MGE detailed information
MGE type: Conjugative plasmid MGE length: 146074 bp
Accession: NZ_CP043829 Location: 1..146074 Organism: Escherichia coli strain RM8082 Replicon: plasmid p1RM8082
Accession: NZ_CP043829 Location: 1..146074 Organism: Escherichia coli strain RM8082 Replicon: plasmid p1RM8082
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F1745_RS26860 (159) | 159..698 | + | 540 | WP_000290801.1 | single-stranded DNA-binding protein | - |
| F1745_RS26865 (755) | 755..862 | + | 108 | Protein_1 | DUF905 family protein | - |
| F1745_RS26870 (948) | 948..1694 | - | 747 | WP_001016257.1 | IS21 family transposase ISEc12 | Transposase |
| F1745_RS26875 (1709) | 1709..3250 | - | 1542 | WP_001298859.1 | IS21 family transposase ISEc12 | Transposase |
| F1745_RS26880 (3437) | 3437..3574 | + | 138 | Protein_4 | DUF905 family protein | - |
| F1745_RS26885 (3640) | 3640..5604 | + | 1965 | WP_238014343.1 | ParB/RepB/Spo0J family partition protein | - |
| F1745_RS26890 (5673) | 5673..6107 | + | 435 | WP_000845915.1 | conjugation system SOS inhibitor PsiB | - |
| F1745_RS26895 (6104) | 6104..6866 | + | 763 | Protein_7 | plasmid SOS inhibition protein A | - |
| - (6835) | 6835..7033 | + | 199 | NuclAT_0 | - | - |
| - (6835) | 6835..7033 | + | 199 | NuclAT_0 | - | - |
| - (6835) | 6835..7033 | + | 199 | NuclAT_0 | - | - |
| - (6835) | 6835..7033 | + | 199 | NuclAT_0 | - | - |
| F1745_RS26900 (7040) | 7040..7189 | + | 150 | Protein_8 | DUF5431 family protein | - |
| F1745_RS26905 (7140) | 7140..7256 | + | 117 | WP_001375150.1 | type I toxin-antitoxin system Hok family toxin | - |
| F1745_RS26910 (7557) | 7557..7853 | - | 297 | Protein_10 | hypothetical protein | - |
| F1745_RS26915 (7923) | 7923..8129 | + | 207 | WP_000547963.1 | hypothetical protein | - |
| F1745_RS26920 (8154) | 8154..8441 | + | 288 | WP_000107542.1 | hypothetical protein | - |
| F1745_RS26925 (8560) | 8560..9381 | + | 822 | WP_047088522.1 | DUF932 domain-containing protein | - |
| F1745_RS26930 (9676) | 9676..10266 | - | 591 | WP_001375132.1 | hypothetical protein | VF |
| F1745_RS26935 (10599) | 10599..10982 | + | 384 | WP_001151524.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| F1745_RS26940 (11169) | 11169..11858 | + | 690 | WP_000283385.1 | conjugal transfer transcriptional regulator TraJ | - |
| F1745_RS26945 (11951) | 11951..12352 | + | 402 | WP_001369361.1 | conjugal transfer relaxosome DNA-bindin protein TraY | - |
| F1745_RS26950 (12385) | 12385..12750 | + | 366 | WP_000994779.1 | type IV conjugative transfer system pilin TraA | - |
| F1745_RS26955 (12765) | 12765..13076 | + | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| F1745_RS26960 (13098) | 13098..13664 | + | 567 | WP_000399792.1 | type IV conjugative transfer system protein TraE | - |
| F1745_RS26965 (13651) | 13651..14379 | + | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| F1745_RS26970 (14379) | 14379..15804 | + | 1426 | Protein_22 | conjugal transfer protein TraB | - |
| F1745_RS26975 (15794) | 15794..16384 | + | 591 | WP_000002792.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| F1745_RS26980 (16371) | 16371..16568 | + | 198 | WP_032215009.1 | conjugal transfer protein TrbD | - |
| F1745_RS26985 (16580) | 16580..16831 | + | 252 | WP_001038342.1 | conjugal transfer protein TrbG | - |
| F1745_RS26990 (16828) | 16828..17343 | + | 516 | WP_000809843.1 | type IV conjugative transfer system lipoprotein TraV | - |
