MGE detailed information
MGE type: Mobilizable plasmid MGE length: 67518 bp
Accession: NZ_CP041427 Location: 1..67518 Organism: Escherichia coli strain STEC388 Replicon: plasmid pSTEC388_2
Accession: NZ_CP041427 Location: 1..67518 Organism: Escherichia coli strain STEC388 Replicon: plasmid pSTEC388_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FNE85_RS24835 () | 172..402 | - | 231 | WP_001352845.1 | conjugal transfer protein TrbD | - |
| FNE85_RS24840 () | 356..946 | - | 591 | WP_161623786.1 | conjugal transfer protein TraP | - |
| FNE85_RS24845 () | 936..2358 | - | 1423 | Protein_3 | conjugal transfer protein TraB | - |
| FNE85_RS24850 () | 2358..3062 | - | 705 | WP_032174952.1 | type-F conjugative transfer system secretin TraK | - |
| FNE85_RS24855 () | 3073..3639 | - | 567 | WP_000399797.1 | type IV conjugative transfer system protein TraE | - |
| FNE85_RS24860 () | 3661..3972 | - | 312 | WP_000012106.1 | type IV conjugative transfer system protein TraL | - |
| FNE85_RS24865 () | 3987..4351 | - | 365 | Protein_7 | type IV conjugative transfer system pilin TraA | - |
| FNE85_RS24870 () | 4384..4779 | - | 396 | WP_089574787.1 | conjugal transfer relaxosome protein TraY | - |
| FNE85_RS24875 () | 4878..5567 | - | 690 | WP_096095966.1 | conjugal transfer transcriptional regulator TraJ | - |
| FNE85_RS24880 () | 5754..6137 | - | 384 | WP_001151524.1 | relaxosome protein TraM | - |
| FNE85_RS24885 () | 6420..7061 | + | 642 | WP_170938719.1 | hypothetical protein | VF |
| FNE85_RS24890 () | 7357..8178 | - | 822 | WP_001424949.1 | DUF945 domain-containing protein | - |
| FNE85_RS24895 () | 8296..8493 | - | 198 | WP_178103023.1 | hypothetical protein | - |
| FNE85_RS25905 () | 8642..8828 | + | 187 | Protein_14 | pilus protein | - |
| FNE85_RS24905 () | 9129..9287 | - | 159 | WP_001302184.1 | type I toxin-antitoxin system Hok family toxin | - |
| - () | 9352..9550 | - | 199 | NuclAT_0 | - | - |
| - () | 9352..9550 | - | 199 | NuclAT_0 | - | - |
| - () | 9352..9550 | - | 199 | NuclAT_0 | - | - |
| - () | 9352..9550 | - | 199 | NuclAT_0 | - | - |
| FNE85_RS24910 () | 9562..10281 | - | 720 | WP_021573167.1 | plasmid SOS inhibition protein A | - |
| FNE85_RS24915 () | 10278..10712 | - | 435 | WP_000845930.1 | conjugation system SOS inhibitor PsiB | - |
| FNE85_RS24920 () | 10767..12725 | - | 1959 | WP_161623787.1 | ParB/RepB/Spo0J family partition protein | - |
| FNE85_RS24925 () | 12789..13022 | - | 234 | WP_096095962.1 | DUF905 family protein | - |
| FNE85_RS24930 () | 13084..13623 | - | 540 | WP_000290811.1 | single-stranded DNA-binding protein | - |
| FNE85_RS25910 () | 13649..13855 | - | 207 | WP_000275848.1 | hypothetical protein | - |
| FNE85_RS24940 () | 14176..15147 | + | 972 | WP_000082158.1 | IS110 family transposase ISSm3 | Transposase |
| FNE85_RS25915 () | 15578..15769 | - | 192 | WP_001027495.1 | hypothetical protein | - |
| FNE85_RS24950 () | 15769..16188 | - | 420 | WP_000271717.1 | DUF1380 family protein | - |
| FNE85_RS24955 () | 16235..16537 | - | 303 | WP_001436678.1 | antirestriction protein | - |
| FNE85_RS25920 () | 17077..17856 | - | 780 | WP_178103024.1 | hypothetical protein | - |
| FNE85_RS24970 () | 17907..18341 | - | 435 | WP_000274480.1 | DUF1380 family protein | - |
| FNE85_RS24975 () | 18355..18576 | - | 222 | WP_001104880.1 | hypothetical protein | - |
| FNE85_RS24980 () | 18577..19230 | - | 654 | WP_096095885.1 | DNA methylase | - |
| FNE85_RS24985 () | 19810..21510 | + | 1701 | WP_096095886.1 | group II intron reverse transcriptase/maturase | - |
| FNE85_RS24990 () | 21740..22051 | - | 312 | WP_001309256.1 | hypothetical protein | - |
| FNE85_RS24995 () | 22115..22471 | - | 357 | WP_178103022.1 | DUF1281 domain-containing protein | - |
| FNE85_RS25000 () | 22481..22624 | - | 144 | WP_000270807.1 | DUF1281 domain-containing protein | - |
| FNE85_RS25005 () | 22791..23568 | - | 778 | Protein_34 | hypothetical protein | - |
| FNE85_RS25010 () | 23802..24764 | - | 963 | WP_000756328.1 | ParB/RepB/Spo0J family partition protein | - |
| FNE85_RS25015 () | 24761..25966 | - | 1206 | WP_000817635.1 | Plasmid partition protein A | VF |
| FNE85_RS25925 () | 26340..26510 | + | 171 | WP_170938683.1 | hypothetical protein | - |
| FNE85_RS25020 () | 26683..26934 | + | 252 | WP_001132895.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| FNE85_RS25025 () | 26931..27218 | + | 288 | WP_001270417.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| FNE85_RS25030 () | 27217..27465 | + | 249 | Protein_40 | transposase | - |
