MGE detailed information
MGE type: Conjugative plasmid MGE length: 99510 bp
Accession: NZ_CP043589 Location: 1..99510 Organism: Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015096 Replicon: plasmid pNDM1_015096
Accession: NZ_CP043589 Location: 1..99510 Organism: Klebsiella pneumoniae subsp. pneumoniae strain WCHKP015096 Replicon: plasmid pNDM1_015096
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CLR01_RS25360 (CLR01_25515) | 1274..2013 | - | 740 | Protein_1 | site-specific integrase | - |
| CLR01_RS25365 (CLR01_25520) | 2531..2647 | + | 117 | Protein_2 | IS5 family transposase IS5D | Transposase |
| CLR01_RS25370 (CLR01_25530) | 2719..3839 | + | 1121 | WP_089046468.1 | IS3 family transposase ISSen4 | Transposase |
| CLR01_RS25375 (CLR01_25535) | 3868..4614 | + | 747 | Protein_4 | IS5 family transposase IS5D | Transposase |
| CLR01_RS25380 (CLR01_25540) | 4776..6098 | + | 1323 | WP_016479957.1 | GntP family transporter | - |
| CLR01_RS25385 (CLR01_25545) | 6297..7088 | - | 792 | WP_008322208.1 | site-specific integrase | - |
| CLR01_RS25390 (CLR01_25550) | 7078..7392 | - | 315 | WP_008322211.1 | hypothetical protein | - |
| CLR01_RS25395 (CLR01_25555) | 7394..7699 | - | 306 | WP_008322213.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| CLR01_RS25400 (CLR01_25560) | 7701..7919 | - | 219 | WP_032934863.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| CLR01_RS25405 (CLR01_25565) | 8781..9478 | - | 698 | Protein_10 | IS1-like element IS1B family transposase | - |
| CLR01_RS25410 (CLR01_25570) | 9691..12273 | + | 2583 | WP_016479955.1 | putative signaling protein | VF |
| CLR01_RS25415 (CLR01_25575) | 12307..13011 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| CLR01_RS25420 (CLR01_25580) | 13819..14516 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| CLR01_RS25425 (CLR01_25585) | 14532..14735 | + | 204 | Protein_14 | MerR family transcriptional regulator | - |
| CLR01_RS25430 (CLR01_25590) | 15030..16274 | - | 1245 | WP_016479953.1 | hypothetical protein | VF |
| CLR01_RS25435 (CLR01_25595) | 16364..18367 | - | 2004 | WP_016479952.1 | hypothetical protein | VF |
| CLR01_RS25445 (CLR01_25605) | 19560..20858 | - | 1299 | WP_157803377.1 | accessory Sec system protein Asp2 | - |
| CLR01_RS25450 (CLR01_25610) | 20880..21911 | + | 1032 | WP_001752311.1 | IS630 family transposase ISEc33 | Transposase |
| CLR01_RS25455 (CLR01_25615) | 22124..23488 | - | 1365 | WP_124046787.1 | hypothetical protein | - |
| CLR01_RS25460 (CLR01_25620) | 23596..24564 | - | 969 | WP_000654811.1 | IS5 family transposase IS903B | Transposase |
| CLR01_RS25465 (CLR01_25625) | 24625..25257 | - | 633 | WP_016479950.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| CLR01_RS25470 (CLR01_25630) | 25620..26825 | + | 1206 | WP_015493083.1 | Plasmid partition protein A | VF |
| CLR01_RS25475 (CLR01_25635) | 26822..27793 | + | 972 | WP_016479949.1 | ParB family protein | - |
| CLR01_RS25480 (CLR01_25645) | 27929..29200 | - | 1272 | WP_015493081.1 | Y-family DNA polymerase | - |
| CLR01_RS25485 (CLR01_25650) | 29200..29622 | - | 423 | WP_015493080.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| CLR01_RS25490 (CLR01_25655) | 29682..30902 | - | 1221 | WP_000343760.1 | ISL3 family transposase ISKox3 | Transposase |
