MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 119324 bp
Accession: NZ_CP043904 Location: 1..119324 Organism: Shewanella sp. LC6 Replicon: plasmid pSX2_LC6
Accession: NZ_CP043904 Location: 1..119324 Organism: Shewanella sp. LC6 Replicon: plasmid pSX2_LC6
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FJD32_RS24280 () | 1..1101 | + | 1101 | WP_022635569.1 | replication protein A | - |
| FJD32_RS24285 () | 2374..2971 | - | 598 | Protein_1 | phosphohydrolase | - |
| FJD32_RS24290 () | 3238..3846 | + | 609 | WP_181159835.1 | hypothetical protein | - |
| FJD32_RS24295 () | 3851..4372 | + | 522 | WP_140907123.1 | hypothetical protein | - |
| FJD32_RS24300 () | 4375..4896 | + | 522 | WP_140907122.1 | hypothetical protein | - |
| FJD32_RS24305 () | 4995..5468 | + | 474 | WP_181159834.1 | hypothetical protein | - |
| FJD32_RS24310 () | 5479..5772 | + | 294 | WP_181159833.1 | hypothetical protein | - |
| FJD32_RS24315 () | 5777..6631 | + | 855 | WP_140907120.1 | hypothetical protein | - |
| FJD32_RS24320 () | 6631..7590 | + | 960 | WP_181159832.1 | S49 family peptidase | - |
| FJD32_RS24325 () | 7606..8466 | + | 861 | WP_140907118.1 | DsbA family protein | - |
| FJD32_RS24330 () | 8499..8927 | + | 429 | WP_140907117.1 | hypothetical protein | - |
| FJD32_RS24335 () | 8984..9349 | + | 366 | WP_140907116.1 | hypothetical protein | - |
| FJD32_RS24340 () | 9343..9789 | + | 447 | WP_140907115.1 | Fe3+-siderophore ABC transporter permease | - |
| FJD32_RS24345 () | 9786..10304 | + | 519 | WP_140907114.1 | nitrite reductase | - |
| FJD32_RS24350 () | 10304..10534 | + | 231 | WP_140907113.1 | hypothetical protein | - |
| FJD32_RS24355 () | 10521..11378 | + | 858 | WP_140907112.1 | hypothetical protein | - |
| FJD32_RS24360 () | 11290..11592 | + | 303 | WP_181159841.1 | hypothetical protein | - |
| FJD32_RS24365 () | 11608..12135 | + | 528 | WP_140907110.1 | thermonuclease family protein | - |
| FJD32_RS24370 () | 12203..12628 | + | 426 | WP_140907109.1 | ATP-binding protein | - |
| FJD32_RS24375 () | 12638..12910 | + | 273 | WP_140907108.1 | HU family DNA-binding protein | - |
| FJD32_RS24380 () | 12999..13292 | + | 294 | WP_140907107.1 | chromosome segregation protein ParM | - |
| FJD32_RS24385 () | 13321..13623 | - | 303 | WP_140907106.1 | XRE family transcriptional regulator | Antitoxin Detail |
| FJD32_RS24390 () | 13629..13979 | - | 351 | WP_013141682.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| FJD32_RS24395 () | 14419..14613 | + | 195 | WP_140907105.1 | hypothetical protein | - |
| FJD32_RS24400 () | 14624..14998 | + | 375 | WP_140907104.1 | hypothetical protein | - |
| FJD32_RS24405 () | 15081..15422 | + | 342 | WP_140907103.1 | hypothetical protein | - |
| FJD32_RS24410 () | 15440..15796 | - | 357 | WP_140907102.1 | hypothetical protein | - |
| FJD32_RS24415 () | 15893..16390 | + | 498 | WP_181159831.1 | DUF1643 domain-containing protein | - |
| FJD32_RS24420 () | 16436..17113 | - | 678 | WP_140907101.1 | hypothetical protein | - |
| FJD32_RS24425 () | 17666..18598 | + | 933 | WP_140907099.1 | hypothetical protein | - |
| FJD32_RS24430 () | 18659..18829 | + | 171 | Protein_30 | chromosome partitioning protein ParB | - |
| FJD32_RS24435 () | 19302..20552 | + | 1251 | WP_140907096.1 | site-specific DNA-methyltransferase | - |
| FJD32_RS24440 () | 20498..20749 | + | 252 | WP_140907095.1 | hypothetical protein | - |
| FJD32_RS24445 () | 20787..20972 | + | 186 | WP_181159830.1 | hypothetical protein | - |
| FJD32_RS24450 () | 21124..21342 | + | 219 | WP_140907093.1 | hypothetical protein | - |
