MGE detailed information
MGE type: Prophage MGE length: 135693 bp
Accession: NZ_CP041513 Location: 3653912..3789604 Organism: Shigella boydii strain KCCM 41690 Replicon: chromosome
Accession: NZ_CP041513 Location: 3653912..3789604 Organism: Shigella boydii strain KCCM 41690 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FNA65_RS19585 () | 3649112..3649654 | - | 543 | WP_000682832.1 | fimbrial protein | - |
| FNA65_RS19590 () | 3649953..3650234 | - | 282 | WP_001403727.1 | DUF2574 family protein | - |
| FNA65_RS19595 () | 3650497..3651606 | - | 1110 | WP_001005448.1 | iron-sulfur cluster carrier protein ApbC | - |
| FNA65_RS19600 () | 3651738..3653771 | + | 2034 | WP_032229995.1 | methionine--tRNA ligase | - |
| FNA65_RS19605 () | 3653912..3654477 | + | 566 | Protein_3589 | WGR domain-containing protein | - |
| FNA65_RS19615 () | 3654520..3654882 | - | 363 | Protein_3590 | IS3 family transposase | - |
| FNA65_RS19620 () | 3654971..3656199 | + | 1229 | WP_088895425.1 | IS3-like element IS2 family transposase | - |
| FNA65_RS19625 () | 3656210..3657012 | - | 803 | Protein_3592 | IS3-like element IS600 family transposase | - |
| FNA65_RS19630 () | 3657136..3657833 | + | 698 | Protein_3593 | IS1 family transposase | - |
| FNA65_RS19635 () | 3657851..3658123 | + | 273 | Protein_3594 | DUF1307 domain-containing protein | - |
| FNA65_RS19640 () | 3658164..3658634 | - | 471 | WP_001295430.1 | DUF1456 family protein | - |
| FNA65_RS19645 () | 3658681..3659400 | - | 720 | WP_000598643.1 | two-component system response regulator BtsR | - |
| FNA65_RS19650 () | 3659397..3661082 | - | 1686 | WP_012421574.1 | two-component regulatory system sensor histidine kinase BtsS | - |
| FNA65_RS19655 () | 3661304..3661369 | + | 66 | Protein_3598 | MerR family DNA-binding transcriptional regulator | - |
| FNA65_RS19660 () | 3661608..3662305 | - | 698 | Protein_3599 | IS1 family transposase | - |
| FNA65_RS19665 () | 3662374..3662622 | + | 249 | WP_001261938.1 | DinI-like family protein | - |
| FNA65_RS19670 () | 3662726..3662854 | - | 129 | Protein_3601 | helix-turn-helix domain-containing protein | - |
| FNA65_RS19675 () | 3662939..3663484 | + | 546 | WP_001026780.1 | serine acetyltransferase | - |
| FNA65_RS19680 () | 3663495..3664067 | - | 573 | WP_039059150.1 | tail fiber assembly protein | - |
| FNA65_RS19685 () | 3664067..3665392 | - | 1326 | WP_073692955.1 | phage tail protein | - |
| FNA65_RS19690 () | 3665434..3666131 | + | 698 | Protein_3605 | IS1 family transposase | - |
| FNA65_RS19695 () | 3666146..3668014 | - | 1869 | Protein_3606 | prophage tail fiber N-terminal domain-containing protein | - |
| FNA65_RS19700 () | 3668166..3668765 | - | 600 | WP_001228313.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| FNA65_RS19705 () | 3668833..3672306 | - | 3474 | WP_134797164.1 | host specificity protein J | - |
| FNA65_RS19710 () | 3672648..3673319 | - | 672 | WP_094096751.1 | tail assembly protein | - |
| FNA65_RS19715 () | 3673273..3673878 | - | 606 | Protein_3610 | phage tail protein | - |
| FNA65_RS19720 () | 3673889..3674587 | - | 699 | WP_024260951.1 | phage minor tail protein L | - |
| FNA65_RS19725 () | 3674587..3674916 | - | 330 | WP_000847315.1 | phage tail protein | - |
| FNA65_RS19730 () | 3674913..3677524 | - | 2612 | Protein_3613 | phage tail tape measure protein | - |
