MGE detailed information
MGE type: Prophage MGE length: 39969 bp
Accession: NZ_CP043542 Location: 2358637..2398605 Organism: Escherichia coli strain F2_81 Replicon: chromosome
Accession: NZ_CP043542 Location: 2358637..2398605 Organism: Escherichia coli strain F2_81 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CPH39_RS11375 (2354185) | 2354185..2354802 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| CPH39_RS11380 (2354813) | 2354813..2357235 | - | 2423 | Protein_2233 | dimethyl sulfoxide reductase subunit A | - |
| CPH39_RS11385 (2357296) | 2357296..2358330 | - | 1035 | Protein_2234 | molybdopterin-dependent oxidoreductase | - |
| CPH39_RS11390 (2358637) | 2358637..2359134 | + | 498 | WP_244574023.1 | hypothetical protein | - |
| CPH39_RS11395 (2359186) | 2359186..2360399 | + | 1214 | WP_162830753.1 | IS3 family transposase IS629 | Transposase |
| CPH39_RS11400 (2360773) | 2360773..2361141 | + | 369 | WP_000113585.1 | hypothetical protein | - |
| CPH39_RS11410 (2362866) | 2362866..2363255 | + | 390 | WP_000153249.1 | hypothetical protein | - |
| CPH39_RS11415 (2363257) | 2363257..2363565 | + | 309 | WP_244574047.1 | hypothetical protein | - |
| CPH39_RS11420 (2363856) | 2363856..2364341 | + | 486 | WP_048239817.1 | hypothetical protein | - |
| CPH39_RS26530 (2364344) | 2364344..2364523 | + | 180 | WP_048239818.1 | hypothetical protein | - |
| CPH39_RS11425 (2364644) | 2364644..2365135 | + | 492 | WP_096220731.1 | hypothetical protein | - |
| CPH39_RS11430 (2365208) | 2365208..2366197 | + | 990 | WP_176477229.1 | hypothetical protein | - |
| CPH39_RS11435 (2366740) | 2366740..2368152 | - | 1413 | Protein_2245 | molybdopterin-dependent oxidoreductase | - |
| CPH39_RS11440 (2368351) | 2368351..2368656 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| CPH39_RS11445 (2368764) | 2368764..2368949 | + | 186 | Protein_2247 | YnfC family lipoprotein | - |
| CPH39_RS11450 (2369004) | 2369004..2370217 | + | 1214 | WP_181389319.1 | IS3 family transposase IS629 | Transposase |
| CPH39_RS11455 (2370257) | 2370257..2370787 | + | 531 | Protein_2249 | YnfC family lipoprotein | - |
| CPH39_RS11460 (2370790) | 2370790..2371350 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| CPH39_RS11465 (2371385) | 2371385..2371726 | - | 342 | WP_000705197.1 | DUF1283 family protein | - |
| CPH39_RS11470 (2371861) | 2371861..2372187 | + | 327 | WP_001304355.1 | YnfA family protein | - |
| CPH39_RS11475 (2372393) | 2372393..2373607 | + | 1215 | WP_001460976.1 | starvation-sensing protein RspA | - |
| CPH39_RS11480 (2373619) | 2373619..2374638 | + | 1020 | WP_053883380.1 | Zn-dependent oxidoreductase | - |
| CPH39_RS11485 (2374826) | 2374826..2376106 | - | 1281 | WP_000876986.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| CPH39_RS11490 (2376141) | 2376141..2376392 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| CPH39_RS11495 (2376465) | 2376465..2377796 | - | 1332 | Protein_2257 | 3'-5' exoribonuclease | - |
| CPH39_RS11500 (2377833) | 2377833..2378075 | + | 243 | Protein_2258 | DUF977 family protein | - |
| CPH39_RS11505 (2378072) | 2378072..2378561 | + | 490 | Protein_2259 | class I SAM-dependent methyltransferase | - |
| CPH39_RS11510 (2379039) | 2379039..2379460 | + | 422 | Protein_2260 | hypothetical protein | - |
| CPH39_RS26535 (2380095) | 2380095..2380466 | + | 372 | WP_001406656.1 | ISNCY family transposase ISRel10 | Transposase |
| CPH39_RS26540 (2380504) | 2380504..2381166 | + | 663 | Protein_2262 | ISNCY family transposase ISCARN112 | Transposase |