| FJD32_RS24455 () | 21359..21613 | + | 255 | WP_140907092.1 | hypothetical protein | - |
| FJD32_RS24460 () | 21925..22709 | + | 785 | Protein_36 | hypothetical protein | VF |
| FJD32_RS24465 () | 22713..23885 | + | 1173 | WP_140907090.1 | ParB/RepB/Spo0J family partition protein | - |
| FJD32_RS24470 () | 23934..24206 | + | 273 | WP_041982374.1 | helix-turn-helix domain-containing protein | - |
| FJD32_RS24475 () | 24259..24894 | - | 636 | WP_140907216.1 | N-6 DNA methylase | - |
| FJD32_RS24480 () | 24982..25125 | - | 144 | WP_181159840.1 | hypothetical protein | - |
| FJD32_RS24485 () | 25445..25822 | + | 378 | WP_140907215.1 | hypothetical protein | - |
| FJD32_RS24490 () | 25815..26084 | + | 270 | WP_140907214.1 | hypothetical protein | - |
| FJD32_RS24495 () | 26071..26745 | + | 675 | WP_140907213.1 | thymidylate kinase | - |
| FJD32_RS24500 () | 26813..27244 | + | 432 | WP_140907227.1 | hypothetical protein | - |
| FJD32_RS24505 () | 27250..27561 | + | 312 | WP_181159839.1 | hypothetical protein | - |
| FJD32_RS24510 () | 27570..28070 | + | 501 | WP_140907211.1 | hypothetical protein | - |
| FJD32_RS24515 () | 28326..28907 | + | 582 | WP_140907210.1 | GNAT family N-acetyltransferase | - |
| FJD32_RS24520 () | 28916..28996 | - | 81 | WP_140907226.1 | DUF4113 domain-containing protein | - |
| FJD32_RS24525 () | 29124..29504 | + | 381 | WP_140907209.1 | hypothetical protein | - |
| FJD32_RS24530 () | 29530..30147 | + | 618 | WP_140907208.1 | phage head-tail adapter protein | - |
| FJD32_RS24535 () | 30178..30486 | + | 309 | WP_140907225.1 | ASCH domain-containing protein | - |
| FJD32_RS24540 () | 31297..31617 | + | 321 | WP_140907224.1 | hypothetical protein | - |
| FJD32_RS24545 () | 31644..32048 | - | 405 | WP_140907207.1 | hypothetical protein | - |
| FJD32_RS24550 () | 32059..34248 | - | 2190 | WP_140907206.1 | DNA topoisomerase 3 | - |
| FJD32_RS24555 () | 34248..34481 | - | 234 | WP_071681758.1 | hypothetical protein | - |
| FJD32_RS24560 () | 34463..35080 | - | 618 | WP_140907205.1 | hypothetical protein | - |
| FJD32_RS24565 () | 35248..38211 | + | 2964 | WP_140907204.1 | hypothetical protein | Relaxase |
| FJD32_RS24570 () | 38208..40073 | + | 1866 | WP_140907203.1 | conjugative transfer system coupling protein TraD | - |
| FJD32_RS24575 () | 40084..40668 | + | 585 | WP_031280871.1 | hypothetical protein | - |
| FJD32_RS24580 () | 40625..41254 | + | 630 | WP_140907202.1 | DUF4400 domain-containing protein | - |
| FJD32_RS24585 () | 41719..42096 | + | 378 | WP_140907200.1 | hypothetical protein | - |
| FJD32_RS24590 () | 42096..42758 | + | 663 | WP_140907199.1 | hypothetical protein | - |
| FJD32_RS24595 () | 42939..43082 | + | 144 | WP_181159838.1 | hypothetical protein | - |
| FJD32_RS24600 () | 43082..43456 | + | 375 | WP_140907198.1 | hypothetical protein | - |
| FJD32_RS24605 () | 43604..43885 | + | 282 | WP_000805625.1 | type IV conjugative transfer system protein TraL | - |
| FJD32_RS24610 () | 43882..44508 | + | 627 | WP_140907197.1 | pilus assembly protein | - |
| FJD32_RS24615 () | 44492..45409 | + | 918 | WP_140907196.1 | type-F conjugative transfer system secretin TraK | - |
| FJD32_RS24620 () | 45409..46722 | + | 1314 | WP_205403084.1 | conjugal transfer protein TraB | - |
| FJD32_RS24625 () | 46719..47297 | + | 579 | WP_140907194.1 | type IV conjugative transfer system lipoprotein TraV | - |
| FJD32_RS24630 () | 47310..47693 | + | 384 | WP_140907193.1 | TrbC/VirB2 family protein | - |
| FJD32_RS24635 () | 47886..53372 | + | 5487 | WP_140907192.1 | DUF4165 domain-containing protein | - |
