MGE detailed information
MGE type: Prophage MGE length: 39661 bp
Accession: NZ_CP044152 Location: 1538335..1577995 Organism: Shigella flexneri strain AR-0425 Replicon: chromosome
Accession: NZ_CP044152 Location: 1538335..1577995 Organism: Shigella flexneri strain AR-0425 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F4V37_RS08115 (1533750) | 1533750..1534205 | - | 456 | WP_000194195.1 | hypothetical protein | - |
| F4V37_RS08120 (1534202) | 1534202..1534537 | - | 336 | Protein_1567 | DUF2773 domain-containing protein | - |
| F4V37_RS08125 (1534692) | 1534692..1534976 | - | 285 | WP_000941942.1 | pyrimidine/purine nucleoside phosphorylase | - |
| F4V37_RS08130 (1535048) | 1535048..1535725 | - | 678 | WP_001276420.1 | AroM family protein | - |
| F4V37_RS08135 (1535983) | 1535983..1536174 | - | 192 | WP_001142439.1 | protein YaiA | - |
| F4V37_RS08140 (1536224) | 1536224..1536748 | - | 525 | WP_000193385.1 | shikimate kinase AroL | - |
| F4V37_RS08145 (1536931) | 1536931..1537389 | - | 459 | WP_000158164.1 | YaiI/YqxD family protein | - |
| F4V37_RS08150 (1537509) | 1537509..1538318 | + | 810 | WP_001295331.1 | pyrroline-5-carboxylate reductase | - |
| F4V37_RS08155 (1538335) | 1538335..1539450 | - | 1116 | WP_005053118.1 | diguanylate cyclase AdrA | - |
| F4V37_RS08160 (1539601) | 1539601..1540810 | + | 1210 | Protein_1575 | IS3 family transposase IS629 | Transposase |
| F4V37_RS08165 (1540794) | 1540794..1541992 | + | 1199 | WP_094092420.1 | IS3 family transposase ISSd1 | Transposase |
| F4V37_RS08170 (1542233) | 1542233..1542742 | + | 510 | WP_237158167.1 | phage tail protein | - |
| F4V37_RS08175 (1542796) | 1542796..1543968 | - | 1173 | WP_000551008.1 | acyltransferase | - |
| F4V37_RS08180 (1544317) | 1544317..1545480 | - | 1164 | WP_000051894.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| F4V37_RS08185 (1545666) | 1545666..1546822 | + | 1157 | WP_094081493.1 | IS3 family transposase IS600 | Transposase |
| F4V37_RS08195 (1546875) | 1546875..1547525 | + | 651 | WP_000554647.1 | hypothetical protein | - |
| F4V37_RS08200 (1547497) | 1547497..1547931 | + | 435 | WP_001223322.1 | tail fiber assembly protein | - |
| F4V37_RS08205 (1548704) | 1548704..1549753 | - | 1050 | WP_000282635.1 | acyltransferase family protein | - |
| F4V37_RS08210 (1550204) | 1550204..1551393 | + | 1190 | Protein_1584 | IS4 family transposase ISSfl9 | Transposase |
| F4V37_RS08215 (1551783) | 1551783..1553242 | - | 1460 | Protein_1585 | hypothetical protein | VF |
| F4V37_RS08220 (1553239) | 1553239..1554168 | - | 930 | WP_000703655.1 | Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase | VF |
| F4V37_RS08225 (1554165) | 1554165..1554527 | - | 363 | WP_000915845.1 | hypothetical protein | VF |
| F4V37_RS08230 (1554789) | 1554789..1555145 | - | 357 | Protein_1588 | IS91 family transposase ISTha3 | Transposase |
| F4V37_RS08240 (1556510) | 1556510..1557719 | + | 1210 | Protein_1590 | IS3 family transposase IS629 | Transposase |
| F4V37_RS08245 (1557703) | 1557703..1558062 | + | 360 | WP_000563002.1 | hypothetical protein | - |
