MGE detailed information
MGE type: Genomic_island MGE length: 13387 bp
Accession: NZ_CP044151 Location: 3976194..3989580 Organism: Shigella sonnei strain AR-0426 Replicon: chromosome
Accession: NZ_CP044151 Location: 3976194..3989580 Organism: Shigella sonnei strain AR-0426 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F4V38_RS20400 (3971255) | 3971255..3975472 | + | 4218 | WP_000508700.1 | RHS element core protein | - |
| F4V38_RS20405 (3975484) | 3975484..3975932 | + | 449 | Protein_3937 | hypothetical protein | - |
| F4V38_RS20410 (3976194) | 3976194..3977330 | + | 1137 | Protein_3938 | ISAs1 family transposase ISEc1 | Transposase |
| F4V38_RS20415 (3977461) | 3977461..3977778 | + | 318 | WP_001163457.1 | hypothetical protein | - |
| F4V38_RS20420 (3977778) | 3977778..3978155 | + | 378 | WP_001077737.1 | hypothetical protein | - |
| F4V38_RS20425 (3978623) | 3978623..3979759 | + | 1137 | WP_000420787.1 | ISAs1 family transposase ISEc1 | Transposase |
| F4V38_RS20430 (3979801) | 3979801..3980571 | - | 771 | WP_001118061.1 | 2-oxoglutaramate amidase | - |
| F4V38_RS20435 (3980752) | 3980752..3981198 | + | 447 | WP_005141527.1 | Ivy family C-type lysozyme inhibitor | - |
| F4V38_RS20440 (3981241) | 3981241..3983685 | - | 2445 | WP_000973074.1 | Crotonobetainyl-CoA dehydrogenase | VF |
| F4V38_RS20445 (3983925) | 3983925..3984503 | + | 579 | WP_000284050.1 | Phosphoheptose isomerase | VF |
| F4V38_RS20450 (3984709) | 3984709..3985476 | + | 768 | WP_000333380.1 | class II glutamine amidotransferase | - |
| F4V38_RS20455 (3985447) | 3985447..3986187 | - | 741 | WP_119170906.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| F4V38_RS20460 (3986343) | 3986343..3986621 | - | 279 | WP_000615976.1 | type II toxin-antitoxin system mRNA interferase toxin YafQ | Toxin Detail |
| F4V38_RS20465 (3986624) | 3986624..3986884 | - | 261 | WP_000729704.1 | type II toxin-antitoxin system antitoxin DinJ | Antitoxin Detail |
| F4V38_RS25945 (3987012) | 3987012..3987176 | - | 165 | WP_237158187.1 | hypothetical protein | VF |
| F4V38_RS20470 (3987100) | 3987100..3987843 | + | 744 | WP_237158188.1 | hypothetical protein | VF |
| F4V38_RS20480 (3988884) | 3988884..3989012 | + | 129 | Protein_3953 | ISAs1 family transposase | - |
| F4V38_RS20485 (3989083) | 3989083..3989580 | + | 498 | WP_000006258.1 | REP-associated tyrosine transposase RayT | - |
| F4V38_RS20490 (3989703) | 3989703..3991415 | - | 1713 | Protein_3955 | flagellar biosynthesis protein FlhA | - |
| F4V38_RS20495 (3991387) | 3991387..3992172 | + | 786 | WP_000207568.1 | putative lateral flagellar export/assembly protein LafU | - |
| F4V38_RS20500 (3992243) | 3992243..3993298 | + | 1056 | WP_001226164.1 | DNA polymerase IV | - |
| F4V38_RS20505 (3993295) | 3993295..3993747 | + | 453 | WP_119170929.1 | GNAT family N-acetyltransferase | - |
| F4V38_RS20510 (3993993) | 3993993..3994514 | + | 522 | Protein_3959 | RNA ligase RtcB family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|