MGE detailed information
MGE type: Prophage MGE length: 76293 bp
Accession: NZ_CP044152 Location: 4353454..4429746 Organism: Shigella flexneri strain AR-0425 Replicon: chromosome
Accession: NZ_CP044152 Location: 4353454..4429746 Organism: Shigella flexneri strain AR-0425 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F4V37_RS21985 () | 4348683..4349420 | - | 738 | WP_000586440.1 | 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | - |
| F4V37_RS21990 () | 4349420..4350010 | - | 591 | WP_001103547.1 | imidazole glycerol phosphate synthase subunit HisH | - |
| F4V37_RS21995 () | 4350010..4351077 | - | 1068 | WP_000080068.1 | bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB | - |
| F4V37_RS22000 () | 4351077..4352147 | - | 1071 | WP_000108918.1 | histidinol-phosphate transaminase | - |
| F4V37_RS22005 () | 4352144..4353448 | - | 1305 | WP_151090831.1 | histidinol dehydrogenase | - |
| F4V37_RS22010 () | 4353454..4354353 | - | 900 | WP_000131772.1 | ATP phosphoribosyltransferase | - |
| F4V37_RS22025 () | 4354823..4355095 | + | 273 | WP_001259256.1 | YoeB-YefM toxin-antitoxin system antitoxin YefM | - |
| F4V37_RS22030 () | 4355129..4355826 | + | 698 | Protein_4240 | IS1 family transposase | - |
| F4V37_RS22035 () | 4355848..4356102 | + | 255 | WP_000767829.1 | type II toxin-antitoxin system mRNA interferase toxin YoeB | - |
| F4V37_RS22040 () | 4356185..4357009 | + | 825 | WP_000754740.1 | SDR family oxidoreductase | - |
| F4V37_RS22045 () | 4357055..4358068 | + | 1014 | WP_025755805.1 | LysR substrate-binding domain-containing protein | - |
| F4V37_RS22050 () | 4358198..4358260 | + | 63 | WP_097433929.1 | membrane protein YoeI | - |
| F4V37_RS22055 () | 4358250..4359608 | + | 1359 | WP_000019203.1 | putrescine/proton symporter PlaP | - |
| F4V37_RS22060 () | 4359787..4360845 | + | 1059 | WP_000492293.1 | thiosulfate utilization transporter TsuA/YeeE | - |
| F4V37_RS22065 () | 4360859..4361086 | + | 228 | WP_000985273.1 | thiosulfate utilization sulfurtransferase TsuB/YeeD | - |
| F4V37_RS22070 () | 4361129..4362553 | - | 1425 | WP_000132548.1 | exodeoxyribonuclease I | - |
| F4V37_RS22075 () | 4362735..4363571 | + | 837 | Protein_4249 | hypothetical protein ; Integrase | Integrase |
| F4V37_RS22080 () | 4363653..4364327 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| F4V37_RS22085 () | 4364324..4364674 | + | 351 | WP_005049241.1 | IS66 family transposase ISSfl3 | Transposase |
| F4V37_RS22090 () | 4364671..4365576 | + | 906 | Protein_4252 | IS66 family transposase ISSfl3 | Transposase |
| F4V37_RS22095 () | 4365666..4366894 | + | 1229 | WP_094081542.1 | IS3 family transposase IS2 | Transposase |
| F4V37_RS22100 () | 4366907..4367194 | + | 288 | Protein_4254 | transposase | - |
| F4V37_RS22105 () | 4367259..4367542 | + | 284 | Protein_4255 | IS3 family transposase ISSfl10 | Transposase |
| F4V37_RS22110 () | 4367598..4368295 | + | 698 | WP_227804279.1 | IS1 family transposase IS1X2 | Transposase |
| F4V37_RS22115 () | 4368313..4369191 | + | 879 | Protein_4257 | IS3 family transposase IS600 | Transposase |
| F4V37_RS22125 () | 4369235..4369651 | + | 417 | Protein_4258 | IS66 family transposase ISSfl3 | Transposase |
| F4V37_RS22130 () | 4369681..4370034 | + | 354 | Protein_4259 | hypothetical protein ; Integrase | Integrase |
| F4V37_RS22140 () | 4370086..4370472 | - | 387 | Protein_4260 | IS3 family transposase ISLad1 | Transposase |
| F4V37_RS22145 () | 4370506..4372107 | - | 1602 | WP_045177795.1 | IS66 family transposase ISSfl3 | Transposase |
| F4V37_RS22150 () | 4372104..4372283 | - | 180 | Protein_4262 | IS66 family insertion sequence element accessory protein TnpB | - |
