MGE detailed information
MGE type: Prophage MGE length: 59367 bp
Accession: NZ_CP044152 Location: 397305..456671 Organism: Shigella flexneri strain AR-0425 Replicon: chromosome
Accession: NZ_CP044152 Location: 397305..456671 Organism: Shigella flexneri strain AR-0425 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F4V37_RS02080 () | 392383..393183 | + | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| F4V37_RS02085 () | 393196..394047 | + | 852 | WP_001331209.1 | PTS mannose transporter subunit IID | - |
| F4V37_RS02090 () | 394102..394578 | + | 477 | WP_000156246.1 | DUF986 family protein | - |
| F4V37_RS02095 () | 394607..395304 | + | 698 | WP_227804321.1 | IS1 family transposase | - |
| F4V37_RS02100 () | 395767..396333 | + | 567 | WP_001668667.1 | manganese efflux pump MntP | - |
| F4V37_RS02105 () | 396330..397139 | - | 810 | WP_000010128.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| F4V37_RS02110 () | 397305..397514 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| F4V37_RS02115 () | 397527..397670 | - | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| F4V37_RS02120 () | 398340..398627 | - | 288 | WP_001006860.1 | YebO family protein | - |
| F4V37_RS02125 () | 398702..398845 | - | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| F4V37_RS02130 () | 399004..399243 | + | 240 | WP_001211010.1 | YobH family protein | - |
| F4V37_RS02135 () | 399386..400177 | - | 792 | WP_001262181.1 | DNA-binding transcriptional regulator KdgR | - |
| F4V37_RS02140 () | 400354..401727 | + | 1374 | WP_001127218.1 | MFS transporter | - |
| F4V37_RS02145 () | 401773..402654 | - | 882 | WP_000984517.1 | protease HtpX | - |
| F4V37_RS02150 () | 402846..404894 | - | 2049 | WP_001055799.1 | carboxy terminal-processing peptidase | - |
| F4V37_RS02155 () | 404914..405612 | - | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| F4V37_RS02160 () | 405709..406206 | - | 498 | WP_001043881.1 | L-methionine (R)-S-oxide reductase | - |
| F4V37_RS02165 () | 406336..407619 | + | 1284 | WP_001207280.1 | membrane integrity lipid transport subunit YebS | - |
| F4V37_RS02170 () | 407588..410208 | + | 2621 | Protein_422 | hypothetical protein | VF |
| F4V37_RS02175 () | 410288..411727 | + | 1440 | Protein_423 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| F4V37_RS02180 () | 411845..412081 | + | 237 | WP_001295499.1 | YebV family protein | - |
| F4V37_RS02185 () | 412186..412377 | + | 192 | WP_005049838.1 | YebW family protein | - |
| F4V37_RS02190 () | 412402..412590 | - | 189 | Protein_426 | serine/threonine-protein phosphatase | - |
| F4V37_RS02200 () | 413855..414301 | - | 447 | Protein_428 | metallophosphoesterase | - |
| F4V37_RS02215 () | 415820..417535 | + | 1716 | WP_128568580.1 | hypothetical protein | VF |
| F4V37_RS25290 () | 417605..417709 | - | 105 | Protein_431 | tail fiber assembly protein | - |
| F4V37_RS02225 () | 417715..418338 | - | 624 | WP_000930142.1 | DUF4376 domain-containing protein | - |
| F4V37_RS24945 () | 418289..418456 | - | 168 | Protein_433 | IS66 family transposase ISSfl3 | Transposase |
| F4V37_RS24950 () | 418458..418838 | - | 381 | Protein_434 | IS66 family transposase ISSfl3 | Transposase |
| F4V37_RS02235 () | 420062..420950 | + | 889 | Protein_435 | Rha family transcriptional regulator | - |
| F4V37_RS02240 () | 420947..422220 | + | 1274 | WP_094108344.1 | IS3 family transposase IS2 | Transposase |
| F4V37_RS02245 () | 422297..422518 | + | 222 | WP_000560226.1 | killing protein KilR | - |
| F4V37_RS02250 () | 422518..422688 | + | 171 | WP_001359121.1 | YdaE family protein | - |
| F4V37_RS02255 () | 422763..423038 | + | 276 | WP_005049830.1 | hypothetical protein | - |
| F4V37_RS02260 () | 423138..424553 | + | 1416 | Protein_440 | exodeoxyribonuclease VIII | - |
| F4V37_RS02265 () | 424610..425766 | - | 1157 | Protein_441 | IS3 family transposase IS600 | Transposase |
| F4V37_RS02270 () | 425865..426125 | + | 261 | WP_005135630.1 | host-nuclease inhibitor Gam family protein | - |
| F4V37_RS02275 () | 426131..427228 | + | 1098 | WP_001173294.1 | AAA family ATPase | - |
