MGE detailed information
MGE type: Conjugative plasmid MGE length: 86529 bp
Accession: NZ_CP042297 Location: 1..86529 Organism: Escherichia coli strain RM9088 Replicon: plasmid p2RM9088
Accession: NZ_CP042297 Location: 1..86529 Organism: Escherichia coli strain RM9088 Replicon: plasmid p2RM9088
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FRV13_RS01000 () | 48..482 | - | 435 | WP_042967004.1 | DUF1380 family protein | - |
| FRV13_RS01005 () | 494..712 | - | 219 | WP_042967012.1 | hypothetical protein | - |
| FRV13_RS01010 () | 712..1395 | - | 684 | WP_042967003.1 | DNA methylase | - |
| FRV13_RS28165 () | 1471..1775 | - | 305 | Protein_4 | hypothetical protein | - |
| FRV13_RS01015 () | 1779..2681 | - | 903 | WP_077781756.1 | DUF1281 domain-containing protein | - |
| FRV13_RS01025 () | 3099..3347 | + | 249 | WP_042967000.1 | DinI-like family protein | - |
| FRV13_RS01030 () | 3344..3781 | + | 438 | WP_042966998.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| FRV13_RS01035 () | 3781..5052 | + | 1272 | WP_148050549.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| FRV13_RS01040 () | 5248..5874 | + | 627 | WP_000587689.1 | ParA family plasmid-partitioning AAA ATPase | - |
| FRV13_RS28170 () | 5871..6173 | + | 303 | WP_001245884.1 | hypothetical protein | - |
| FRV13_RS01055 () | 6317..6994 | + | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| FRV13_RS01060 () | 6994..7341 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| FRV13_RS01065 () | 7361..8932 | + | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| FRV13_RS01070 () | 9624..10553 | + | 930 | WP_000102288.1 | hypothetical protein | - |
| FRV13_RS01075 () | 11003..11437 | + | 435 | Protein_15 | IS3 family transposase IS629 | Transposase |
| FRV13_RS28175 () | 11477..11665 | - | 189 | WP_001488592.1 | hypothetical protein | - |
| FRV13_RS01090 () | 11866..13437 | - | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| FRV13_RS01095 () | 13457..13804 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| FRV13_RS01100 () | 13804..14481 | - | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| FRV13_RS01110 () | 14481..15023 | - | 543 | WP_148050559.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| FRV13_RS01115 () | 15460..16157 | + | 698 | Protein_21 | IS1 family transposase | - |
| FRV13_RS01120 () | 16728..17075 | + | 348 | WP_024173857.1 | hypothetical protein | - |
| FRV13_RS01130 () | 17416..18113 | - | 698 | Protein_23 | IS1 family transposase | - |
| FRV13_RS01135 () | 18243..19235 | - | 993 | WP_097463147.1 | hypothetical protein | - |
| FRV13_RS28180 () | 19284..19439 | - | 156 | WP_000074142.1 | hypothetical protein | - |
| FRV13_RS01145 () | 20048..21079 | + | 1032 | WP_096988090.1 | IS630 family transposase ISSpu2 | Transposase |
| FRV13_RS01150 () | 21128..21334 | + | 207 | WP_071961352.1 | hypothetical protein | - |
| FRV13_RS01160 () | 21841..25659 | - | 3819 | WP_042971219.1 | Temperature-sensitive hemagglutinin tsh autotransporter | VF |
| FRV13_RS01165 () | 26081..26218 | + | 138 | Protein_29 | recombinase family protein | - |
| FRV13_RS01170 () | 26237..26599 | - | 363 | Protein_30 | IS630 family transposase | - |
| FRV13_RS01175 () | 26689..27018 | + | 330 | WP_001137792.1 | IS66 family transposase ISEc49 | Transposase |
| FRV13_RS01180 () | 27005..27385 | + | 381 | WP_000957246.1 | IS66 family transposase ISEc49 | Transposase |
| FRV13_RS01185 () | 27428..29011 | + | 1584 | WP_040091524.1 | IS66 family transposase ISEc49 | Transposase |
| FRV13_RS28185 () | 29025..29168 | - | 144 | WP_000877738.1 | hypothetical protein | - |