| FNA65_RS19735 () | 3677505..3677918 | - | 414 | WP_000533443.1 | phage tail assembly protein T | - |
| FNA65_RS19740 () | 3677941..3678336 | - | 396 | Protein_3615 | phage minor tail protein G | - |
| FNA65_RS19745 () | 3678350..3679102 | - | 753 | WP_039059160.1 | phage tail protein | - |
| FNA65_RS19750 () | 3679110..3679505 | - | 396 | WP_000683079.1 | phage minor tail U family protein | - |
| FNA65_RS19755 () | 3679502..3680077 | - | 576 | WP_000975010.1 | phage tail protein | - |
| FNA65_RS19760 () | 3680093..3680446 | - | 354 | WP_001204570.1 | tail attachment protein | - |
| FNA65_RS19765 () | 3680439..3680822 | - | 384 | WP_000201502.1 | hypothetical protein | - |
| FNA65_RS19770 () | 3680874..3681901 | - | 1028 | Protein_3621 | major capsid protein | - |
| FNA65_RS19775 () | 3681959..3682306 | - | 348 | WP_000256820.1 | head decoration protein | - |
| FNA65_RS19780 () | 3682343..3683848 | - | 1506 | WP_073692874.1 | S49 family peptidase | - |
| FNA65_RS19785 () | 3683838..3684620 | - | 783 | Protein_3624 | phage portal protein | - |
| FNA65_RS19795 () | 3685414..3685695 | - | 282 | WP_000140265.1 | hypothetical protein | - |
| FNA65_RS19820 () | 3687132..3687401 | + | 270 | WP_001289722.1 | DUF826 domain-containing protein | - |
| FNA65_RS19830 () | 3687605..3688024 | + | 420 | WP_000435414.1 | IS66 family insertion sequence hypothetical protein | - |
| FNA65_RS19835 () | 3688021..3688371 | + | 351 | WP_000623347.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| FNA65_RS19840 () | 3688402..3689994 | + | 1593 | WP_001072381.1 | IS66 family transposase | - |
| FNA65_RS19845 () | 3690042..3690185 | + | 144 | WP_039059163.1 | lysis protein | - |
| FNA65_RS19850 () | 3690160..3691106 | - | 947 | Protein_3632 | IS3 family transposase | - |
| FNA65_RS19855 () | 3691162..3691859 | + | 698 | Protein_3633 | IS1 family transposase | - |
| FNA65_RS19860 () | 3692043..3692693 | - | 651 | WP_001007759.1 | metal-binding protein ZinT | - |
| FNA65_RS19865 () | 3692950..3693585 | - | 636 | WP_001240105.1 | protein-methionine-sulfoxide reductase heme-binding subunit MsrQ | - |
| FNA65_RS19870 () | 3693586..3694590 | - | 1005 | WP_000740100.1 | protein-methionine-sulfoxide reductase catalytic subunit MsrP | - |
| FNA65_RS19875 () | 3694699..3695112 | - | 414 | WP_000920122.1 | hydroxyisourate hydrolase | - |
| FNA65_RS19880 () | 3695245..3695916 | + | 672 | WP_134797182.1 | response regulator transcription factor HprR | - |
| FNA65_RS19885 () | 3695916..3697274 | + | 1359 | WP_000826763.1 | two-component system sensor histidine kinase HprS | - |
| FNA65_RS19890 () | 3697382..3698233 | - | 852 | WP_000218214.1 | protein deglycase HchA | - |
| FNA65_RS19895 () | 3698380..3698748 | + | 369 | WP_153449117.1 | hypothetical protein | - |
| FNA65_RS19900 () | 3698795..3699492 | - | 698 | Protein_3642 | IS1 family transposase | - |
| FNA65_RS19905 () | 3699602..3700099 | - | 498 | WP_000020956.1 | porin | - |
| FNA65_RS19910 () | 3700193..3701421 | + | 1229 | WP_167549338.1 | IS3-like element IS2 family transposase | - |
| FNA65_RS19915 () | 3701436..3702011 | - | 576 | Protein_3645 | porin | - |
| FNA65_RS19920 () | 3702578..3702943 | + | 366 | WP_073692924.1 | permease | - |
