MGE detailed information
MGE type: Prophage MGE length: 50971 bp
Accession: NZ_CP043825 Location: 4946202..4997172 Organism: Escherichia coli strain RM8082 Replicon: chromosome
Accession: NZ_CP043825 Location: 4946202..4997172 Organism: Escherichia coli strain RM8082 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| F1745_RS24450 (4941903) | 4941903..4945682 | + | 3780 | WP_238013801.1 | autotransporter assembly complex protein TamB | - |
| F1745_RS24455 (4945685) | 4945685..4946026 | + | 342 | WP_001219160.1 | gamma-glutamylcyclotransferase | - |
| F1745_RS24460 (4946202) | 4946202..4946444 | + | 243 | WP_238013804.1 | DUF4177 domain-containing protein | - |
| F1745_RS24465 (4946800) | 4946800..4946940 | - | 141 | WP_000078920.1 | Hok/Gef family protein | - |
| F1745_RS24470 (4947132) | 4947132..4947392 | - | 261 | WP_001383550.1 | ogr/Delta-like zinc finger family protein | - |
| F1745_RS24475 (4947435) | 4947435..4948544 | - | 1110 | WP_047615761.1 | phage late control D family protein | - |
| F1745_RS24480 (4948702) | 4948702..4949886 | + | 1185 | WP_137586221.1 | phage tail sheath family protein | - |
| F1745_RS24485 (4949886) | 4949886..4950398 | + | 513 | WP_044782596.1 | phage major tail tube protein | - |
| F1745_RS24490 (4950454) | 4950454..4950828 | + | 375 | WP_000651572.1 | tail protein | - |
| F1745_RS24495 (4950837) | 4950837..4950992 | + | 156 | WP_000333503.1 | GpE family phage tail protein | - |
| F1745_RS24500 (4950979) | 4950979..4953786 | + | 2808 | WP_238013807.1 | phage tail tape measure protein | - |
| F1745_RS24505 (4953799) | 4953799..4954287 | + | 489 | WP_000979945.1 | phage tail protein | - |
| F1745_RS24510 (4954316) | 4954316..4954915 | - | 600 | WP_000905061.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| F1745_RS24515 (4955086) | 4955086..4955689 | + | 604 | Protein_4787 | phage tail protein | - |
| F1745_RS24520 (4955692) | 4955692..4956225 | + | 534 | WP_000972139.1 | tail fiber assembly protein | - |
| F1745_RS24525 (4956254) | 4956254..4956781 | - | 528 | WP_001164120.1 | tail fiber assembly protein | - |
| F1745_RS24530 (4956785) | 4956785..4958935 | - | 2151 | WP_238013811.1 | phage tail protein | - |
| F1745_RS24535 (4958938) | 4958938..4959468 | - | 531 | WP_001557882.1 | phage tail protein I | - |
| F1745_RS24540 (4959461) | 4959461..4960357 | - | 897 | WP_021514985.1 | baseplate J/gp47 family protein | - |
| F1745_RS24545 (4960361) | 4960361..4960711 | - | 351 | WP_000213447.1 | GPW/gp25 family protein | - |
| F1745_RS24550 (4960708) | 4960708..4961274 | - | 567 | WP_001678347.1 | phage baseplate assembly protein V | - |
| F1745_RS24555 (4961286) | 4961286..4961921 | - | 636 | WP_238013814.1 | phage virion morphogenesis protein | - |
| F1745_RS24560 (4961914) | 4961914..4962380 | - | 467 | Protein_4796 | phage tail protein | - |
| F1745_RS24565 (4962518) | 4962518..4962925 | - | 408 | WP_000780541.1 | DUF2570 domain-containing protein | - |
| F1745_RS24570 (4962922) | 4962922..4963314 | - | 393 | WP_000072327.1 | M15 family metallopeptidase | - |
| F1745_RS24575 (4963311) | 4963311..4963634 | - | 324 | WP_001092398.1 | phage holin, lambda family | - |
| F1745_RS24580 (4963582) | 4963582..4963836 | - | 255 | WP_115194660.1 | tail protein X | - |
| F1745_RS24585 (4963836) | 4963836..4964330 | - | 495 | WP_000063103.1 | head completion/stabilization protein | - |
| F1745_RS24590 (4964433) | 4964433..4965233 | - | 801 | WP_000632336.1 | phage terminase small subunit | - |
| F1745_RS24595 (4965279) | 4965279..4966331 | - | 1053 | WP_001055104.1 | phage major capsid protein, P2 family | - |
| F1745_RS24600 (4966355) | 4966355..4967191 | - | 837 | WP_001262654.1 | GPO family capsid scaffolding protein | - |
| F1745_RS24605 (4967345) | 4967345..4969096 | + | 1752 | WP_000613781.1 | terminase family protein | - |
| F1745_RS24610 (4969096) | 4969096..4970142 | + | 1047 | WP_089576155.1 | phage portal protein | - |
| F1745_RS24615 (4970157) | 4970157..4970681 | - | 525 | WP_238013817.1 | hypothetical protein | - |
| F1745_RS24620 (4971548) | 4971548..4972156 | + | 609 | WP_238013833.1 | DUF4760 domain-containing protein | - |
