MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 57104 bp
Accession: NZ_CP040929 Location: 1..57104 Organism: Escherichia coli strain YY76-1 Replicon: plasmid pYY76-1-2
Accession: NZ_CP040929 Location: 1..57104 Organism: Escherichia coli strain YY76-1 Replicon: plasmid pYY76-1-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FH040_RS23245 () | 57..410 | - | 354 | WP_000876434.1 | hypothetical protein | - |
| FH040_RS23250 () | 547..993 | - | 447 | WP_001074386.1 | hypothetical protein | - |
| FH040_RS23255 () | 1033..1869 | - | 837 | WP_001050931.1 | replication initiation protein | - |
| FH040_RS23270 () | 3125..3376 | + | 252 | WP_000121743.1 | plasmid stabilization protein | Antitoxin Detail |
| FH040_RS23275 () | 3366..3647 | + | 282 | WP_000220560.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| FH040_RS23280 () | 3793..4116 | + | 324 | WP_001181903.1 | hypothetical protein | - |
| FH040_RS23285 () | 4161..4406 | + | 246 | WP_000356546.1 | hypothetical protein | - |
| FH040_RS23290 () | 4396..4611 | + | 216 | WP_001180116.1 | hypothetical protein | - |
| FH040_RS23295 () | 4704..5033 | + | 330 | WP_000866648.1 | hypothetical protein | - |
| FH040_RS23790 () | 5320..5469 | + | 150 | WP_000003880.1 | hypothetical protein | - |
| FH040_RS23300 () | 5482..5754 | + | 273 | WP_000160399.1 | hypothetical protein | - |
| FH040_RS23305 () | 6081..6626 | + | 546 | WP_038976855.1 | hypothetical protein | - |
| FH040_RS23310 () | 6629..7786 | + | 1158 | WP_000538023.1 | hypothetical protein | - |
| FH040_RS23315 () | 8147..8638 | + | 492 | WP_000872475.1 | transcription termination factor NusG | - |
| FH040_RS23325 () | 8863..9507 | + | 645 | WP_000953539.1 | lytic transglycosylase domain-containing protein | - |
| FH040_RS23330 () | 9491..9781 | + | 291 | WP_000921916.1 | TrbC/VirB2 family protein | - |
| FH040_RS23335 () | 9805..12564 | + | 2760 | WP_000108725.1 | VirB3 family type IV secretion system protein | - |
| FH040_RS23340 () | 12566..13303 | + | 738 | WP_000737859.1 | pilus assembly protein | - |
| FH040_RS23345 () | 13313..13573 | + | 261 | WP_001228869.1 | EexN family lipoprotein | - |
| FH040_RS23350 () | 13585..14640 | + | 1056 | WP_000235774.1 | type IV secretion system protein | - |
| FH040_RS23355 () | 14830..15552 | + | 723 | WP_000394570.1 | type IV secretion system protein | - |
| FH040_RS23360 () | 15558..16487 | + | 930 | WP_025755764.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| FH040_RS23365 () | 16484..17698 | + | 1215 | WP_025755765.1 | TrbI/VirB10 family protein | - |
| FH040_RS23370 () | 17716..18753 | + | 1038 | WP_000217791.1 | P-type DNA transfer ATPase VirB11 | - |
| FH040_RS23375 () | 18758..20593 | + | 1836 | WP_025755766.1 | type IV secretory system conjugative DNA transfer family protein | - |
| FH040_RS23380 () | 20590..20985 | + | 396 | WP_000733627.1 | cag pathogenicity island Cag12 family protein | - |
| FH040_RS23385 () | 21111..21320 | + | 210 | WP_024256774.1 | hypothetical protein | - |
| FH040_RS23390 () | 21403..21873 | + | 471 | WP_025755767.1 | thermonuclease family protein | - |
| FH040_RS23395 () | 22288..22533 | + | 246 | WP_001243650.1 | hypothetical protein | - |
| FH040_RS23400 () | 22553..24877 | + | 2325 | WP_025755768.1 | type IA DNA topoisomerase | - |
| FH040_RS23405 () | 24889..25338 | + | 450 | WP_001282381.1 | H-NS histone family protein | - |
| FH040_RS23410 () | 25401..25805 | + | 405 | WP_000059893.1 | hypothetical protein | - |