| FNA65_RS19925 () | 3702983..3703678 | + | 696 | WP_000365568.1 | phosphohydrolase | - |
| FNA65_RS19930 () | 3703745..3705163 | + | 1419 | WP_001157236.1 | DNA-cytosine methyltransferase | - |
| FNA65_RS19935 () | 3705144..3705614 | + | 471 | WP_000786008.1 | VSPR family DNA mismatch endonuclease | - |
| FNA65_RS19940 () | 3705603..3706522 | - | 920 | Protein_3650 | drug/metabolite exporter YedA | - |
| FNA65_RS19945 () | 3706668..3707364 | - | 697 | Protein_3651 | IS1 family transposase | - |
| FNA65_RS19950 () | 3707398..3707754 | - | 357 | WP_005113720.1 | hypothetical protein | - |
| FNA65_RS19955 () | 3707820..3708164 | - | 345 | WP_039059167.1 | DUF3168 domain-containing protein | - |
| FNA65_RS19960 () | 3708161..3708607 | - | 447 | WP_000569978.1 | HK97 gp10 family phage protein | - |
| FNA65_RS19965 () | 3708604..3708954 | - | 351 | WP_001007905.1 | phage head closure protein | - |
| FNA65_RS19970 () | 3708964..3709290 | - | 327 | WP_000125994.1 | head-tail connector protein | - |
| FNA65_RS19975 () | 3709287..3711607 | - | 2321 | Protein_3657 | phage portal protein | - |
| FNA65_RS19980 () | 3711553..3711774 | - | 222 | WP_001063101.1 | hypothetical protein | - |
| FNA65_RS19985 () | 3711819..3713755 | - | 1937 | Protein_3659 | phage major capsid protein | - |
| FNA65_RS19990 () | 3713819..3715480 | - | 1662 | WP_073714345.1 | terminase large subunit | - |
| FNA65_RS19995 () | 3715477..3716040 | - | 564 | WP_001530008.1 | terminase small subunit | - |
| FNA65_RS20000 () | 3716331..3716696 | - | 366 | WP_039059168.1 | HNH endonuclease | - |
| FNA65_RS20005 () | 3716738..3716938 | + | 201 | WP_000095744.1 | YlcI/YnfO family protein | - |
| FNA65_RS20010 () | 3717070..3717396 | - | 327 | WP_000828072.1 | TonB family protein | - |
| FNA65_RS24975 () | 3717735..3718202 | - | 468 | WP_001082565.1 | lysis protein | - |
| FNA65_RS20030 () | 3718204..3718317 | - | 114 | WP_000675931.1 | hypothetical protein | - |
| FNA65_RS20035 () | 3718538..3719071 | - | 534 | WP_039080477.1 | lysozyme | - |
| FNA65_RS20040 () | 3719177..3719449 | + | 273 | WP_000369850.1 | hypothetical protein | - |
| FNA65_RS20045 () | 3719415..3719759 | - | 345 | WP_000193278.1 | YdfR family protein | - |
| FNA65_RS20055 () | 3719894..3720124 | + | 231 | Protein_3670 | transposase | - |
| FNA65_RS20060 () | 3720179..3720876 | + | 698 | Protein_3671 | IS1 family transposase | - |
| FNA65_RS20065 () | 3720889..3721044 | + | 156 | Protein_3672 | IS3 family transposase | - |
| FNA65_RS20070 () | 3721093..3721920 | + | 828 | WP_000172700.1 | hypothetical protein | - |
| FNA65_RS20075 () | 3722009..3722980 | - | 972 | WP_000425295.1 | lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase | - |
| FNA65_RS20080 () | 3723100..3724422 | - | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| FNA65_RS20085 () | 3724438..3725370 | - | 933 | WP_004983046.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| FNA65_RS20090 () | 3725449..3726204 | + | 756 | WP_000203000.1 | zinc ABC transporter ATP-binding protein ZnuC | - |
| FNA65_RS20095 () | 3726201..3726986 | + | 786 | WP_000571464.1 | zinc ABC transporter permease subunit ZnuB | - |
| FNA65_RS20100 () | 3727036..3728046 | - | 1011 | WP_000568512.1 | Holliday junction branch migration DNA helicase RuvB | - |