| FJD32_RS24640 () | 53521..54228 | + | 708 | WP_140907191.1 | DsbC family protein | - |
| FJD32_RS24645 () | 54225..56669 | + | 2445 | WP_140907190.1 | type IV secretion system protein TraC | - |
| FJD32_RS24650 () | 56684..57001 | + | 318 | WP_140907189.1 | hypothetical protein | - |
| FJD32_RS24655 () | 56998..57528 | + | 531 | WP_140907188.1 | S26 family signal peptidase | - |
| FJD32_RS24660 () | 57491..58756 | + | 1266 | WP_140907187.1 | conjugal transfer protein TraW | - |
| FJD32_RS24665 () | 58753..59424 | + | 672 | WP_140907186.1 | EAL domain-containing protein | - |
| FJD32_RS24670 () | 59421..60428 | + | 1008 | WP_022635548.1 | TraU family protein | - |
| FJD32_RS24675 () | 60532..63348 | + | 2817 | WP_140907185.1 | conjugal transfer mating pair stabilization protein TraN | - |
| FJD32_RS24680 () | 63386..64249 | - | 864 | WP_140907184.1 | hypothetical protein | - |
| FJD32_RS24685 () | 64372..65013 | - | 642 | WP_140907183.1 | hypothetical protein | - |
| FJD32_RS24690 () | 65304..65624 | + | 321 | WP_140907182.1 | hypothetical protein | - |
| FJD32_RS24695 () | 65863..66114 | + | 252 | WP_140907181.1 | hypothetical protein | - |
| FJD32_RS24700 () | 66333..67301 | + | 969 | WP_140907180.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| FJD32_RS24705 () | 67313..68218 | + | 906 | WP_140907179.1 | hypothetical protein | - |
| FJD32_RS24710 () | 68404..69396 | + | 993 | WP_140907178.1 | phage recombination protein Bet | - |
| FJD32_RS24715 () | 69458..70468 | + | 1011 | WP_089140445.1 | YqaJ viral recombinase family protein | - |
| FJD32_RS24720 () | 70670..71932 | + | 1263 | WP_140907177.1 | DUF3150 domain-containing protein | - |
| FJD32_RS24725 () | 72017..73813 | + | 1797 | WP_140907176.1 | VWA domain-containing protein | - |
| FJD32_RS24730 () | 73941..74273 | + | 333 | WP_140907175.1 | hypothetical protein | - |
| FJD32_RS24735 () | 74548..75087 | + | 540 | WP_140907174.1 | hypothetical protein | - |
| FJD32_RS24740 () | 75168..75668 | + | 501 | WP_140907173.1 | hypothetical protein | - |
| FJD32_RS24745 () | 75742..76626 | + | 885 | WP_140907172.1 | DNA adenine modification methylase | - |
| FJD32_RS24750 () | 76692..76916 | + | 225 | WP_140907171.1 | 2Fe-2S ferredoxin-like protein | - |
| FJD32_RS24755 () | 76978..77367 | + | 390 | WP_140907170.1 | hypothetical protein | - |
| FJD32_RS24760 () | 77357..77809 | + | 453 | WP_140907169.1 | hypothetical protein | - |
| FJD32_RS24765 () | 77790..78089 | + | 300 | WP_140907223.1 | hypothetical protein | - |
| FJD32_RS24770 () | 78147..78338 | + | 192 | WP_071681719.1 | hypothetical protein | - |
| FJD32_RS24775 () | 78383..78760 | + | 378 | WP_140907168.1 | topoisomerase II | - |
| FJD32_RS24780 () | 79046..80173 | + | 1128 | WP_140907167.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| FJD32_RS24785 () | 80457..80801 | + | 345 | WP_140907166.1 | hypothetical protein | - |
| FJD32_RS24790 () | 80875..81177 | + | 303 | WP_140907165.1 | hypothetical protein | - |
| FJD32_RS24795 () | 81255..82880 | + | 1626 | WP_140907164.1 | DNA cytosine methyltransferase | - |
| FJD32_RS24800 () | 82941..83372 | + | 432 | WP_140907163.1 | hypothetical protein | - |
| FJD32_RS24805 () | 83445..83999 | + | 555 | WP_140907162.1 | hypothetical protein | - |
| FJD32_RS24810 () | 84232..84519 | + | 288 | WP_140907161.1 | hypothetical protein | - |
| FJD32_RS24815 () | 84590..87040 | + | 2451 | WP_140907160.1 | phosphoadenosine phosphosulfate reductase | - |
| FJD32_RS24820 () | 87243..87446 | + | 204 | WP_140907159.1 | hypothetical protein | - |
| FJD32_RS24825 () | 87518..88123 | + | 606 | WP_140907158.1 | 5'-deoxynucleotidase | - |