| F4V37_RS22155 () | 4372339..4373548 | + | 1210 | Protein_4263 | IS3 family transposase IS629 | Transposase |
| F4V37_RS22160 () | 4373593..4373763 | - | 171 | Protein_4264 | IS66 family transposase ISSfl3 | Transposase |
| F4V37_RS22165 () | 4373760..4374434 | - | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| F4V37_RS22170 () | 4374519..4374803 | + | 285 | Protein_4266 | hypothetical protein | - |
| F4V37_RS22175 () | 4374975..4375304 | + | 330 | WP_000450409.1 | DUF496 family protein | - |
| F4V37_RS22180 () | 4375405..4375539 | - | 135 | WP_001297944.1 | EutP/PduV family microcompartment system protein | - |
| F4V37_RS22185 () | 4375641..4375787 | + | 147 | Protein_4269 | transposase domain-containing protein | - |
| F4V37_RS22190 () | 4376165..4377374 | - | 1210 | Protein_4270 | IS3 family transposase IS629 | Transposase |
| F4V37_RS22200 () | 4377617..4378773 | + | 1157 | WP_094081532.1 | IS3 family transposase IS600 | Transposase |
| F4V37_RS22205 () | 4378785..4379294 | + | 510 | WP_000261572.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| F4V37_RS22210 () | 4379291..4380034 | + | 744 | WP_005049317.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| F4V37_RS22215 () | 4380046..4381125 | + | 1080 | WP_001165576.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| F4V37_RS22220 () | 4381187..4382122 | + | 936 | WP_000986341.1 | L,D-transpeptidase | - |
| F4V37_RS22230 () | 4382581..4383498 | + | 918 | WP_001011445.1 | nitrogen assimilation transcriptional regulator NAC | - |
| F4V37_RS22235 () | 4383600..4384550 | + | 951 | WP_001010988.1 | HTH-type transcriptional regulator Cbl | - |
| F4V37_RS22245 () | 4384668..4386295 | + | 1628 | Protein_4278 | toxic metabolite efflux MATE transporter YeeO | - |
| F4V37_RS22255 () | 4386927..4387643 | - | 717 | WP_000532920.1 | transcriptional regulatory protein YeeN | VF |
| F4V37_RS22260 () | 4387986..4389440 | - | 1455 | WP_001060217.1 | AMP nucleosidase | - |
| F4V37_RS22265 () | 4389542..4389748 | - | 207 | WP_000466572.1 | hypothetical protein | - |
| F4V37_RS22270 () | 4389749..4390948 | - | 1200 | Protein_4282 | IS3 family transposase IS600 | Transposase |
| F4V37_RS22275 () | 4391013..4391519 | - | 507 | Protein_4283 | MFS transporter | - |
| F4V37_RS22280 () | 4391575..4392743 | + | 1169 | WP_094081534.1 | IS3 family transposase ISLad1 | Transposase |
| F4V37_RS22285 () | 4392850..4394112 | - | 1263 | Protein_4285 | hypothetical protein ; Integrase | Integrase |
| F4V37_RS22295 () | 4394450..4395247 | - | 798 | WP_001325918.1 | DgsA anti-repressor MtfA | - |
| F4V37_RS22305 () | 4395458..4396507 | - | 1050 | Protein_4287 | tyrosine-type recombinase/integrase | - |
| F4V37_RS22310 () | 4396507..4396647 | - | 141 | Protein_4288 | DUF4224 domain-containing protein | - |
| F4V37_RS22315 () | 4396674..4397090 | + | 417 | WP_005069274.1 | hypothetical protein | - |
| - | 4397672..4397730 | - | 59 | - | - | Antitoxin Detail |
| F4V37_RS22330 () | 4397742..4397897 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| F4V37_RS22340 () | 4398065..4398343 | + | 279 | WP_011069426.1 | hypothetical protein | - |
| F4V37_RS22345 () | 4398345..4399403 | + | 1059 | WP_001265248.1 | DUF968 domain-containing protein | - |
| F4V37_RS22350 () | 4399404..4399769 | + | 366 | WP_000140020.1 | RusA family crossover junction endodeoxyribonuclease | - |
| F4V37_RS22355 () | 4399766..4400454 | + | 689 | Protein_4294 | bacteriophage antitermination protein Q | - |
| F4V37_RS22385 () | 4401250..4401465 | + | 216 | WP_000839572.1 | class II holin family protein | - |
| F4V37_RS22390 () | 4401564..4402238 | + | 675 | WP_004967157.1 | IS66 family transposase ISSfl3 | Transposase |