| FNA65_RS20105 () | 3728055..3728666 | - | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| FNA65_RS20110 () | 3728805..3728870 | - | 66 | WP_001386853.1 | stress response small protein YobI | - |
| FNA65_RS20115 () | 3728959..3729656 | - | 698 | Protein_3682 | IS1 family transposase | - |
| FNA65_RS20120 () | 3729711..3729878 | + | 168 | Protein_3683 | IS1 family transposase | - |
| FNA65_RS20135 () | 3730627..3731172 | + | 546 | WP_000973176.1 | bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | - |
| FNA65_RS20140 () | 3731169..3731912 | + | 744 | WP_039059169.1 | adenosylcobinamide-GDP ribazoletransferase | - |
| FNA65_RS20145 () | 3731924..3733009 | + | 1086 | WP_001193778.1 | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | - |
| FNA65_RS20150 () | 3733071..3734006 | + | 936 | WP_000986308.1 | L,D-transpeptidase | - |
| FNA65_RS20160 () | 3734464..3735387 | + | 924 | WP_001011460.1 | nitrogen assimilation transcriptional regulator NAC | - |
| FNA65_RS20165 () | 3735489..3736439 | + | 951 | WP_001010992.1 | HTH-type transcriptional regulator Cbl | - |
| FNA65_RS20170 () | 3736781..3737098 | - | 318 | Protein_3690 | sel1 repeat family protein | - |
| FNA65_RS20175 () | 3737114..3737811 | - | 698 | Protein_3691 | IS1 family transposase | - |
| FNA65_RS20180 () | 3737867..3738106 | - | 240 | Protein_3692 | sel1 repeat family protein | - |
| FNA65_RS20185 () | 3738163..3742328 | - | 4166 | Protein_3693 | RHS repeat protein | - |
| FNA65_RS20190 () | 3742463..3743160 | - | 698 | Protein_3694 | IS1 family transposase | - |
| FNA65_RS20205 () | 3744149..3745411 | - | 1263 | WP_039059174.1 | integrase arm-type DNA-binding domain-containing protein | - |
| FNA65_RS20215 () | 3745653..3747296 | + | 1644 | Protein_3696 | toxic metabolite efflux MATE transporter YeeO | - |
| FNA65_RS20225 () | 3747926..3748642 | - | 717 | WP_000532912.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| FNA65_RS20230 () | 3748985..3750418 | - | 1434 | WP_039059176.1 | AMP nucleosidase | - |
| FNA65_RS20245 () | 3751877..3752809 | - | 933 | Protein_3700 | shikimate transporter | - |
| FNA65_RS20255 () | 3754582..3761338 | - | 6757 | Protein_3702 | Ig-like domain-containing protein | - |
| FNA65_RS20265 () | 3761828..3762625 | - | 798 | WP_001302302.1 | DgsA anti-repressor MtfA | - |
| FNA65_RS20275 () | 3762836..3763291 | - | 456 | WP_114142313.1 | integrase | - |
| FNA65_RS20280 () | 3763341..3764038 | + | 698 | Protein_3705 | IS1 family transposase | - |
| FNA65_RS20285 () | 3763988..3764293 | - | 306 | Protein_3706 | hypothetical protein | - |
| FNA65_RS20290 () | 3764360..3765516 | + | 1157 | WP_134796775.1 | IS3 family transposase | - |
| FNA65_RS20300 () | 3765560..3765859 | - | 300 | Protein_3708 | DUF968 domain-containing protein | - |
| FNA65_RS20305 () | 3765899..3767437 | - | 1539 | WP_134796840.1 | IS66-like element ISEc22 family transposase | - |
| FNA65_RS20310 () | 3767486..3767833 | - | 348 | WP_000612626.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| FNA65_RS20315 () | 3767830..3768210 | - | 381 | WP_001333468.1 | IS66 family insertion sequence hypothetical protein | - |
| FNA65_RS20320 () | 3768565..3769692 | - | 1128 | WP_001063816.1 | IS110-like element ISSso6 family transposase | - |
| FNA65_RS20325 () | 3769823..3770284 | - | 462 | Protein_3713 | hypothetical protein | - |