| FH040_RS23420 () | 26000..26704 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| FH040_RS23430 () | 26841..27701 | + | 861 | WP_002904004.1 | class A extended-spectrum beta-lactamase SHV-12 | - |
| FH040_RS23435 () | 27722..28483 | - | 762 | WP_002210513.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| FH040_RS23440 () | 28811..30388 | - | 1578 | WP_001323889.1 | PAS domain-containing methyl-accepting chemotaxis protein | - |
| FH040_RS23795 () | 30542..30607 | + | 66 | Protein_36 | EAL domain-containing protein | - |
| FH040_RS23450 () | 30725..31489 | + | 765 | WP_001389365.1 | IS6-like element IS6100 family transposase | - |
| FH040_RS23465 () | 31982..32566 | - | 585 | WP_001137892.1 | TetR family transcriptional regulator | - |
| FH040_RS23470 () | 32566..33006 | - | 441 | Protein_39 | MFS transporter | - |
| FH040_RS23475 () | 33070..33684 | + | 615 | Protein_40 | IS6 family transposase | - |
| FH040_RS23480 () | 33708..36740 | - | 3033 | WP_124354296.1 | Tn3 family transposase | - |
| FH040_RS23485 () | 36744..37304 | - | 561 | WP_148245970.1 | recombinase family protein | - |
| FH040_RS23490 () | 37732..39291 | + | 1560 | WP_103859199.1 | ATP-binding cassette domain-containing protein | - |
| FH040_RS23495 () | 39380..39961 | + | 582 | Protein_44 | Tn3 family transposase | - |
| FH040_RS23500 () | 40019..40261 | + | 243 | WP_000844627.1 | transposase | - |
| FH040_RS23505 () | 40293..40928 | - | 636 | WP_039045916.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| FH040_RS23510 () | 41034..42233 | + | 1200 | WP_000804063.1 | tetracycline efflux MFS transporter Tet(A) | - |
| FH040_RS23515 () | 42200..42388 | - | 189 | Protein_48 | IS91 family transposase | - |
| FH040_RS23520 () | 42500..42805 | - | 306 | WP_001255015.1 | LysR family transcriptional regulator | - |
| FH040_RS23525 () | 42833..44047 | - | 1215 | WP_058657119.1 | chloramphenicol/florfenicol efflux MFS transporter FloR | - |
| FH040_RS23960 () | 44264..44710 | - | 447 | Protein_51 | DUF3363 domain-containing protein | - |
| FH040_RS23535 () | 45179..46672 | - | 1494 | WP_001120888.1 | IS91-like element ISVsa3 family transposase | - |
| FH040_RS23540 () | 47011..48168 | - | 1158 | WP_094309310.1 | tetracycline-inactivating monooxygenase Tet(X4) | - |
| FH040_RS23545 () | 48158..49003 | - | 846 | WP_164538741.1 | alpha/beta fold hydrolase | - |
| FH040_RS23550 () | 49349..50053 | - | 705 | WP_001067858.1 | IS6-like element IS26 family transposase | - |
| FH040_RS23555 () | 50065..50877 | - | 813 | WP_065799592.1 | lincosamide nucleotidyltransferase Lnu(F) | - |
| FH040_RS23560 () | 51009..51800 | - | 792 | WP_001206356.1 | ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2 | - |
| FH040_RS23565 () | 51946..52548 | + | 603 | Protein_58 | class 1 integron integrase IntI1 | - |
| FH040_RS23570 () | 52601..53305 | - | 705 | WP_001067855.1 | IS6-like element IS26 family transposase | - |
| FH040_RS23575 () | 53370..53897 | + | 528 | Protein_60 | transposase | - |
| FH040_RS23580 () | 53996..54634 | - | 639 | WP_024245155.1 | recombinase family protein | - |
| FH040_RS23585 () | 54920..55540 | + | 621 | WP_000864791.1 | ParA family protein | - |
| FH040_RS23590 () | 55592..55822 | + | 231 | WP_000051064.1 | partitioning protein | - |
| FH040_RS23595 () | 55838..56131 | + | 294 | WP_015060510.1 | hypothetical protein | - |
| FH040_RS23600 () | 56133..57101 | + | 969 | WP_187360405.1 | IS5 family transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|