| CPH39_RS26545 (2381287) | 2381287..2381436 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| CPH39_RS11520 (2381873) | 2381873..2382205 | - | 333 | WP_001349760.1 | FlxA-like family protein | - |
| CPH39_RS11525 (2382408) | 2382408..2382713 | - | 306 | WP_001326990.1 | protein YdfV | - |
| CPH39_RS11530 (2382738) | 2382738..2382977 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| CPH39_RS11535 (2382977) | 2382977..2383264 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| CPH39_RS11540 (2383336) | 2383336..2383491 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| CPH39_RS11545 (2383708) | 2383708..2383959 | + | 252 | WP_000980994.1 | protein Rem | - |
| CPH39_RS11550 (2384026) | 2384026..2384304 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| CPH39_RS11555 (2384306) | 2384306..2385355 | + | 1050 | WP_087892834.1 | DUF968 domain-containing protein | - |
| CPH39_RS11560 (2385369) | 2385369..2386121 | + | 753 | WP_001047133.1 | antitermination protein | - |
| CPH39_RS11565 (2386296) | 2386296..2386498 | - | 203 | Protein_2273 | cold shock-like protein CspF | - |
| CPH39_RS11570 (2386797) | 2386797..2387012 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| CPH39_RS11575 (2387376) | 2387376..2387546 | - | 171 | WP_001405948.1 | putative zinc-binding protein YnfU | - |
| CPH39_RS11580 (2387767) | 2387767..2387982 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| CPH39_RS26550 (2387987) | 2387987..2388322 | + | 336 | Protein_2277 | YdfR family protein | - |
| CPH39_RS11590 (2388486) | 2388486..2388746 | - | 261 | WP_001306174.1 | hypothetical protein | - |
| CPH39_RS11595 (2388860) | 2388860..2389395 | + | 536 | Protein_2279 | lysozyme | - |
| CPH39_RS11600 (2389392) | 2389392..2389889 | + | 498 | WP_001071776.1 | DUF2514 domain-containing protein | - |
| CPH39_RS11605 (2390253) | 2390253..2390465 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| CPH39_RS11610 (2390476) | 2390476..2390664 | + | 189 | WP_071526745.1 | cold-shock protein | - |
| CPH39_RS26555 (2390667) | 2390667..2390705 | + | 39 | WP_223367339.1 | hypothetical protein | - |
| CPH39_RS11615 (2390812) | 2390812..2390967 | + | 156 | WP_001443523.1 | hypothetical protein | - |
| CPH39_RS11620 (2391140) | 2391140..2391313 | + | 174 | WP_001019207.1 | addiction module toxin, GnsA/GnsB family | - |
| CPH39_RS11625 (2391609) | 2391609..2391815 | + | 207 | WP_096220638.1 | hypothetical protein | - |
| CPH39_RS11630 (2392066) | 2392066..2392260 | - | 195 | WP_032145128.1 | YlcI/YnfO family protein | - |
| CPH39_RS11635 (2392649) | 2392649..2393194 | + | 546 | WP_000453558.1 | DNA-packaging protein | - |
| CPH39_RS11640 (2393169) | 2393169..2394722 | + | 1554 | WP_259394524.1 | phage terminase large subunit family protein | - |
| CPH39_RS11650 (2394722) | 2394722..2395297 | + | 576 | WP_220541906.1 | tail fiber assembly protein | - |
| CPH39_RS11655 (2395395) | 2395395..2395985 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| CPH39_RS11660 (2396302) | 2396302..2396535 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| CPH39_RS11665 (2396604) | 2396604..2396717 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| CPH39_RS11670 (2397322) | 2397322..2398605 | + | 1284 | Protein_2294 | MHS family MFS transporter YdfJ | - |
| CPH39_RS11675 (2398695) | 2398695..2400155 | + | 1461 | WP_096220633.1 | mannitol dehydrogenase family protein | - |
| CPH39_RS11680 (2400191) | 2400191..2400394 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| CPH39_RS11685 (2400571) | 2400571..2401257 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| CPH39_RS11690 (2401346) | 2401346..2402092 | - | 747 | WP_000636575.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|