| FJD32_RS24830 () | 88116..88382 | + | 267 | WP_140907157.1 | hypothetical protein | - |
| FJD32_RS24835 () | 88379..88591 | + | 213 | WP_140907156.1 | hypothetical protein | - |
| FJD32_RS24840 () | 88696..89547 | + | 852 | WP_140907155.1 | NgrC | - |
| FJD32_RS24845 () | 90010..90396 | + | 387 | WP_140907154.1 | hypothetical protein | - |
| FJD32_RS24850 () | 90573..92300 | + | 1728 | WP_140907153.1 | toprim domain-containing protein | - |
| FJD32_RS24855 () | 92287..92568 | + | 282 | WP_140907152.1 | hypothetical protein | - |
| FJD32_RS24860 () | 92641..92880 | + | 240 | WP_021326768.1 | hypothetical protein | - |
| FJD32_RS24865 () | 92890..93006 | + | 117 | WP_181159837.1 | hypothetical protein | - |
| FJD32_RS24870 () | 93125..93499 | + | 375 | WP_140907151.1 | hypothetical protein | - |
| FJD32_RS24875 () | 93613..94338 | + | 726 | WP_140907222.1 | hypothetical protein | - |
| FJD32_RS24880 () | 94352..95191 | + | 840 | WP_140907150.1 | DUF2726 domain-containing protein | - |
| FJD32_RS24885 () | 95378..96295 | + | 918 | WP_140907221.1 | HNH endonuclease | - |
| FJD32_RS24890 () | 96395..96994 | - | 600 | WP_140907149.1 | hypothetical protein | - |
| FJD32_RS24895 () | 97740..98750 | + | 1011 | WP_140907147.1 | tyrosine-type recombinase/integrase | - |
| FJD32_RS24900 () | 98755..99624 | + | 870 | WP_140907146.1 | 3'-5' exonuclease | - |
| FJD32_RS24905 () | 99621..100112 | + | 492 | WP_140907145.1 | hypothetical protein | - |
| FJD32_RS24910 () | 100304..100555 | + | 252 | WP_140907144.1 | hypothetical protein | - |
| FJD32_RS24915 () | 100719..101153 | + | 435 | WP_140907143.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| FJD32_RS24920 () | 101141..102394 | + | 1254 | WP_140907142.1 | Y-family DNA polymerase | - |
| FJD32_RS24925 () | 102492..102692 | + | 201 | WP_140907141.1 | hypothetical protein | - |
| FJD32_RS24930 () | 102995..103870 | + | 876 | WP_140907140.1 | DNA replication terminus site-binding protein | - |
| FJD32_RS24935 () | 104019..105059 | + | 1041 | WP_140907139.1 | DNA-binding protein | - |
| FJD32_RS24940 () | 105346..106857 | + | 1512 | WP_140907137.1 | ATP-dependent helicase | - |
| FJD32_RS24945 () | 106969..108009 | + | 1041 | WP_140907136.1 | conjugal transfer protein TraF | - |
| FJD32_RS24950 () | 108011..109444 | + | 1434 | WP_140907135.1 | conjugal transfer protein TraH | - |
| FJD32_RS24955 () | 109457..113134 | + | 3678 | WP_140907134.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| FJD32_RS24960 () | 113341..113549 | - | 209 | Protein_136 | permease | - |
| FJD32_RS24965 () | 114264..114536 | + | 273 | WP_140907133.1 | helix-turn-helix domain-containing protein | - |
| FJD32_RS24970 () | 114536..115069 | + | 534 | WP_140907132.1 | transglycosylase SLT domain-containing protein | - |
| FJD32_RS24975 () | 115081..115689 | + | 609 | WP_140907131.1 | flagellar transcriptional regulator FlhD | - |
| FJD32_RS24980 () | 115686..116237 | + | 552 | WP_140907130.1 | regulator | - |
| FJD32_RS24985 () | 116297..116716 | - | 420 | WP_140907129.1 | H-NS histone family protein | - |
| FJD32_RS24990 () | 116718..117011 | - | 294 | WP_140907128.1 | hypothetical protein | - |
| FJD32_RS24995 () | 117028..118011 | - | 984 | WP_140907220.1 | ParM/StbA family protein | - |
| FJD32_RS25000 () | 118126..118395 | - | 270 | WP_140907127.1 | hypothetical protein | - |
| FJD32_RS25005 () | 118509..119048 | + | 540 | WP_181159842.1 | hypothetical protein | - |
| FJD32_RS25010 () | 119053..119324 | + | 272 | WP_205403082.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|