MGE detailed information
MGE type: Prophage MGE length: 61853 bp
Accession: NZ_CP044158 Location: 1682698..1744550 Organism: Shigella flexneri strain AR-0423 Replicon: chromosome
Accession: NZ_CP044158 Location: 1682698..1744550 Organism: Shigella flexneri strain AR-0423 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F4V35_RS08600 () | 1678602..1679240 | - | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
| F4V35_RS08605 () | 1679258..1679839 | - | 582 | Protein_1663 | alpha/beta hydrolase | - |
| F4V35_RS08610 () | 1680068..1681264 | + | 1197 | WP_005084161.1 | IS110-like element ISEc20 family transposase | - |
| F4V35_RS25230 () | 1681281..1681640 | - | 360 | Protein_1665 | alpha/beta hydrolase | - |
| F4V35_RS08620 () | 1681640..1682560 | - | 921 | WP_000981715.1 | alpha/beta hydrolase | - |
| F4V35_RS08625 () | 1682698..1683132 | + | 435 | Protein_1667 | DNA-binding transcriptional regulator PgrR | - |
| F4V35_RS08635 () | 1684437..1684847 | + | 411 | Protein_1669 | YdaU family protein | - |
| F4V35_RS25670 () | 1686613..1686782 | + | 170 | Protein_1671 | hypothetical protein | - |
| F4V35_RS08650 () | 1686928..1687674 | + | 747 | WP_000788996.1 | ATP-binding protein | - |
| F4V35_RS08655 () | 1687689..1688111 | + | 423 | WP_001118168.1 | DUF977 family protein | - |
| F4V35_RS08660 () | 1688169..1688525 | + | 357 | WP_005048249.1 | hypothetical protein | - |
| F4V35_RS08665 () | 1688618..1688835 | + | 218 | Protein_1675 | DUF4014 family protein | - |
| F4V35_RS08670 () | 1688837..1689202 | + | 366 | WP_001229297.1 | HNH endonuclease signature motif containing protein | - |
| F4V35_RS08675 () | 1689199..1689864 | + | 666 | WP_000208062.1 | hypothetical protein | - |
| F4V35_RS08680 () | 1689864..1690229 | + | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| - | 1690614..1690672 | - | 59 | - | - | Antitoxin Detail |
| F4V35_RS08685 () | 1690684..1690839 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| F4V35_RS08700 () | 1692176..1692775 | + | 600 | WP_000940329.1 | DUF1367 family protein | - |
| F4V35_RS08705 () | 1692775..1693065 | + | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| F4V35_RS08710 () | 1693062..1693615 | + | 554 | Protein_1683 | DUF1133 family protein | - |
| F4V35_RS08715 () | 1693768..1693941 | + | 174 | WP_000504450.1 | hypothetical protein | - |
| F4V35_RS08720 () | 1694003..1695142 | + | 1140 | WP_000088354.1 | IS3 family transposase | - |
| F4V35_RS08725 () | 1695213..1695695 | + | 483 | WP_000068107.1 | ORF6N domain-containing protein | - |
| F4V35_RS08755 () | 1696329..1697933 | + | 1605 | WP_000615491.1 | site-specific integrase | - |
| F4V35_RS08760 () | 1698755..1699923 | + | 1169 | WP_000747032.1 | IS3-like element IS911 family transposase | - |
| F4V35_RS08765 () | 1700301..1700453 | + | 153 | Protein_1689 | Rha family transcriptional regulator | - |
| F4V35_RS08770 () | 1700512..1701209 | + | 698 | WP_225620329.1 | IS1 family transposase | - |
| F4V35_RS08775 () | 1701225..1702130 | + | 906 | Protein_1691 | IS3 family transposase | - |
| F4V35_RS08780 () | 1702158..1702526 | + | 369 | WP_011069357.1 | hypothetical protein | - |
| F4V35_RS08790 () | 1702550..1703094 | + | 545 | Protein_1693 | tail fiber assembly protein | - |
| F4V35_RS08795 () | 1703118..1704386 | + | 1269 | WP_005098694.1 | prophage tail fiber N-terminal domain-containing protein | - |
| F4V35_RS08800 () | 1704337..1704960 | + | 624 | WP_000930141.1 | DUF4376 domain-containing protein | - |
| F4V35_RS08805 () | 1705161..1706018 | - | 858 | WP_000968134.1 | iron/manganese ABC transporter permease subunit SitD | - |
| F4V35_RS08810 () | 1706015..1706872 | - | 858 | WP_001101728.1 | iron/manganese ABC transporter permease subunit SitC | - |
| F4V35_RS08815 () | 1706869..1707696 | - | 828 | WP_000983722.1 | iron/manganese ABC transporter ATP-binding protein SitB | - |
| F4V35_RS08820 () | 1707696..1708610 | - | 915 | WP_000555620.1 | iron/manganese ABC transporter substrate-binding protein SitA | - |
| F4V35_RS08825 () | 1709042..1709683 | - | 642 | Protein_1700 | site-specific integrase | - |
| F4V35_RS08830 () | 1709737..1710434 | + | 698 | WP_223368647.1 | IS1 family transposase | - |
| F4V35_RS08835 () | 1710451..1710621 | - | 171 | Protein_1702 | DUF3596 domain-containing protein | - |