| FRV13_RS01195 () | 29371..29511 | - | 141 | Protein_35 | IS630 family transposase | - |
| FRV13_RS01205 () | 29557..30147 | - | 591 | WP_000086537.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| FRV13_RS01215 () | 30308..33292 | + | 2985 | Protein_37 | Tn3 family transposase TnpA_ISSba14 | Transposase |
| FRV13_RS01220 () | 33289..33579 | - | 291 | WP_136759862.1 | hypothetical protein | - |
| FRV13_RS01225 () | 34632..35096 | - | 465 | WP_040090730.1 | hypothetical protein | - |
| FRV13_RS01230 () | 35375..36415 | - | 1041 | WP_137561113.1 | hypothetical protein | - |
| FRV13_RS28190 () | 36525..36713 | - | 189 | WP_169301934.1 | hypothetical protein | - |
| FRV13_RS01235 () | 37418..38440 | - | 1023 | WP_000840936.1 | replication initiation protein | - |
| FRV13_RS01240 () | 38433..38507 | - | 75 | WP_032319616.1 | RepA leader peptide Tap | - |
| FRV13_RS01250 () | 38741..38998 | - | 258 | WP_000083834.1 | replication regulatory protein RepA | - |
| FRV13_RS01260 () | 39282..39488 | - | 207 | WP_001362723.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 39475..39536 | + | 62 | NuclAT_0 | - | Antitoxin Detail |
| - () | 39475..39536 | + | 62 | NuclAT_0 | - | Antitoxin Detail |
| - () | 39475..39536 | + | 62 | NuclAT_0 | - | Antitoxin Detail |
| - () | 39475..39536 | + | 62 | NuclAT_0 | - | Antitoxin Detail |
| FRV13_RS01265 () | 39832..40143 | + | 312 | WP_000765906.1 | hypothetical protein | - |
| FRV13_RS28445 () | 40324..40398 | - | 75 | Protein_47 | endonuclease | - |
| FRV13_RS01275 () | 40459..41136 | + | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| FRV13_RS01280 () | 41136..41483 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| FRV13_RS01285 () | 41503..43074 | + | 1572 | WP_000381395.1 | IS66 family transposase ISCro1 | Transposase |
| FRV13_RS01290 () | 43353..43504 | - | 152 | Protein_51 | hypothetical protein | - |
| FRV13_RS01295 () | 43639..44040 | - | 402 | Protein_52 | fertility inhibition protein FinO | - |
| FRV13_RS01300 () | 44107..44853 | - | 747 | WP_096912997.1 | conjugal transfer pilus acetylase TraX | - |
| FRV13_RS01305 () | 44873..50143 | - | 5271 | WP_148050554.1 | Multifunctional conjugation protein TraI | Relaxase |
| FRV13_RS01310 () | 50225..50452 | + | 228 | WP_000450526.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| FRV13_RS01315 () | 50452..50850 | + | 399 | WP_042966721.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| FRV13_RS01320 () | 50859..53093 | - | 2235 | WP_148050555.1 | type IV conjugative transfer system coupling protein TraD | - |
| FRV13_RS01325 () | 53375..53854 | - | 480 | WP_001473214.1 | hypothetical protein | - |
| FRV13_RS01330 () | 54058..54789 | - | 732 | WP_028985894.1 | complement resistance protein TraT | - |
| FRV13_RS01335 () | 54821..55318 | - | 498 | WP_032211977.1 | entry exclusion protein | - |
| FRV13_RS01340 () | 55334..58177 | - | 2844 | WP_148050556.1 | conjugal transfer mating pair stabilization protein TraG | - |
| FRV13_RS01345 () | 58174..59547 | - | 1374 | WP_042966725.1 | conjugal transfer protein TraH | - |
| FRV13_RS01350 () | 59534..59959 | - | 426 | WP_071988162.1 | F-type conjugal transfer protein TrbF | - |
| FRV13_RS01355 () | 59880..60254 | - | 375 | WP_071988163.1 | P-type conjugative transfer protein TrbJ | - |
| FRV13_RS01360 () | 60184..60729 | - | 546 | WP_024212143.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| FRV13_RS01365 () | 60716..61003 | - | 288 | WP_000335419.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| FRV13_RS01370 () | 61069..61515 | - | 447 | WP_077630149.1 | hypothetical protein | - |
