MGE detailed information
MGE type: Prophage MGE length: 51035 bp
Accession: NZ_CP042298 Location: 1373030..1424064 Organism: Escherichia coli strain RM9088 Replicon: chromosome
Accession: NZ_CP042298 Location: 1373030..1424064 Organism: Escherichia coli strain RM9088 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FRV13_RS08175 () | 1368895..1369191 | - | 297 | WP_000967595.1 | YciI family protein | - |
| FRV13_RS08180 () | 1369415..1370134 | + | 720 | WP_001300409.1 | TonB system transport protein TonB | - |
| FRV13_RS08185 () | 1370174..1370572 | - | 399 | WP_000108160.1 | acyl-CoA thioester hydrolase YciA | - |
| FRV13_RS08190 () | 1370677..1371216 | - | 540 | WP_000808667.1 | septation protein A | - |
| FRV13_RS08195 () | 1371246..1371989 | - | 744 | WP_000028540.1 | envelope biogenesis factor ElyC | - |
| FRV13_RS08200 () | 1372017..1372106 | - | 90 | Protein_1278 | YkgJ family cysteine cluster protein | - |
| FRV13_RS08205 () | 1372346..1372984 | + | 639 | WP_000737224.1 | outer membrane protein OmpW | - |
| FRV13_RS08210 () | 1373030..1374160 | - | 1131 | WP_042970836.1 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) ; Integrase | Integrase |
| FRV13_RS08215 () | 1374138..1374386 | - | 249 | WP_000113182.1 | excisionase | - |
| FRV13_RS08220 () | 1374451..1376922 | - | 2472 | WP_042970837.1 | exonuclease | - |
| FRV13_RS08225 () | 1377003..1377206 | - | 204 | WP_001098749.1 | DUF1482 family protein | - |
| FRV13_RS08230 () | 1377209..1377391 | - | 183 | WP_000449182.1 | cell division inhibition protein DicB | - |
| FRV13_RS08235 () | 1377961..1378449 | + | 489 | WP_123059909.1 | hypothetical protein | - |
| FRV13_RS08240 () | 1378576..1378785 | + | 210 | WP_047087134.1 | hypothetical protein | - |
| FRV13_RS08245 () | 1378786..1379424 | - | 639 | WP_047087133.1 | hypothetical protein | - |
| FRV13_RS08250 () | 1379566..1379721 | - | 156 | WP_047087132.1 | DUF1391 family protein | - |
| FRV13_RS08255 () | 1379996..1380283 | - | 288 | WP_047087131.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| FRV13_RS08260 () | 1380283..1380474 | - | 192 | WP_000108763.1 | hypothetical protein | Antitoxin Detail |
| FRV13_RS08265 () | 1380503..1380901 | - | 399 | WP_047087139.1 | helix-turn-helix domain-containing protein | - |
| FRV13_RS08270 () | 1381008..1381280 | + | 273 | WP_047087130.1 | transcriptional regulator | - |
| FRV13_RS08275 () | 1381264..1381689 | + | 426 | WP_042966237.1 | Rha family transcriptional regulator | - |
| FRV13_RS08280 () | 1381761..1382795 | + | 1035 | WP_137578463.1 | phage replisome organizer | - |
| FRV13_RS08285 () | 1382707..1383249 | + | 543 | WP_187270338.1 | replication protein | - |
| FRV13_RS08290 () | 1383284..1384054 | + | 771 | Protein_1296 | DUF1627 domain-containing protein | - |
| FRV13_RS08295 () | 1384070..1384492 | + | 423 | WP_040072802.1 | DUF977 family protein | - |
| FRV13_RS08300 () | 1384550..1384906 | + | 357 | WP_040072812.1 | hypothetical protein | - |
| FRV13_RS08305 () | 1385006..1385703 | + | 698 | Protein_1299 | IS1 family transposase IS1R | Transposase |
| FRV13_RS08310 () | 1385734..1385946 | + | 213 | WP_040072799.1 | hypothetical protein | - |