| FNA65_RS20330 () | 3770286..3770564 | - | 279 | WP_000929754.1 | hypothetical protein | - |
| FNA65_RS20340 () | 3770732..3770944 | - | 213 | WP_000935258.1 | type I toxin-antitoxin system Hok family toxin | Toxin Detail |
| - () | 3770899..3770957 | + | 59 | - | - | Antitoxin Detail |
| FNA65_RS20355 () | 3771539..3771892 | - | 354 | WP_071821547.1 | hypothetical protein | - |
| FNA65_RS20360 () | 3772025..3772405 | + | 381 | WP_001333468.1 | IS66 family insertion sequence hypothetical protein | - |
| FNA65_RS20365 () | 3772402..3772749 | + | 348 | WP_000612626.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| FNA65_RS20370 () | 3772798..3774336 | + | 1539 | WP_134802545.1 | IS66-like element ISEc22 family transposase | - |
| FNA65_RS20375 () | 3774333..3774692 | + | 360 | WP_073692993.1 | 3'-5' exoribonuclease | - |
| FNA65_RS20380 () | 3774751..3774954 | + | 204 | WP_000096344.1 | DUF4224 domain-containing protein | - |
| FNA65_RS20385 () | 3774954..3775309 | + | 356 | Protein_3722 | integrase | - |
| FNA65_RS20400 () | 3776750..3777340 | + | 591 | WP_000377820.1 | DUF2313 domain-containing protein | - |
| FNA65_RS24980 () | 3777327..3777878 | + | 552 | Protein_3725 | phage tail protein | - |
| FNA65_RS24985 () | 3778015..3778536 | + | 522 | WP_165850228.1 | hypothetical protein | - |
| FNA65_RS20410 () | 3778539..3779084 | + | 546 | WP_000902895.1 | tail fiber assembly protein | - |
| FNA65_RS20415 () | 3779108..3780162 | + | 1055 | Protein_3728 | prophage tail fiber N-terminal domain-containing protein | - |
| FNA65_RS20420 () | 3780113..3780736 | + | 624 | WP_000930154.1 | DUF4376 domain-containing protein | - |
| FNA65_RS20425 () | 3780736..3780915 | + | 180 | WP_001039895.1 | hypothetical protein | - |
| FNA65_RS20430 () | 3780916..3782559 | - | 1644 | WP_134797187.1 | E3 ubiquitin--protein ligase | - |
| FNA65_RS20435 () | 3782875..3783543 | - | 669 | WP_000239869.1 | class I SAM-dependent methyltransferase | - |
| FNA65_RS20440 () | 3783600..3783869 | + | 270 | WP_000937487.1 | tail fiber assembly protein | - |
| FNA65_RS20455 () | 3785260..3786150 | - | 891 | Protein_3735 | trehalose-6-phosphate synthase | - |
| FNA65_RS20460 () | 3786125..3786922 | - | 798 | WP_000138775.1 | trehalose-phosphatase | - |
| FNA65_RS20465 () | 3787089..3788075 | - | 987 | WP_000100203.1 | arabinose ABC transporter permease AraH | - |
| FNA65_RS20470 () | 3788090..3789604 | - | 1515 | WP_001187803.1 | arabinose ABC transporter ATP-binding protein AraG | - |
| FNA65_RS20475 () | 3789674..3790663 | - | 990 | WP_005026642.1 | arabinose ABC transporter substrate-binding protein AraF | - |
| FNA65_RS20480 () | 3791377..3791880 | + | 504 | WP_000179469.1 | non-heme ferritin-like protein | - |
| FNA65_RS20485 () | 3791959..3792210 | - | 252 | WP_000082117.1 | DUF2766 domain-containing protein | - |
| FNA65_RS20490 () | 3792325..3792411 | - | 87 | WP_010723106.1 | stress response protein AzuC | - |
| FNA65_RS20500 () | 3792674..3792997 | + | 324 | WP_001237866.1 | YecR-like lipofamily protein | - |
| FNA65_RS20505 () | 3793168..3793665 | + | 498 | WP_004983027.1 | non-heme ferritin | - |
| FNA65_RS20510 () | 3793703..3793942 | - | 240 | WP_000377225.1 | YecH family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|