| FNE85_RS25035 () | 28145..29122 | + | 978 | WP_000361610.1 | RepB family plasmid replication initiator protein | - |
| FNE85_RS25040 () | 29407..30147 | - | 741 | WP_096095888.1 | tyrosine-type recombinase/integrase | - |
| FNE85_RS25045 () | 30268..30447 | - | 180 | WP_170938682.1 | serine/threonine protein kinase | - |
| FNE85_RS25050 () | 30484..31278 | - | 795 | Protein_44 | IS3 family transposase ISKpn37 | Transposase |
| FNE85_RS25055 () | 31581..32275 | + | 695 | Protein_45 | IS1 family transposase | - |
| FNE85_RS25060 () | 32815..33393 | + | 579 | WP_096095946.1 | hypothetical protein | VF |
| FNE85_RS25065 () | 33470..34183 | + | 714 | WP_072101556.1 | molecular chaperone | - |
| FNE85_RS25070 () | 34185..34595 | + | 411 | WP_052943207.1 | fimbria/pilus periplasmic chaperone | - |
| FNE85_RS25075 () | 34616..37120 | + | 2505 | WP_161623788.1 | Outer membrane usher protein FimD | VF |
| FNE85_RS25080 () | 37305..37964 | + | 660 | WP_161623789.1 | fimbria/pilus periplasmic chaperone | - |
| FNE85_RS25085 () | 37955..38464 | + | 510 | WP_161623790.1 | type 1 fimbrial protein | - |
| FNE85_RS25090 () | 38481..39590 | + | 1110 | WP_161623791.1 | hypothetical protein | - |
| FNE85_RS25095 () | 39701..40489 | + | 789 | WP_096095951.1 | alpha/beta hydrolase | - |
| FNE85_RS25105 () | 41010..42172 | + | 1163 | WP_085947771.1 | IS3 family transposase IS3 | Transposase |
| FNE85_RS25110 () | 42203..42415 | + | 213 | Protein_55 | IS21 family transposase IS100kyp | Transposase |
| FNE85_RS25115 () | 42569..42855 | + | 287 | Protein_56 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| FNE85_RS25120 () | 43114..43893 | - | 780 | WP_164875756.1 | YaiO family outer membrane beta-barrel protein | - |
| FNE85_RS25125 () | 43896..44495 | - | 600 | WP_086563480.1 | UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase | VF |
| FNE85_RS25130 () | 44446..45657 | - | 1212 | WP_096095959.1 | glycosyltransferase family 2 protein | - |
| FNE85_RS25135 () | 45661..46320 | - | 660 | WP_096095958.1 | PIG-L family deacetylase | - |
| FNE85_RS25140 () | 47080..47777 | + | 698 | Protein_61 | IS1 family transposase | - |
| FNE85_RS25145 () | 48975..49466 | + | 492 | Protein_62 | IS4 family transposase ISSfl9 | Transposase |
| FNE85_RS25150 () | 49499..51070 | - | 1572 | WP_161623572.1 | IS66 family transposase ISCro1 | Transposase |
| FNE85_RS25155 () | 51090..51407 | - | 318 | WP_161623792.1 | IS66 family transposase ISCro1 | Transposase |
| FNE85_RS25160 () | 51448..52125 | + | 678 | WP_096101123.1 | IS66 family transposase ISCro1 | Transposase |
| FNE85_RS25165 () | 52125..52472 | + | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| FNE85_RS25170 () | 52492..54063 | + | 1572 | WP_161623572.1 | IS66 family transposase ISCro1 | Transposase |
| FNE85_RS25175 () | 54095..55105 | - | 1011 | Protein_68 | IS21 family transposase ISEc62 | Transposase |
| FNE85_RS25180 () | 55911..56714 | + | 804 | WP_096095970.1 | AraC family transcriptional regulator | - |
| FNE85_RS25190 () | 57200..58362 | + | 1163 | WP_085947771.1 | IS3 family transposase IS3 | Transposase |
| FNE85_RS25195 () | 58568..58786 | - | 219 | WP_001353651.1 | Heat-stable enterotoxin ST-IA/ST-P | VF |
| FNE85_RS25200 () | 59418..59690 | + | 273 | WP_000019162.1 | hypothetical protein | - |
| FNE85_RS25205 () | 59671..60878 | + | 1208 | WP_096129463.1 | IS91 family transposase ISSbo1 | Transposase |
| FNE85_RS25210 () | 61043..61186 | - | 144 | WP_096129462.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| FNE85_RS25215 () | 61176..61439 | - | 264 | WP_001562946.1 | hypothetical protein | - |
| FNE85_RS25930 () | 61581..61763 | - | 183 | WP_096129461.1 | hypothetical protein | - |
| FNE85_RS25220 () | 62248..62925 | + | 678 | WP_096101123.1 | IS66 family transposase ISCro1 | Transposase |
| FNE85_RS25225 () | 62925..63272 | + | 348 | WP_053879354.1 | IS66 family transposase ISCro1 | Transposase |
| FNE85_RS25230 () | 63292..64863 | + | 1572 | WP_161623572.1 | IS66 family transposase ISCro1 | Transposase |
| FNE85_RS25235 () | 64889..65623 | - | 735 | Protein_80 | TraC family protein | - |
| FNE85_RS25240 () | 65703..66400 | + | 698 | Protein_81 | IS1 family transposase | - |
| FNE85_RS25245 () | 66559..66780 | - | 222 | WP_078206162.1 | conjugal transfer protein TraR | - |
| FNE85_RS25250 () | 66915..67430 | - | 516 | WP_161623793.1 | type IV conjugative transfer system lipoprotein TraV | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|