| FRV13_RS08315 () | 1385979..1386197 | + | 219 | WP_042973577.1 | DUF4014 family protein | - |
| FRV13_RS08320 () | 1386199..1386564 | + | 366 | WP_148050578.1 | HNH endonuclease | - |
| FRV13_RS08325 () | 1386672..1386912 | + | 241 | Protein_1303 | hypothetical protein | - |
| FRV13_RS28255 () | 1386906..1386992 | + | 87 | Protein_1304 | DUF551 domain-containing protein | - |
| FRV13_RS08330 () | 1387117..1387416 | - | 300 | WP_000220601.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| FRV13_RS08335 () | 1387422..1387679 | - | 258 | WP_001260977.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| FRV13_RS08340 () | 1387815..1388087 | + | 273 | WP_042966805.1 | hypothetical protein | - |
| FRV13_RS08345 () | 1388089..1389138 | + | 1050 | WP_042970853.1 | DUF968 domain-containing protein | - |
| FRV13_RS08350 () | 1389151..1389510 | + | 360 | WP_042966802.1 | RusA family crossover junction endodeoxyribonuclease | - |
| FRV13_RS08355 () | 1389519..1390061 | + | 543 | WP_042966801.1 | DUF1133 family protein | - |
| FRV13_RS08360 () | 1390376..1390573 | + | 198 | WP_000917767.1 | hypothetical protein | - |
| FRV13_RS08365 () | 1390698..1391411 | + | 714 | WP_105268780.1 | helix-turn-helix domain-containing protein | - |
| FRV13_RS08390 () | 1392081..1392494 | + | 414 | WP_042966800.1 | subtilase | - |
| FRV13_RS08395 () | 1392543..1393577 | + | 1035 | WP_042966798.1 | S8/S53 family peptidase | - |
| FRV13_RS08400 () | 1393598..1394008 | + | 411 | WP_072034662.1 | subtilase cytotoxin subunit B | - |
| FRV13_RS08405 () | 1394344..1394736 | + | 393 | WP_042966797.1 | holin | - |
| FRV13_RS08410 () | 1394726..1395001 | + | 276 | WP_042966796.1 | phage holin family protein | - |
| FRV13_RS08415 () | 1395004..1395381 | + | 378 | WP_042966794.1 | M15 family metallopeptidase | - |
| FRV13_RS08420 () | 1395452..1395733 | + | 282 | WP_000271099.1 | hypothetical protein | - |
| FRV13_RS08425 () | 1396132..1396473 | + | 342 | WP_042966175.1 | hypothetical protein | - |
| FRV13_RS08430 () | 1396612..1396908 | + | 297 | WP_042966177.1 | hypothetical protein | - |
| FRV13_RS08435 () | 1397235..1397537 | + | 303 | WP_148050579.1 | hypothetical protein | - |
| FRV13_RS08440 () | 1397908..1398144 | + | 237 | WP_064756635.1 | hypothetical protein | - |
| FRV13_RS08445 () | 1398192..1398740 | + | 549 | WP_032083611.1 | terminase small subunit | - |
| FRV13_RS08450 () | 1398712..1400628 | + | 1917 | WP_047085271.1 | phage terminase large subunit family protein | - |
| FRV13_RS08455 () | 1400632..1400841 | + | 210 | WP_000263126.1 | gpW family protein | - |
| FRV13_RS08460 () | 1400886..1402409 | + | 1524 | WP_137486528.1 | phage portal protein | - |
| FRV13_RS08465 () | 1402399..1404015 | + | 1617 | WP_148050580.1 | S49 family peptidase | - |
| FRV13_RS08470 () | 1404054..1404389 | + | 336 | WP_148050581.1 | head decoration protein | - |
| FRV13_RS08475 () | 1404459..1405487 | + | 1029 | WP_047085268.1 | major capsid protein | - |
| FRV13_RS08480 () | 1405538..1405903 | + | 366 | WP_047085267.1 | DNA breaking-rejoining protein | - |