| FRV13_RS01375 () | 61601..61840 | - | 240 | WP_000979751.1 | hypothetical protein | - |
| FRV13_RS01380 () | 61979..62722 | - | 744 | WP_001030392.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| FRV13_RS01385 () | 62715..62972 | - | 258 | WP_000864351.1 | conjugal transfer protein TrbE | - |
| FRV13_RS01390 () | 62986..64824 | - | 1839 | WP_097603794.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| FRV13_RS01395 () | 64984..65364 | - | 381 | WP_032206670.1 | hypothetical protein | - |
| FRV13_RS01400 () | 65361..65999 | - | 639 | WP_001035184.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| FRV13_RS01405 () | 66228..66561 | - | 334 | Protein_74 | hypothetical protein | - |
| FRV13_RS01410 () | 66588..66736 | - | 149 | Protein_75 | TraU family protein | - |
| FRV13_RS01415 () | 66740..67117 | - | 378 | WP_001365598.1 | hypothetical protein | - |
| FRV13_RS01425 () | 67915..68457 | - | 543 | WP_042966717.1 | hypothetical protein | - |
| FRV13_RS01430 () | 68471..69463 | - | 993 | WP_042966716.1 | conjugal transfer pilus assembly protein TraU | - |
| FRV13_RS01435 () | 69460..70092 | - | 633 | WP_042966714.1 | type-F conjugative transfer system protein TraW | - |
| FRV13_RS01440 () | 70089..70475 | - | 387 | WP_033817130.1 | type-F conjugative transfer system protein TrbI | - |
| FRV13_RS01445 () | 70472..73099 | - | 2628 | WP_148050557.1 | type IV secretion system protein TraC | - |
| FRV13_RS01450 () | 73259..73480 | - | 222 | WP_042966711.1 | conjugal transfer protein TraR | - |
| FRV13_RS01455 () | 73615..74130 | - | 516 | WP_042966709.1 | type IV conjugative transfer system lipoprotein TraV | - |
| FRV13_RS01460 () | 74127..74378 | - | 252 | WP_042966708.1 | conjugal transfer protein TrbG | - |
| FRV13_RS01465 () | 74371..74622 | - | 252 | WP_148050558.1 | conjugal transfer protein TrbD | - |
| FRV13_RS01470 () | 74716..75413 | + | 698 | Protein_86 | IS1 family transposase | - |
| FRV13_RS01475 () | 75455..76042 | - | 588 | WP_042966706.1 | conjugal transfer protein TraP | - |
| FRV13_RS01480 () | 76032..77450 | - | 1419 | WP_042966705.1 | conjugal transfer protein TraB | - |
| FRV13_RS01485 () | 77450..78178 | - | 729 | WP_001355329.1 | type-F conjugative transfer system secretin TraK | - |
| FRV13_RS01490 () | 78165..78731 | - | 567 | WP_000399757.1 | type IV conjugative transfer system protein TraE | - |
| FRV13_RS01495 () | 78753..79064 | - | 312 | WP_000012108.1 | type IV conjugative transfer system protein TraL | - |
| FRV13_RS01500 () | 79079..79438 | - | 360 | WP_000340268.1 | type IV conjugative transfer system pilin TraA | - |
| FRV13_RS01505 () | 79472..79699 | - | 228 | WP_000589557.1 | conjugal transfer relaxosome protein TraY | - |
| FRV13_RS01510 () | 79818..80465 | - | 648 | WP_042966703.1 | transcriptional regulator TraJ family protein | - |
| FRV13_RS01515 () | 80665..81042 | - | 378 | WP_001151539.1 | relaxosome protein TraM | - |
| FRV13_RS01520 () | 81318..81965 | + | 648 | WP_000602508.1 | hypothetical protein | VF |
| FRV13_RS01525 () | 82262..83083 | - | 822 | WP_042967111.1 | DUF945 domain-containing protein | - |
| FRV13_RS28195 () | 83201..83383 | - | 183 | WP_170979925.1 | hypothetical protein | - |
| FRV13_RS01545 () | 84257..84448 | - | 192 | WP_001027494.1 | hypothetical protein | - |
| FRV13_RS01550 () | 84445..84867 | - | 423 | WP_000271681.1 | DUF1380 family protein | - |
| FRV13_RS01555 () | 84914..85216 | - | 303 | WP_072128676.1 | antirestriction protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|