| F4V37_RS08250 (1558062) | 1558062..1558367 | + | 306 | WP_000206732.1 | protein YfdT | - |
| F4V37_RS25415 (1558367) | 1558367..1558717 | + | 351 | WP_000433939.1 | helix-turn-helix domain-containing protein | - |
| F4V37_RS08260 (1558639) | 1558639..1559310 | + | 672 | Protein_1594 | hypothetical protein ; Integrase | Integrase |
| F4V37_RS08265 (1559376) | 1559376..1560532 | + | 1157 | WP_094081493.1 | IS3 family transposase IS600 | Transposase |
| F4V37_RS08270 (1560565) | 1560565..1561023 | + | 459 | Protein_1596 | site-specific integrase | - |
| F4V37_RS08280 (1561228) | 1561228..1562481 | - | 1254 | WP_000893267.1 | glutamate-5-semialdehyde dehydrogenase | - |
| F4V37_RS08285 (1562493) | 1562493..1563596 | - | 1104 | WP_001285281.1 | glutamate 5-kinase | - |
| F4V37_RS08295 (1564660) | 1564660..1565715 | + | 1056 | WP_000749864.1 | phosphoporin PhoE | - |
| F4V37_RS08300 (1565754) | 1565754..1566155 | - | 402 | WP_000174678.1 | sigma factor-binding protein Crl | - |
| - (1566873) | 1566873..1566953 | - | 81 | NuclAT_8 | - | - |
| - (1566873) | 1566873..1566953 | - | 81 | NuclAT_8 | - | - |
| - (1566873) | 1566873..1566953 | - | 81 | NuclAT_8 | - | - |
| - (1566873) | 1566873..1566953 | - | 81 | NuclAT_8 | - | - |
| F4V37_RS08305 (1566213) | 1566213..1567457 | - | 1245 | WP_000189558.1 | esterase FrsA | - |
| F4V37_RS08310 (1567549) | 1567549..1568007 | - | 459 | WP_001291990.1 | xanthine phosphoribosyltransferase | - |
| F4V37_RS08315 (1568269) | 1568269..1569726 | + | 1458 | WP_001293030.1 | cytosol nonspecific dipeptidase | - |
| F4V37_RS08320 (1569783) | 1569783..1570343 | - | 561 | Protein_1605 | peptide chain release factor H | - |
| F4V37_RS08325 (1570459) | 1570459..1571502 | - | 1044 | WP_005053205.1 | RNA ligase RtcB family protein | - |
| F4V37_RS08330 (1571748) | 1571748..1572200 | - | 453 | WP_001059860.1 | GNAT family N-acetyltransferase | - |
| F4V37_RS08335 (1572210) | 1572210..1572608 | - | 399 | WP_001263491.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| F4V37_RS08340 (1572611) | 1572611..1572904 | - | 294 | WP_000554759.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| F4V37_RS08345 (1572956) | 1572956..1574011 | - | 1056 | WP_001226172.1 | DNA polymerase IV | - |
| F4V37_RS08350 (1574082) | 1574082..1574867 | - | 786 | WP_000207560.1 | hypothetical protein | VF |
| F4V37_RS08355 (1574839) | 1574839..1576551 | + | 1713 | Protein_1612 | hypothetical protein | VF |
| F4V37_RS08360 (1576768) | 1576768..1577265 | - | 498 | WP_000006251.1 | REP-associated tyrosine transposase RayT | - |
| F4V37_RS08365 (1577441) | 1577441..1577962 | - | 522 | Protein_1614 | hypothetical protein | VF |
| F4V37_RS08370 (1578346) | 1578346..1579086 | + | 741 | WP_001225676.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| F4V37_RS08375 (1579057) | 1579057..1579824 | - | 768 | WP_000333379.1 | class II glutamine amidotransferase | - |
| F4V37_RS08380 (1580030) | 1580030..1580608 | - | 579 | WP_000284050.1 | D-sedoheptulose 7-phosphate isomerase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|