| FRV13_RS08485 () | 1405906..1406307 | + | 402 | WP_042966186.1 | hypothetical protein | - |
| FRV13_RS08490 () | 1406288..1407010 | + | 723 | WP_047085266.1 | hypothetical protein | - |
| FRV13_RS08495 () | 1407022..1407573 | + | 552 | WP_042966191.1 | hypothetical protein | - |
| FRV13_RS08500 () | 1407557..1408180 | + | 624 | WP_047085265.1 | phage baseplate assembly protein V | - |
| FRV13_RS08505 () | 1408214..1408570 | + | 357 | WP_040091455.1 | GPW/gp25 family protein | - |
| FRV13_RS08510 () | 1408545..1409459 | + | 915 | WP_047085264.1 | baseplate J/gp47 family protein | - |
| FRV13_RS08515 () | 1409452..1410042 | + | 591 | WP_040091453.1 | phage tail protein I | - |
| FRV13_RS08520 () | 1410039..1411364 | + | 1326 | WP_148050582.1 | phage tail protein | - |
| FRV13_RS08525 () | 1411391..1411918 | + | 528 | WP_040091481.1 | tail fiber assembly protein | - |
| FRV13_RS08530 () | 1411973..1413448 | + | 1476 | WP_040091452.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| FRV13_RS08535 () | 1413445..1413963 | + | 519 | WP_000988219.1 | phage major tail tube protein | - |
| FRV13_RS08540 () | 1414023..1414325 | + | 303 | WP_001291421.1 | phage tail assembly protein | - |
| FRV13_RS28260 () | 1414325..1414462 | + | 138 | WP_157839838.1 | hypothetical protein | - |
| FRV13_RS08545 () | 1414443..1416095 | + | 1653 | WP_047085580.1 | hypothetical protein | - |
| FRV13_RS08550 () | 1416098..1416586 | + | 489 | WP_042966833.1 | phage tail protein | - |
| FRV13_RS08555 () | 1416561..1416779 | + | 219 | WP_042966832.1 | tail protein X | - |
| FRV13_RS08560 () | 1416770..1417858 | + | 1089 | WP_040091448.1 | phage late control protein | - |
| FRV13_RS08565 () | 1417883..1418539 | + | 657 | Protein_1349 | prophage tail fiber N-terminal domain-containing protein | - |
| FRV13_RS08570 () | 1418803..1419390 | + | 588 | Protein_1350 | phage tail protein | - |
| FRV13_RS08575 () | 1419420..1420991 | - | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| FRV13_RS08580 () | 1421011..1421358 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| FRV13_RS08585 () | 1421358..1422035 | - | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| FRV13_RS08590 () | 1422098..1422862 | + | 765 | WP_148050583.1 | hypothetical protein | - |
| FRV13_RS08595 () | 1422877..1423464 | + | 588 | WP_148050584.1 | DUF4376 domain-containing protein | - |
| FRV13_RS08600 () | 1423501..1424196 | - | 696 | Protein_1356 | ORF6N domain-containing protein | - |
| FRV13_RS08605 () | 1424523..1424651 | + | 129 | Protein_1357 | outer membrane protein OmpW | - |
| FRV13_RS08610 () | 1424711..1425217 | - | 507 | WP_001079505.1 | ferritin-like domain-containing protein | - |
| FRV13_RS08615 () | 1425263..1425763 | - | 501 | WP_001056490.1 | ferritin-like domain-containing protein | - |
| FRV13_RS08620 () | 1425849..1426028 | - | 180 | WP_000807651.1 | general stress protein | - |
| FRV13_RS08625 () | 1426409..1427215 | - | 807 | WP_000443067.1 | tryptophan synthase subunit alpha | - |
| FRV13_RS08630 () | 1427215..1428408 | - | 1194 | WP_000209520.1 | tryptophan synthase subunit beta | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|