| F1745_RS26995 (17478) | 17478..17699 | + | 222 | WP_001278689.1 | conjugal transfer protein TraR | - |
| F1745_RS27000 (17859) | 17859..20486 | + | 2628 | WP_032215011.1 | type IV secretion system protein TraC | - |
| F1745_RS27005 (20483) | 20483..20869 | + | 387 | WP_000099690.1 | type-F conjugative transfer system protein TrbI | - |
| F1745_RS27010 (20866) | 20866..21497 | + | 632 | Protein_30 | type-F conjugative transfer system protein TraW | - |
| F1745_RS27015 (21494) | 21494..22486 | + | 993 | WP_000830185.1 | conjugal transfer pilus assembly protein TraU | - |
| F1745_RS27020 (22495) | 22495..23133 | + | 639 | WP_000777695.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| F1745_RS27025 (23130) | 23130..24938 | + | 1809 | WP_032215012.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| F1745_RS27030 (24965) | 24965..25222 | + | 258 | WP_000864318.1 | conjugal transfer protein TrbE | - |
| F1745_RS27035 (25215) | 25215..25958 | + | 744 | WP_032215013.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| F1745_RS27040 (25974) | 25974..26321 | + | 348 | WP_047088425.1 | conjugal transfer protein TrbA | - |
| F1745_RS27045 (26440) | 26440..26724 | + | 285 | WP_000624108.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| F1745_RS27050 (26711) | 26711..27256 | + | 546 | WP_032215016.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| F1745_RS27055 (27186) | 27186..27527 | + | 342 | WP_001442101.1 | P-type conjugative transfer protein TrbJ | - |
| F1745_RS27060 (27514) | 27514..27906 | + | 393 | WP_032215052.1 | F-type conjugal transfer protein TrbF | - |
| F1745_RS27065 (27893) | 27893..29266 | + | 1374 | WP_032215018.1 | conjugal transfer pilus assembly protein TraH | - |
| F1745_RS27070 (29263) | 29263..32082 | + | 2820 | WP_032215020.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| F1745_RS27075 (32085) | 32085..32396 | - | 312 | WP_000522220.1 | heavy metal-binding domain-containing protein | - |
| F1745_RS27080 (32611) | 32611..33399 | + | 789 | WP_032215022.1 | hypothetical protein | - |
| F1745_RS27085 (33625) | 33625..35777 | + | 2153 | Protein_45 | type IV conjugative transfer system coupling protein TraD | - |
| F1745_RS27090 (35786) | 35786..36184 | - | 399 | WP_000911317.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| F1745_RS27095 (36184) | 36184..36411 | - | 228 | WP_000450532.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| F1745_RS27100 (36493) | 36493..41762 | + | 5270 | Protein_48 | Multifunctional conjugation protein TraI | Relaxase |
| F1745_RS27105 (41782) | 41782..42528 | + | 747 | WP_032215026.1 | conjugal transfer pilus acetylase TraX | - |
| F1745_RS27110 (42587) | 42587..43447 | + | 861 | WP_000704522.1 | putative protein YcjY | VF |
| F1745_RS27115 (43550) | 43550..44110 | + | 561 | WP_032215028.1 | fertility inhibition protein FinO | - |
| F1745_RS27120 (44241) | 44241..44450 | + | 210 | WP_001297500.1 | hypothetical protein | - |
| F1745_RS27125 (44862) | 44862..45488 | + | 627 | WP_032215029.1 | NYN domain-containing protein | - |
| F1745_RS27130 (45640) | 45640..46230 | + | 591 | WP_001297502.1 | DUF2726 domain-containing protein | - |
| F1745_RS27135 (46470) | 46470..46727 | + | 258 | WP_001473586.1 | replication regulatory protein RepA | - |
| F1745_RS27140 (46960) | 46960..47034 | + | 75 | WP_001365705.1 | RepA leader peptide Tap | - |