| F1745_RS24625 (4972202) | 4972202..4972513 | - | 312 | WP_000211256.1 | plasmid partitioning/stability family protein | - |
| F1745_RS24630 (4972518) | 4972518..4973477 | - | 960 | WP_047615960.1 | plasmid segregation protein ParM | - |
| F1745_RS24635 (4973554) | 4973554..4976376 | - | 2823 | WP_238013836.1 | replication endonuclease | - |
| F1745_RS24640 (4976383) | 4976383..4976748 | - | 366 | WP_040090118.1 | hypothetical protein | - |
| F1745_RS24645 (4976821) | 4976821..4977051 | - | 231 | WP_024249625.1 | hypothetical protein | - |
| F1745_RS24650 (4977423) | 4977423..4978253 | - | 831 | WP_021580378.1 | SPFH domain-containing protein | - |
| F1745_RS24655 (4978250) | 4978250..4978453 | - | 204 | WP_001036813.1 | hypothetical protein | - |
| F1745_RS24660 (4978465) | 4978465..4978764 | - | 300 | WP_238013854.1 | hypothetical protein | - |
| F1745_RS24665 (4978761) | 4978761..4979006 | - | 246 | WP_032082656.1 | helix-turn-helix domain-containing protein | - |
| F1745_RS24670 (4979003) | 4979003..4979206 | - | 204 | WP_047615943.1 | hypothetical protein | - |
| F1745_RS24675 (4979230) | 4979230..4979640 | - | 411 | WP_047615940.1 | hypothetical protein | - |
| F1745_RS24680 (4979734) | 4979734..4979847 | - | 114 | WP_001519659.1 | hypothetical protein | - |
| F1745_RS24685 (4979844) | 4979844..4980086 | - | 243 | WP_000514277.1 | DUF4754 family protein | - |
| F1745_RS24690 (4980365) | 4980365..4980715 | - | 351 | WP_089576159.1 | DUF4761 family protein | - |
| F1745_RS24695 (4980753) | 4980753..4981178 | - | 426 | WP_052318234.1 | Cox family DNA-binding protein | - |
| F1745_RS24700 (4981305) | 4981305..4981586 | + | 282 | WP_227454766.1 | helix-turn-helix transcriptional regulator | - |
| F1745_RS24705 (4981653) | 4981653..4982648 | + | 996 | WP_238013856.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| F1745_RS24710 (4982939) | 4982939..4983190 | + | 252 | WP_001223208.1 | type II toxin-antitoxin system antitoxin ChpS | Antitoxin Detail |
| F1745_RS24715 (4983184) | 4983184..4983534 | + | 351 | WP_000239576.1 | endoribonuclease toxin ChpB | Toxin Detail |
| F1745_RS24720 (4983614) | 4983614..4984144 | - | 531 | WP_000055075.1 | inorganic diphosphatase | - |
| F1745_RS24725 (4984454) | 4984454..4985410 | + | 957 | WP_000265933.1 | galactofuranose ABC transporter substrate-binding protein YtfQ | - |
| F1745_RS24730 (4985550) | 4985550..4987052 | + | 1503 | WP_000205795.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| F1745_RS24735 (4987066) | 4987066..4988088 | + | 1023 | WP_001296689.1 | ABC transporter permease | - |
| F1745_RS24740 (4988075) | 4988075..4989070 | + | 996 | WP_000596016.1 | sugar ABC transporter permease YjfF | - |
| F1745_RS24745 (4989103) | 4989103..4990101 | - | 999 | WP_000853753.1 | class 1 fructose-bisphosphatase | - |
| F1745_RS24750 (4990277) | 4990277..4991650 | + | 1374 | WP_001219792.1 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase | - |
| F1745_RS24755 (4991801) | 4991801..4992352 | - | 552 | WP_000166270.1 | ribosome biogenesis factor YjgA | - |
| F1745_RS24760 (4992446) | 4992446..4993798 | + | 1353 | WP_001162171.1 | metalloprotease PmbA | - |
| F1745_RS24765 (4993981) | 4993981..4994367 | + | 387 | WP_001232243.1 | cytochrome b562 | - |
| F1745_RS24770 (4994412) | 4994412..4994876 | - | 465 | WP_001106236.1 | anaerobic ribonucleoside-triphosphate reductase-activating protein | - |
| F1745_RS24775 (4995034) | 4995034..4997172 | - | 2139 | WP_000187795.1 | anaerobic ribonucleoside-triphosphate reductase | - |
| F1745_RS24780 (4997566) | 4997566..4999221 | - | 1656 | WP_001349797.1 | alpha,alpha-phosphotrehalase | - |
| F1745_RS24785 (4999271) | 4999271..5000692 | - | 1422 | WP_001299664.1 | PTS trehalose transporter subunit IIBC | - |
| F1745_RS24790 (5000811) | 5000811..5001758 | - | 948 | WP_068866576.1 | trehalose operon repressor TreR | - |
| F1745_RS24795 (5001943) | 5001943..5001996 | + | 54 | WP_001387276.1 | mgtA regulatory leader peptide MgtL | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|