| CLR01_RS25495 (CLR01_25660) | 31126..31797 | - | 672 | WP_015493079.1 | SOS response-associated peptidase family protein | - |
| CLR01_RS25500 (CLR01_25665) | 32156..32833 | + | 678 | WP_002211749.1 | DNA methylase | - |
| CLR01_RS25505 (CLR01_25670) | 32833..33054 | + | 222 | WP_015493077.1 | hypothetical protein | - |
| CLR01_RS25510 (CLR01_25675) | 33065..33484 | + | 420 | WP_016479994.1 | DUF1380 family protein | - |
| CLR01_RS25515 (CLR01_25680) | 33538..34317 | + | 780 | WP_015493075.1 | hypothetical protein | - |
| CLR01_RS25520 (CLR01_25685) | 34722..35228 | + | 507 | WP_015493074.1 | antirestriction protein ArdA | - |
| CLR01_RS25525 (CLR01_25690) | 35271..35462 | + | 192 | WP_015493073.1 | hypothetical protein | - |
| CLR01_RS25530 (CLR01_25695) | 35655..35909 | + | 255 | WP_015493072.1 | DNA polymerase III subunit theta | - |
| CLR01_RS25535 (CLR01_25700) | 35944..36261 | + | 318 | Protein_36 | hypothetical protein | - |
| CLR01_RS25540 | 36532..36602 | - | 71 | Protein_37 | hypothetical protein | - |
| CLR01_RS25545 (CLR01_25705) | 36887..37117 | + | 231 | WP_015493071.1 | DUF905 domain-containing protein | - |
| CLR01_RS25550 (CLR01_25710) | 37188..39197 | + | 2010 | WP_016479992.1 | ParB/RepB/Spo0J family partition protein | - |
| CLR01_RS25555 (CLR01_25715) | 39240..39671 | + | 432 | WP_008324186.1 | conjugation system SOS inhibitor PsiB | - |
| CLR01_RS25560 (CLR01_25720) | 39668..40396 | + | 729 | WP_008324185.1 | plasmid SOS inhibition protein A | - |
| CLR01_RS25565 (CLR01_25725) | 40393..40716 | + | 324 | WP_008324183.1 | hypothetical protein | - |
| CLR01_RS25570 (CLR01_25730) | 40778..41137 | + | 360 | WP_015493069.1 | hypothetical protein | - |
| CLR01_RS25575 (CLR01_25735) | 41764..42138 | + | 375 | WP_008324180.1 | hypothetical protein | - |
| CLR01_RS25580 (CLR01_25740) | 42192..42479 | + | 288 | WP_008324178.1 | hypothetical protein | - |
| CLR01_RS25585 (CLR01_25745) | 42526..42870 | + | 345 | WP_008324177.1 | hypothetical protein | - |
| CLR01_RS25590 (CLR01_25750) | 42956..43219 | + | 264 | WP_008324174.1 | hypothetical protein | - |
| CLR01_RS25595 (CLR01_25755) | 43262..44092 | + | 831 | WP_008324171.1 | N-6 DNA methylase | - |
| CLR01_RS25600 (CLR01_25760) | 44719..45249 | + | 531 | WP_008324170.1 | antirestriction protein | - |
| CLR01_RS25605 (CLR01_25765) | 45296..45772 | - | 477 | WP_008324168.1 | hypothetical protein | VF |
| CLR01_RS25610 (CLR01_25770) | 46204..46596 | + | 393 | WP_008324167.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| CLR01_RS25615 (CLR01_25775) | 46785..47474 | + | 690 | WP_008324166.1 | hypothetical protein | - |
| CLR01_RS25620 (CLR01_25780) | 47561..47785 | + | 225 | WP_008324165.1 | TraY domain-containing protein | - |
| CLR01_RS25625 (CLR01_25785) | 47843..48193 | + | 351 | WP_016247536.1 | type IV conjugative transfer system pilin TraA | - |
| CLR01_RS25630 (CLR01_25790) | 48344..48649 | + | 306 | WP_016479987.1 | type IV conjugative transfer system protein TraL | - |
| CLR01_RS25635 (CLR01_25795) | 48664..49230 | + | 567 | WP_016247535.1 | type IV conjugative transfer system protein TraE | - |
| CLR01_RS25640 (CLR01_25800) | 49217..49960 | + | 744 | WP_008324157.1 | type-F conjugative transfer system secretin TraK | - |