| F1745_RS27145 (47027) | 47027..47884 | + | 858 | WP_047088494.1 | incFII family plasmid replication initiator RepA | - |
| F1745_RS27150 (48815) | 48815..49213 | + | 399 | WP_238014346.1 | hypothetical protein | - |
| F1745_RS27155 (49210) | 49210..49698 | + | 489 | WP_238014349.1 | hypothetical protein | - |
| F1745_RS27160 (49694) | 49694..49863 | + | 170 | Protein_60 | resolvase | - |
| F1745_RS27165 (50118) | 50118..50264 | + | 147 | Protein_61 | 3'-5' exonuclease | - |
| F1745_RS27170 (50600) | 50600..51091 | - | 492 | Protein_62 | IS21 family transposase IS21 | Transposase |
| F1745_RS27175 (51091) | 51091..52263 | - | 1173 | WP_047088057.1 | IS21 family transposase IS21 | Transposase |
| F1745_RS27180 (52329) | 52329..52475 | + | 147 | WP_238014358.1 | hypothetical protein | - |
| F1745_RS27185 (52512) | 52512..56411 | + | 3900 | WP_032215036.1 | Temperature-sensitive hemagglutinin tsh autotransporter | VF |
| F1745_RS27190 (56561) | 56561..56734 | - | 174 | Protein_66 | anaerobic sulfite reductase subunit C | - |
| F1745_RS27195 (56767) | 56767..58295 | - | 1529 | Protein_67 | IS66 family transposase ISSfl3 | Transposase |
| F1745_RS27200 (58304) | 58304..59326 | + | 1023 | WP_000255944.1 | IS21 family transposase IS100kyp | Transposase |
| F1745_RS27205 (59323) | 59323..60105 | + | 783 | WP_001300609.1 | IS21 family transposase IS100kyp | Transposase |
| F1745_RS27210 (60292) | 60292..60639 | - | 348 | WP_032215038.1 | IS66 family transposase ISSfl3 | Transposase |
| F1745_RS27215 (60636) | 60636..61310 | - | 675 | WP_032215039.1 | IS66 family transposase ISSfl3 | Transposase |
| F1745_RS27220 (61397) | 61397..61561 | + | 165 | Protein_72 | IS66 family insertion sequence element accessory protein TnpB | - |
| F1745_RS27225 (61648) | 61648..61794 | + | 147 | Protein_73 | transposase domain-containing protein | - |
| F1745_RS27230 (61835) | 61835..62210 | + | 376 | Protein_74 | transposase | - |
| F1745_RS27235 (63224) | 63224..63874 | + | 651 | WP_238014361.1 | HTH-type transcriptional regulator GadW | VF |
| F1745_RS27240 (65178) | 65178..65318 | + | 141 | Protein_76 | PerC family transcriptional regulator | - |
| F1745_RS27245 (65484) | 65484..65738 | + | 255 | WP_032215042.1 | hypothetical protein | - |
| F1745_RS27250 (66092) | 66092..66249 | + | 158 | Protein_78 | IS256 family transposase | - |
| F1745_RS27255 (66298) | 66298..67324 | - | 1027 | Protein_79 | IS3 family transposase | - |
| F1745_RS27260 (67404) | 67404..67579 | + | 176 | Protein_80 | transposase | - |
| F1745_RS27265 (68157) | 68157..69320 | + | 1164 | WP_096933488.1 | autotransporter strand-loop-strand O-heptosyltransferase | - |
| F1745_RS27270 (69529) | 69529..69945 | + | 417 | Protein_82 | putative autotransporter | VF |
| F1745_RS27275 (70174) | 70174..72969 | + | 2796 | WP_238014364.1 | putative autotransporter | VF |
| F1745_RS27280 (73119) | 73119..73316 | + | 198 | Protein_84 | IS3 family transposase IS911 | Transposase |
| F1745_RS27285 (73273) | 73273..73409 | + | 137 | Protein_85 | IS3 family transposase | - |
| F1745_RS27290 (73635) | 73635..74858 | + | 1224 | Protein_86 | IS3 family transposase | - |
| F1745_RS27295 (74867) | 74867..75098 | + | 232 | Protein_87 | transposase | - |
| F1745_RS27300 (75224) | 75224..76279 | - | 1056 | WP_047089231.1 | EAL domain-containing protein | - |