| F4V37_RS02280 () | 427303..428512 | + | 1210 | Protein_444 | IS3 family transposase IS629 | Transposase |
| F4V37_RS02285 () | 428560..428727 | + | 168 | WP_005049823.1 | excisionase family protein | - |
| F4V37_RS02290 () | 428729..428899 | + | 171 | Protein_446 | DUF3596 domain-containing protein | - |
| F4V37_RS02300 () | 429667..430308 | + | 642 | Protein_448 | hypothetical protein ; Integrase | Integrase |
| F4V37_RS02305 () | 430740..431654 | + | 915 | WP_000555620.1 | hypothetical protein | VF |
| F4V37_RS02310 () | 431654..432481 | + | 828 | WP_000983722.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| F4V37_RS02315 () | 432478..433335 | + | 858 | WP_001101728.1 | hypothetical protein | ARG |
| F4V37_RS02320 () | 433332..434189 | + | 858 | WP_000968134.1 | hypothetical protein | ARG |
| F4V37_RS02325 () | 434390..435013 | - | 624 | WP_151090730.1 | DUF4376 domain-containing protein | - |
| F4V37_RS02330 () | 434964..436232 | - | 1269 | WP_005098694.1 | prophage tail fiber N-terminal domain-containing protein | - |
| F4V37_RS02335 () | 436256..436800 | - | 545 | Protein_455 | tail fiber assembly protein | - |
| F4V37_RS02345 () | 436824..437192 | - | 369 | WP_011069357.1 | hypothetical protein | - |
| F4V37_RS02350 () | 437220..438125 | - | 906 | Protein_457 | IS3 family transposase ISSd1 | Transposase |
| F4V37_RS02360 () | 438897..439049 | - | 153 | Protein_459 | Rha family transcriptional regulator | - |
| F4V37_RS02365 () | 439433..440595 | - | 1163 | Protein_460 | IS3 family transposase ISLad1 | Transposase |
| F4V37_RS02370 () | 441417..443021 | - | 1605 | WP_000615491.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| F4V37_RS02400 () | 443655..444137 | - | 483 | WP_000068107.1 | ORF6N domain-containing protein | - |
| F4V37_RS02410 () | 445426..445599 | - | 174 | WP_000504450.1 | hypothetical protein | - |
| F4V37_RS02415 () | 445752..446306 | - | 555 | WP_000640143.1 | DUF1133 family protein | - |
| F4V37_RS02420 () | 446303..446593 | - | 291 | WP_000228038.1 | DUF1364 domain-containing protein | - |
| F4V37_RS02425 () | 446593..447192 | - | 600 | WP_000940329.1 | DUF1367 family protein | - |
| F4V37_RS02430 () | 447326..448023 | + | 698 | WP_223368647.1 | IS1 family transposase IS1X2 | Transposase |
| F4V37_RS02440 () | 448529..448684 | - | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| - | 448696..448754 | + | 59 | - | - | Antitoxin Detail |
| F4V37_RS02445 () | 449139..449504 | - | 366 | WP_000610655.1 | DUF551 domain-containing protein | - |
| F4V37_RS02450 () | 449504..450169 | - | 666 | WP_000208062.1 | hypothetical protein | - |
| F4V37_RS02455 () | 450166..450531 | - | 366 | WP_001229297.1 | HNH endonuclease signature motif containing protein | - |
| F4V37_RS02460 () | 450533..450751 | - | 219 | WP_000256998.1 | DUF4014 family protein | - |
| F4V37_RS02465 () | 450844..451200 | - | 357 | WP_005048249.1 | hypothetical protein | - |
| F4V37_RS02470 () | 451258..451680 | - | 423 | WP_001118168.1 | DUF977 family protein | - |
| F4V37_RS02475 () | 451695..452441 | - | 747 | WP_000788996.1 | ATP-binding protein | - |
| F4V37_RS25295 () | 452587..452756 | - | 170 | Protein_477 | hypothetical protein | - |
| F4V37_RS02485 () | 453235..454508 | + | 1274 | WP_094108344.1 | IS3 family transposase IS2 | Transposase |
| F4V37_RS02490 () | 454522..454932 | - | 411 | Protein_479 | YdaU family protein | - |
| F4V37_RS02495 () | 455036..456192 | + | 1157 | WP_151090731.1 | IS3 family transposase IS600 | Transposase |
| F4V37_RS02500 () | 456237..456671 | - | 435 | Protein_481 | HTH-type transcriptional regulator ArgP | VF |
| F4V37_RS02505 () | 456809..457729 | + | 921 | WP_000981715.1 | alpha/beta hydrolase | - |
| F4V37_RS24960 () | 457729..458088 | + | 360 | Protein_483 | alpha/beta hydrolase | - |
| F4V37_RS02515 () | 458105..459301 | - | 1197 | WP_005084161.1 | IS110-like element ISEc20 family transposase | - |
| F4V37_RS02520 () | 459530..460111 | + | 582 | Protein_485 | alpha/beta hydrolase | - |
| F4V37_RS02525 () | 460129..460767 | + | 639 | WP_005049763.1 | SDR family oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|