| F4V35_RS08840 () | 1710623..1710790 | - | 168 | WP_005049823.1 | excisionase family protein | - |
| F4V35_RS08845 () | 1710838..1712047 | - | 1210 | Protein_1704 | IS3 family transposase | - |
| F4V35_RS08850 () | 1712122..1713219 | - | 1098 | WP_001173294.1 | AAA family ATPase | - |
| F4V35_RS08855 () | 1713225..1713485 | - | 261 | WP_005135630.1 | host-nuclease inhibitor Gam family protein | - |
| F4V35_RS08860 () | 1713584..1714740 | + | 1157 | WP_151101426.1 | IS3-like element IS600 family transposase | - |
| F4V35_RS08865 () | 1714797..1716212 | - | 1416 | Protein_1708 | exodeoxyribonuclease VIII | - |
| F4V35_RS08870 () | 1716312..1716587 | - | 276 | WP_005049830.1 | hypothetical protein | - |
| F4V35_RS08875 () | 1716662..1716832 | - | 171 | WP_001359121.1 | YdaE family protein | - |
| F4V35_RS08880 () | 1716832..1717053 | - | 222 | WP_000560210.1 | cell division protein FtsZ | - |
| F4V35_RS08890 () | 1718400..1719288 | - | 889 | Protein_1713 | Rha family transcriptional regulator | - |
| F4V35_RS25240 () | 1720512..1720892 | + | 381 | Protein_1714 | IS66-like element accessory protein TnpA | - |
| F4V35_RS25245 () | 1720894..1721061 | + | 168 | Protein_1715 | phage tail protein | - |
| F4V35_RS08900 () | 1721012..1721635 | + | 624 | WP_000930142.1 | DUF4376 domain-containing protein | - |
| F4V35_RS25675 () | 1721641..1721745 | + | 105 | Protein_1717 | tail fiber assembly protein | - |
| F4V35_RS08910 () | 1721815..1723530 | - | 1716 | WP_128568580.1 | T3SS effector E3 ubiquitin-protein ligase IpaH3 | - |
| F4V35_RS08920 () | 1724072..1724769 | + | 698 | WP_223368647.1 | IS1 family transposase | - |
| F4V35_RS08925 () | 1725049..1725495 | + | 447 | Protein_1720 | metallophosphoesterase | - |
| F4V35_RS08930 () | 1725560..1726716 | + | 1157 | WP_094085510.1 | IS3-like element IS600 family transposase | - |
| F4V35_RS08935 () | 1726760..1726948 | + | 189 | Protein_1722 | serine/threonine-protein phosphatase | - |
| F4V35_RS08940 () | 1726973..1727164 | - | 192 | WP_005049838.1 | YebW family protein | - |
| F4V35_RS08945 () | 1727269..1727505 | - | 237 | WP_001295499.1 | YebV family protein | - |
| F4V35_RS08950 () | 1727623..1729062 | - | 1440 | Protein_1725 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| F4V35_RS08955 () | 1729142..1731762 | - | 2621 | Protein_1726 | lipid-binding membrane homeostasis protein YebT | - |
| F4V35_RS08960 () | 1731731..1733014 | - | 1284 | WP_001207280.1 | membrane integrity lipid transport subunit YebS | - |
| F4V35_RS08965 () | 1733144..1733641 | + | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| F4V35_RS08970 () | 1733738..1734436 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| F4V35_RS08975 () | 1734456..1736504 | + | 2049 | WP_001055799.1 | carboxy terminal-processing peptidase | - |
| F4V35_RS08980 () | 1736696..1737577 | + | 882 | WP_000984517.1 | protease HtpX | - |
| F4V35_RS08985 () | 1737623..1738996 | - | 1374 | WP_001127218.1 | MFS transporter | - |
| F4V35_RS08990 () | 1739173..1739964 | + | 792 | WP_001262181.1 | DNA-binding transcriptional regulator KdgR | - |
| F4V35_RS08995 () | 1740107..1740346 | - | 240 | WP_001211010.1 | YobH family protein | - |
| F4V35_RS09000 () | 1740505..1740648 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| F4V35_RS09005 () | 1740723..1741010 | + | 288 | WP_001006860.1 | YebO family protein | - |
| F4V35_RS09010 () | 1741681..1741824 | + | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| F4V35_RS09015 () | 1741837..1742046 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| F4V35_RS09020 () | 1742212..1743021 | + | 810 | WP_000010128.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| F4V35_RS09025 () | 1743018..1743584 | - | 567 | WP_001668667.1 | manganese efflux pump MntP | - |
| F4V35_RS09035 () | 1744773..1745249 | - | 477 | WP_000156246.1 | DUF986 family protein | - |
| F4V35_RS09040 () | 1745304..1746155 | - | 852 | WP_001331209.1 | PTS mannose transporter subunit IID | - |
| F4V35_RS09045 () | 1746168..1746968 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| F4V35_RS09050 () | 1747031..1748002 | - | 972 | WP_000150543.1 | PTS mannose transporter subunit IIAB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|