| F1745_RS27305 (76390) | 76390..76806 | - | 417 | WP_047089230.1 | hypothetical protein | - |
| F1745_RS27310 (76952) | 76952..77530 | - | 579 | WP_032215189.1 | polymer-forming cytoskeletal protein | - |
| F1745_RS27315 (77537) | 77537..77950 | - | 414 | WP_032215190.1 | hypothetical protein | - |
| F1745_RS27320 (78552) | 78552..78740 | - | 189 | WP_032215191.1 | hypothetical protein | - |
| F1745_RS27325 (79501) | 79501..80829 | + | 1329 | WP_223716319.1 | ISNCY family transposase ISKpn21 | Transposase |
| F1745_RS27330 (81008) | 81008..82354 | + | 1347 | Protein_94 | ISNCY family transposase ISLad2 | Transposase |
| F1745_RS27335 (82519) | 82519..83223 | + | 705 | WP_032215193.1 | hypothetical protein | VF |
| F1745_RS27340 (83649) | 83649..83798 | + | 150 | Protein_96 | transposase | - |
| F1745_RS27345 (83854) | 83854..84636 | - | 783 | WP_001300609.1 | IS21 family transposase IS100kyp | Transposase |
| F1745_RS27350 (84633) | 84633..85655 | - | 1023 | WP_000255944.1 | IS21 family transposase IS100kyp | Transposase |
| F1745_RS27355 (85724) | 85724..86430 | + | 707 | Protein_99 | IS66 family transposase ISEc23 | Transposase |
| F1745_RS27360 (86866) | 86866..87255 | - | 390 | WP_032215195.1 | cytochrome b562 | - |
| F1745_RS27365 (87298) | 87298..89511 | - | 2214 | WP_032215196.1 | Catalase-peroxidase | VF |
| F1745_RS27370 (90003) | 90003..90677 | + | 675 | WP_064734886.1 | hypothetical protein | - |
| F1745_RS27375 (91046) | 91046..91934 | + | 889 | Protein_103 | IS3 family transposase | - |
| F1745_RS27380 (91950) | 91950..92199 | - | 250 | Protein_104 | IS66 family insertion sequence element accessory protein TnpB | - |
| F1745_RS27385 (92278) | 92278..92655 | + | 378 | Protein_105 | IS66 family transposase ISCro1 | Transposase |
| F1745_RS27390 (93084) | 93084..93656 | - | 573 | WP_238014322.1 | hypothetical protein | - |
| F1745_RS27395 (94368) | 94368..99095 | - | 4728 | WP_238014325.1 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| F1745_RS27400 (99447) | 99447..100536 | - | 1090 | Protein_108 | IS3 family transposase | - |
| F1745_RS27405 (100735) | 100735..101821 | - | 1087 | Protein_109 | IS3 family transposase IS3F | Transposase |
| F1745_RS27410 (101954) | 101954..102079 | + | 126 | Protein_110 | serine/threonine protein kinase | - |
| F1745_RS27415 (102200) | 102200..102940 | + | 741 | WP_032215122.1 | site-specific integrase | - |
| F1745_RS27420 (103183) | 103183..104160 | - | 978 | WP_032215123.1 | RepB family plasmid replication initiator protein | - |
| F1745_RS27425 (105099) | 105099..105245 | - | 147 | WP_238014328.1 | IS21 family transposase IS21 | Transposase |
| F1745_RS27430 (105372) | 105372..105485 | + | 114 | Protein_114 | transposase domain-containing protein | - |
| F1745_RS27435 (105829) | 105829..106818 | + | 990 | Protein_115 | IS256 family transposase ISEic2 | Transposase |
| F1745_RS27440 (106766) | 106766..107483 | + | 718 | Protein_116 | colicin Ia family protein | - |
| F1745_RS27445 (107543) | 107543..108668 | - | 1126 | Protein_117 | IS3 family transposase ISKpn38 | Transposase |
| F1745_RS27450 (109978) | 109978..110490 | + | 513 | WP_032215126.1 | Hemolysin-activating lysine-acyltransferase HlyC | VF |
| F1745_RS27455 (110502) | 110502..113576 | + | 3075 | WP_032215128.1 | Hemolysin, plasmid | VF |