| CLR01_RS25645 (CLR01_25805) | 49947..51341 | + | 1395 | WP_016479986.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| CLR01_RS25650 (CLR01_25810) | 51363..51902 | + | 540 | WP_016247533.1 | type IV conjugative transfer system lipoprotein TraV | - |
| CLR01_RS25655 (CLR01_25815) | 52022..52246 | + | 225 | WP_008324141.1 | TraR/DksA C4-type zinc finger protein | - |
| CLR01_RS25660 (CLR01_25820) | 52250..52435 | + | 186 | WP_008324139.1 | hypothetical protein | - |
| CLR01_RS25665 (CLR01_25825) | 52419..52820 | + | 402 | WP_016479985.1 | hypothetical protein | - |
| CLR01_RS25670 (CLR01_25830) | 52810..53376 | + | 567 | WP_008324135.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| CLR01_RS25675 (CLR01_25835) | 53369..55999 | + | 2631 | WP_008324134.1 | type IV secretion system protein TraC | - |
| CLR01_RS25680 (CLR01_25840) | 55996..56343 | + | 348 | WP_008324133.1 | type-F conjugative transfer system protein TrbI | - |
| CLR01_RS25685 (CLR01_25845) | 56343..56990 | + | 648 | WP_008324132.1 | type-F conjugative transfer system protein TraW | - |
| CLR01_RS25690 (CLR01_25850) | 56993..57979 | + | 987 | WP_042934586.1 | conjugal transfer pilus assembly protein TraU | - |
| CLR01_RS25695 (CLR01_25855) | 57996..58625 | + | 630 | WP_008324130.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| CLR01_RS25700 (CLR01_25860) | 58622..60475 | + | 1854 | WP_016479983.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| CLR01_RS25705 (CLR01_25865) | 60507..60695 | + | 189 | WP_008324128.1 | conjugal transfer protein TrbE | - |
| CLR01_RS25710 (CLR01_25870) | 60726..61475 | + | 750 | WP_008324127.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| CLR01_RS25715 (CLR01_25875) | 61492..61740 | + | 249 | WP_016479982.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| CLR01_RS25720 (CLR01_25880) | 61730..62284 | + | 555 | WP_008324125.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| CLR01_RS25725 (CLR01_25885) | 62277..62705 | + | 429 | WP_008324122.1 | hypothetical protein | - |
| CLR01_RS25730 (CLR01_25890) | 62692..64062 | + | 1371 | WP_016247527.1 | conjugal transfer pilus assembly protein TraH | - |
| CLR01_RS25735 (CLR01_25895) | 64062..66884 | + | 2823 | WP_008324119.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| CLR01_RS25740 (CLR01_25900) | 66906..67337 | + | 432 | WP_008324118.1 | entry exclusion protein | - |
| CLR01_RS25745 | 67412..67750 | + | 339 | WP_032072912.1 | Sel1-repeat-containing protein YbeT | VF |
| CLR01_RS25750 | 67758..68087 | + | 330 | WP_223856629.1 | hypothetical protein | - |
| CLR01_RS25755 (CLR01_25910) | 68221..70476 | + | 2256 | WP_075621255.1 | type IV conjugative transfer system coupling protein TraD | - |
| CLR01_RS25760 (CLR01_25915) | 70476..75716 | + | 5241 | WP_016479978.1 | Multifunctional conjugation protein TraI | Relaxase |
| CLR01_RS25765 (CLR01_25920) | 75718..76455 | + | 738 | WP_008324912.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| CLR01_RS25770 (CLR01_25925) | 76522..77241 | + | 720 | WP_008324922.1 | fertility inhibition protein FinO | - |
| CLR01_RS25775 (CLR01_25930) | 77234..78025 | + | 792 | WP_016479977.1 | DsbA family protein | - |
