MGE detailed information
MGE type: Prophage MGE length: 40443 bp
Accession: NZ_CP044158 Location: 2333549..2373991 Organism: Shigella flexneri strain AR-0423 Replicon: chromosome
Accession: NZ_CP044158 Location: 2333549..2373991 Organism: Shigella flexneri strain AR-0423 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F4V35_RS12215 () | 2328973..2330667 | - | 1695 | Protein_2360 | cellulose biosynthesis regulator diguanylate cyclase DgcQ | - |
| F4V35_RS12220 () | 2330838..2331020 | - | 183 | WP_000009302.1 | DUF2158 domain-containing protein | - |
| F4V35_RS12225 () | 2331099..2332016 | - | 918 | WP_000922688.1 | DUF808 domain-containing protein | - |
| F4V35_RS12230 () | 2332189..2333109 | + | 921 | WP_001212270.1 | drug/metabolite exporter YedA | - |
| F4V35_RS12235 () | 2333098..2333568 | - | 471 | WP_000228688.1 | VSPR family DNA mismatch endonuclease | - |
| F4V35_RS12240 () | 2333549..2334967 | - | 1419 | WP_001157215.1 | DNA-cytosine methyltransferase | - |
| F4V35_RS12245 () | 2335034..2335535 | - | 502 | Protein_2366 | HD domain-containing protein | - |
| F4V35_RS12250 () | 2335614..2335871 | - | 258 | WP_032155863.1 | cell division protein DrpB | - |
| F4V35_RS12260 () | 2337136..2337846 | + | 711 | Protein_2369 | porin | - |
| F4V35_RS12270 () | 2339189..2339359 | + | 171 | Protein_2371 | porin | - |
| F4V35_RS12275 () | 2339987..2340684 | + | 698 | WP_223368647.1 | IS1 family transposase | - |
| F4V35_RS12280 () | 2340730..2341581 | + | 852 | WP_000218218.1 | protein deglycase HchA | - |
| F4V35_RS12285 () | 2341689..2343047 | - | 1359 | WP_000826714.1 | two-component system sensor histidine kinase HprS | - |
| F4V35_RS12290 () | 2343047..2343718 | - | 672 | WP_001347103.1 | response regulator transcription factor HprR | - |
| F4V35_RS12295 () | 2343851..2344264 | + | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| F4V35_RS12300 () | 2344373..2345377 | + | 1005 | Protein_2377 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| F4V35_RS12305 () | 2345378..2346013 | + | 636 | WP_001240061.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| F4V35_RS12310 () | 2346271..2346921 | + | 651 | WP_001007781.1 | metal-binding protein ZinT | - |
| F4V35_RS12320 () | 2347999..2348268 | - | 270 | WP_000937511.1 | tail fiber assembly protein | - |
| F4V35_RS12325 () | 2348325..2348993 | + | 669 | WP_000239881.1 | class I SAM-dependent methyltransferase | - |
| F4V35_RS12330 () | 2349309..2350952 | + | 1644 | WP_014532281.1 | T3SS effector E3 ubiquitin-protein ligase IpaH4/H7 | - |
| F4V35_RS12340 () | 2351132..2351611 | - | 480 | Protein_2383 | DUF4376 domain-containing protein | - |
| F4V35_RS12345 () | 2351652..2352509 | - | 858 | Protein_2384 | IS3 family transposase | - |
| F4V35_RS12350 () | 2352567..2353264 | + | 698 | WP_223368647.1 | IS1 family transposase | - |
| F4V35_RS12355 () | 2353357..2353839 | - | 483 | WP_000594909.1 | hypothetical protein | - |
| F4V35_RS12360 () | 2353907..2355856 | - | 1950 | WP_000785377.1 | phage tail tape measure protein | - |
| F4V35_RS12365 () | 2355941..2356276 | - | 336 | WP_001251340.1 | phage tail assembly protein | - |
| F4V35_RS12370 () | 2356276..2356632 | - | 357 | WP_001062338.1 | phage tail tube protein | - |
| F4V35_RS12375 () | 2356632..2358128 | - | 1497 | WP_000155743.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| F4V35_RS12380 () | 2358125..2358286 | - | 162 | WP_000497744.1 | DUF2635 domain-containing protein | - |
| F4V35_RS12385 () | 2358296..2358655 | - | 360 | Protein_2392 | hypothetical protein | - |
| F4V35_RS12395 () | 2359902..2360225 | - | 324 | Protein_2394 | transposase | - |
| F4V35_RS12405 () | 2360994..2361491 | - | 498 | Protein_2396 | IS66 family transposase zinc-finger binding domain-containing protein | - |
| F4V35_RS12410 () | 2361488..2361838 | - | 351 | WP_005049241.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| F4V35_RS12415 () | 2361835..2362509 | - | 675 | WP_004967157.1 | IS66-like element accessory protein TnpA | - |
| F4V35_RS12420 () | 2362608..2362823 | - | 216 | WP_000839572.1 | class II holin family protein | - |
| F4V35_RS12450 () | 2363619..2364307 | - | 689 | Protein_2400 | bacteriophage antitermination protein Q | - |
| F4V35_RS12455 () | 2364304..2364669 | - | 366 | WP_000140020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| F4V35_RS12460 () | 2364670..2365728 | - | 1059 | WP_001265248.1 | DUF968 domain-containing protein | - |
| F4V35_RS12465 () | 2365730..2366008 | - | 279 | WP_011069426.1 | hypothetical protein | - |
| F4V35_RS12475 () | 2366176..2366331 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 2366343..2366401 | + | 59 | - | - | Antitoxin Detail |
| F4V35_RS12490 () | 2366983..2367399 | - | 417 | WP_005069274.1 | hypothetical protein | - |
| F4V35_RS12495 () | 2367426..2367566 | + | 141 | Protein_2406 | DUF4224 domain-containing protein | - |
| F4V35_RS12500 () | 2367566..2368616 | + | 1051 | Protein_2407 | tyrosine-type recombinase/integrase | - |
| F4V35_RS12510 () | 2368827..2369624 | + | 798 | WP_001325918.1 | DgsA anti-repressor MtfA | - |
| F4V35_RS12520 () | 2369962..2371224 | + | 1263 | Protein_2409 | tyrosine-type recombinase/integrase | - |
| F4V35_RS12530 () | 2372585..2373784 | + | 1200 | Protein_2411 | IS3 family transposase | - |
| F4V35_RS12535 () | 2373785..2373991 | + | 207 | WP_000466572.1 | hypothetical protein | - |
| F4V35_RS12540 () | 2374093..2375547 | + | 1455 | WP_001060217.1 | AMP nucleosidase | - |
| F4V35_RS12545 () | 2375890..2376606 | + | 717 | WP_000532920.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| F4V35_RS12555 () | 2377238..2378865 | - | 1628 | Protein_2415 | toxic metabolite efflux MATE transporter YeeO | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|