| F1745_RS27460 (113647) | 113647..115769 | + | 2123 | Protein_120 | Alpha-hemolysin translocation ATP-binding protein HlyB | VF |
| F1745_RS27465 (115788) | 115788..117224 | + | 1437 | WP_032215131.1 | Hemolysin secretion protein D, plasmid | VF |
| F1745_RS27470 (117302) | 117302..117644 | + | 343 | Protein_122 | IS3 family transposase | - |
| F1745_RS27475 (117700) | 117700..117855 | + | 156 | Protein_123 | transposase domain-containing protein | - |
| F1745_RS27480 (118093) | 118093..119040 | + | 948 | WP_032215132.1 | Outer membrane protease OmpP | VF |
| F1745_RS27485 (119133) | 119133..120632 | + | 1500 | WP_032215133.1 | alpha/beta hydrolase | - |
| F1745_RS27490 (121023) | 121023..121307 | + | 285 | WP_001352814.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| F1745_RS27495 (121295) | 121295..121780 | + | 486 | WP_000501973.1 | GNAT family N-acetyltransferase | Toxin Detail |
| F1745_RS27500 (121870) | 121870..123198 | + | 1329 | WP_047088448.1 | IS4 family transposase IS4 | Transposase |
| F1745_RS27505 (123516) | 123516..124538 | - | 1023 | WP_032215002.1 | IS110 family transposase ISSm1 | Transposase |
| F1745_RS27510 (125274) | 125274..125477 | + | 204 | Protein_130 | IS256 family transposase ISEic2 | Transposase |
| F1745_RS27515 (125641) | 125641..126279 | - | 639 | WP_032215003.1 | ParB N-terminal domain-containing protein | - |
| F1745_RS27520 (126264) | 126264..127490 | - | 1227 | WP_032215004.1 | phosphoadenosine phosphosulfate reductase | - |
| F1745_RS27525 (128560) | 128560..128694 | + | 135 | Protein_133 | IS66 family transposase IS679 | Transposase |
| F1745_RS27530 (129046) | 129046..130599 | - | 1554 | WP_223716268.1 | Outer membrane protein IcsA autotransporter | VF |
| F1745_RS27535 (131659) | 131659..131809 | - | 151 | Protein_135 | transposase | - |
| F1745_RS27540 (133876) | 133876..134094 | + | 219 | WP_000813639.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| F1745_RS27545 (134096) | 134096..134401 | + | 306 | WP_001159871.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| F1745_RS27550 (134402) | 134402..135185 | + | 784 | Protein_138 | site-specific integrase | - |
| F1745_RS27555 (135906) | 135906..136661 | + | 756 | WP_000852146.1 | replication initiation protein RepE | - |
| F1745_RS27560 (137249) | 137249..138415 | + | 1167 | WP_000772446.1 | Sporulation initiation inhibitor protein Soj | VF |
| F1745_RS27565 (138415) | 138415..139386 | + | 972 | WP_000817031.1 | ParB/RepB/Spo0J family plasmid partition protein | - |
| F1745_RS27570 (140468) | 140468..141370 | + | 903 | Protein_142 | DUF1281 domain-containing protein | - |
| F1745_RS27575 (141374) | 141374..141679 | + | 306 | WP_010892536.1 | hypothetical protein | - |
| F1745_RS27580 (141756) | 141756..142439 | + | 684 | WP_000085939.1 | DNA methylase | - |
| F1745_RS27585 (142440) | 142440..142661 | + | 222 | WP_001104904.1 | hypothetical protein | - |
| F1745_RS27590 (142555) | 142555..143109 | + | 555 | WP_001358893.1 | DUF1380 family protein | - |
| F1745_RS27595 (143155) | 143155..143931 | + | 777 | WP_001005032.1 | hypothetical protein | - |
| F1745_RS27600 (144345) | 144345..144770 | + | 426 | WP_032215007.1 | antirestriction protein | - |
| F1745_RS27605 (144817) | 144817..145239 | + | 423 | WP_000271685.1 | DUF1380 family protein | - |
| F1745_RS27610 (145236) | 145236..145427 | + | 192 | WP_001027495.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|