| F4V37_RS22395 () | 4402235..4402585 | + | 351 | WP_005049241.1 | IS66 family transposase ISSfl3 | Transposase |
| F4V37_RS22400 () | 4402582..4403394 | + | 813 | Protein_4298 | IS66 family transposase ISSfl3 | Transposase |
| F4V37_RS22405 () | 4403460..4404616 | + | 1157 | WP_094105050.1 | IS3 family transposase IS600 | Transposase |
| F4V37_RS22410 () | 4404641..4405000 | + | 360 | Protein_4300 | hypothetical protein | - |
| F4V37_RS22415 () | 4405010..4405171 | + | 162 | WP_000497744.1 | DUF2635 domain-containing protein | - |
| F4V37_RS22420 () | 4405168..4406664 | + | 1497 | WP_000155744.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| F4V37_RS22425 () | 4406664..4407020 | + | 357 | WP_001062338.1 | phage tail tube protein | - |
| F4V37_RS22430 () | 4407020..4407355 | + | 336 | WP_001251340.1 | phage tail assembly protein | - |
| F4V37_RS22435 () | 4407440..4409389 | + | 1950 | WP_000785377.1 | phage tail tape measure protein | - |
| F4V37_RS22440 () | 4409457..4409939 | + | 483 | WP_000594909.1 | hypothetical protein | - |
| F4V37_RS22450 () | 4410787..4411644 | + | 858 | Protein_4308 | IS3 family transposase IS600 | Transposase |
| F4V37_RS22455 () | 4411685..4412164 | + | 480 | Protein_4309 | DUF4376 domain-containing protein | - |
| F4V37_RS22465 () | 4412344..4413987 | - | 1644 | WP_050197833.1 | hypothetical protein | VF |
| F4V37_RS22470 () | 4414303..4414971 | - | 669 | WP_000239881.1 | class I SAM-dependent methyltransferase | - |
| F4V37_RS22475 () | 4415028..4415297 | + | 270 | WP_000937511.1 | tail fiber assembly protein | - |
| F4V37_RS22485 () | 4416375..4417025 | - | 651 | WP_001007781.1 | metal-binding protein ZinT | - |
| F4V37_RS22490 () | 4417283..4417918 | - | 636 | WP_001240061.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| F4V37_RS22495 () | 4417919..4418923 | - | 1005 | Protein_4315 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| F4V37_RS22500 () | 4419032..4419445 | - | 414 | WP_000920127.1 | hydroxyisourate hydrolase | - |
| F4V37_RS22505 () | 4419578..4420249 | + | 672 | WP_001347103.1 | Sensor histidine kinase RcsC | VF |
| F4V37_RS22510 () | 4420249..4421606 | + | 1358 | Protein_4318 | two-component system sensor histidine kinase HprS | - |
| F4V37_RS22515 () | 4421714..4422565 | - | 852 | WP_000218218.1 | protein deglycase HchA | - |
| F4V37_RS22525 () | 4423936..4424106 | - | 171 | Protein_4321 | porin | - |
| F4V37_RS22530 () | 4424209..4425437 | + | 1229 | WP_111778310.1 | IS3 family transposase IS2 | Transposase |
| F4V37_RS22535 () | 4425449..4426159 | - | 711 | Protein_4323 | porin | - |
| F4V37_RS22540 () | 4426276..4427423 | + | 1148 | WP_094081536.1 | IS3 family transposase ISEhe3 | Transposase |
| F4V37_RS22545 () | 4427424..4427681 | + | 258 | WP_032155863.1 | cell division protein DrpB | - |
| F4V37_RS22550 () | 4427760..4428261 | + | 502 | Protein_4326 | HD domain-containing protein | - |
| F4V37_RS22555 () | 4428328..4429746 | + | 1419 | WP_001157215.1 | DNA-cytosine methyltransferase | - |
| F4V37_RS22560 () | 4429727..4430197 | + | 471 | WP_000228688.1 | VSPR family DNA mismatch endonuclease | - |
| F4V37_RS22565 () | 4430186..4431106 | - | 921 | WP_151090832.1 | drug/metabolite exporter YedA | - |
| F4V37_RS22570 () | 4431279..4432196 | + | 918 | WP_000922688.1 | DUF808 domain-containing protein | - |
| F4V37_RS22575 () | 4432275..4432457 | + | 183 | WP_000009302.1 | DUF2158 domain-containing protein | - |
| F4V37_RS22580 () | 4432628..4434322 | + | 1695 | Protein_4332 | cellulose biosynthesis regulator diguanylate cyclase DgcQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|