | 324 | WP_003582114.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| F0M22_RS03095 | 628815..629411 | - | 597 | WP_003582117.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| F0M22_RS03100 | 629590..629853 | + | 264 | WP_003582120.1 | Tn3 family transposase TnBth1 | Transposase |
| F0M22_RS03110 | 630660..630935 | + | 276 | WP_003582793.1 | DUF4158 domain-containing protein | - |
| F0M22_RS03115 | 630974..631761 | + | 788 | WP_080487858.1 | IS5 family transposase | - |
| F0M22_RS03120 | 631876..632133 | - | 258 | Protein_621 | IS5 family transposase ISLca2 | Transposase |
| F0M22_RS03125 | 632459..633202 | + | 744 | WP_003581836.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| F0M22_RS03130 | 633180..634427 | + | 1248 | WP_016366710.1 | ABC transporter permease | - |
| F0M22_RS03135 | 634432..635103 | + | 672 | WP_003581839.1 | TetR/AcrR family transcriptional regulator | - |
| F0M22_RS03140 | 635195..635878 | + | 684 | WP_022669498.1 | IS6 family transposase ISBth20 | Transposase |
| F0M22_RS03145 | 636270..636533 | + | 264 | WP_003581966.1 | adenine-specific methyltransferase EcoRI family protein | - |
| F0M22_RS03150 | 636494..637144 | + | 651 | WP_016368446.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| F0M22_RS03155 | 637141..637911 | + | 771 | WP_003581971.1 | iron export ABC transporter permease subunit FetB | - |
| F0M22_RS03160 | 638019..639341 | - | 1323 | WP_003581973.1 | glycoside-pentoside-hexuronide (GPH):cation symporter | - |
| F0M22_RS03165 | 639540..640424 | - | 885 | Protein_630 | IS30 family transposase ISLpl1 | Transposase |
| F0M22_RS03170 | 640535..640942 | + | 408 | Protein_631 | IS6 family transposase ISBth20 | Transposase |
| F0M22_RS03175 | 641000..641119 | + | 120 | Protein_632 | restriction endonuclease subunit S | - |
| F0M22_RS03180 | 641704..642488 | + | 785 | WP_101511947.1 | IS5 family transposase ISCaa8 | Transposase |
| F0M22_RS03185 | 642763..644295 | + | 1533 | WP_003585701.1 | ABC transporter permease/substrate-binding protein | - |
| F0M22_RS03190 | 644295..645254 | + | 960 | WP_003567800.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| F0M22_RS03195 | 645260..646585 | + | 1326 | WP_060417290.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| F0M22_RS03200 | 646636..647556 | - | 921 | WP_003574021.1 | IS30 family transposase ISLpl1 | Transposase |
| F0M22_RS03205 | 648402..649190 | + | 789 | WP_003587240.1 | hypothetical protein | - |
| F0M22_RS03210 | 649276..650412 | - | 1137 | WP_003590076.1 | PLP-dependent transferase | - |
| F0M22_RS03215 | 650514..651326 | - | 813 | WP_003587242.1 | transporter substrate-binding domain-containing protein | - |
| F0M22_RS03220 | 651358..652071 | - | 714 | WP_003573812.1 | amino acid ABC transporter permease | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|