| CLR01_RS25780 (CLR01_25935) | 78173..78718 | + | 546 | WP_008324931.1 | Phospholipase D | VF |
| CLR01_RS25785 (CLR01_25940) | 78870..79148 | + | 279 | WP_008324932.1 | replication regulatory protein RepA | - |
| CLR01_RS25795 (CLR01_25945) | 79367..79444 | + | 78 | WP_011201829.1 | RepA leader peptide Tap | - |
| CLR01_RS25800 (CLR01_25950) | 79437..80300 | + | 864 | WP_016247520.1 | incFII family plasmid replication initiator RepA | - |
| CLR01_RS25805 | 81159..81305 | - | 147 | WP_032072915.1 | hypothetical protein | - |
| CLR01_RS25810 (CLR01_25975) | 81444..82292 | + | 849 | WP_032072916.1 | hypothetical protein | - |
| CLR01_RS25815 (CLR01_25980) | 82352..82636 | + | 285 | WP_032072917.1 | hypothetical protein | - |
| CLR01_RS25820 (CLR01_25985) | 82725..83018 | + | 294 | WP_032072918.1 | hypothetical protein | - |
| CLR01_RS25825 (CLR01_25990) | 83033..83623 | + | 591 | WP_064762226.1 | hypothetical protein | - |
| CLR01_RS25830 (CLR01_25995) | 83650..84231 | + | 582 | WP_045265539.1 | DUF2913 family protein | - |
| CLR01_RS25835 (CLR01_26000) | 84675..85238 | - | 564 | WP_155082050.1 | hypothetical protein | - |
| CLR01_RS25840 (CLR01_26005) | 85360..85902 | - | 543 | WP_077253195.1 | restriction endonuclease | - |
| CLR01_RS25845 (CLR01_26010) | 85884..86864 | - | 981 | WP_000019445.1 | IS5 family transposase ISKpn26 | Transposase |
| CLR01_RS25850 | 87068..87223 | + | 156 | WP_000074143.1 | hypothetical protein | - |
| CLR01_RS25855 (CLR01_26015) | 87272..88264 | + | 993 | WP_001145102.1 | hypothetical protein | - |
| CLR01_RS25860 (CLR01_26020) | 88333..89208 | + | 876 | Protein_100 | IS5 family transposase ISKpn26 | Transposase |
| CLR01_RS25865 (CLR01_26025) | 89661..90473 | + | 813 | WP_004201164.1 | Metallo-beta-lactamase type 2 | ARG |
| CLR01_RS25870 (CLR01_26030) | 90477..90842 | + | 366 | WP_004201167.1 | bleomycin binding protein Ble-MBL | - |
| CLR01_RS25875 (CLR01_26035) | 90847..91485 | + | 639 | WP_004201168.1 | phosphoribosylanthranilate isomerase | - |
| CLR01_RS25880 | 91496..92053 | - | 558 | Protein_104 | twin-arginine translocation (TAT) pathway signal sequence domain protein | - |
| CLR01_RS25885 | 92153..92527 | - | 375 | Protein_105 | protein-disulfide reductase DsbD family protein | - |
| CLR01_RS25890 (CLR01_26045) | 92532..92861 | - | 330 | WP_004201171.1 | divalent-cation tolerance protein CutA | - |
| CLR01_RS25895 (CLR01_26050) | 93055..93345 | + | 291 | WP_004201172.1 | co-chaperone GroES | - |
| CLR01_RS25900 (CLR01_26055) | 93401..95041 | + | 1641 | WP_004201176.1 | 60 kDa chaperonin | VF |
| CLR01_RS25905 (CLR01_26060) | 95230..95412 | + | 183 | WP_016479964.1 | hypothetical protein | - |
| CLR01_RS25910 (CLR01_26065) | 95667..95786 | + | 120 | Protein_110 | IS30 family transposase | - |
| CLR01_RS25915 (CLR01_26070) | 95799..96545 | + | 747 | Protein_111 | IS3 family transposase ISEhe3 | Transposase |
| CLR01_RS25920 (CLR01_26075) | 96692..97672 | - | 981 | WP_000019405.1 | IS5 family transposase IS5D | Transposase |
| CLR01_RS25925 (CLR01_26080) | 97840..98370 | - | 531 | WP_016479963.1 | GNAT family N-acetyltransferase | - |
| CLR01_RS25930 (CLR01_26085) | 98374..98643 | - | 270 | WP_022652312.1 | DUF1778 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|