MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 136766 bp
Accession: NZ_CP040817 Location: 984631..1121396 Organism: Dickeya zeae strain PL65 Replicon: chromosome
Accession: NZ_CP040817 Location: 984631..1121396 Organism: Dickeya zeae strain PL65 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGI21_RS04370 (FGI21_04370) | 983033..983761 | - | 729 | WP_023639812.1 | chromosome partition protein MukE | - |
| FGI21_RS04375 (FGI21_04375) | 983742..985064 | - | 1323 | WP_168362610.1 | chromosome partition protein MukF | - |
| FGI21_RS04380 (FGI21_04380) | 985061..985846 | - | 786 | WP_168362611.1 | tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM | - |
| FGI21_RS04385 (FGI21_04385) | 985999..986778 | + | 780 | WP_220177859.1 | envelope biogenesis factor ElyC | - |
| FGI21_RS04390 (FGI21_04390) | 986851..987747 | - | 897 | WP_220177860.1 | YcbJ family phosphotransferase | - |
| FGI21_RS04395 (FGI21_04395) | 988050..989369 | - | 1320 | WP_220177861.1 | right-handed parallel beta-helix repeat-containing protein | - |
| FGI21_RS04400 (FGI21_04400) | 989968..990375 | - | 408 | WP_205905863.1 | helix-turn-helix domain-containing protein | - |
| FGI21_RS04405 (FGI21_04405) | 990455..990862 | + | 408 | WP_220177862.1 | DoxX family protein | - |
| FGI21_RS04410 (FGI21_04410) | 990889..991632 | + | 744 | WP_220177863.1 | SDR family oxidoreductase | - |
| FGI21_RS04415 (FGI21_04415) | 991659..991997 | + | 339 | WP_168362617.1 | VOC family protein | - |
| FGI21_RS04420 (FGI21_04420) | 992055..992399 | - | 345 | WP_168362618.1 | antibiotic biosynthesis monooxygenase | - |
| FGI21_RS04425 (FGI21_04425) | 992396..992986 | - | 591 | WP_219953200.1 | GNAT family protein | - |
| FGI21_RS04430 (FGI21_04430) | 993232..993474 | - | 243 | WP_168362620.1 | DUF2274 domain-containing protein | - |
| FGI21_RS04435 (FGI21_04435) | 993471..994133 | - | 663 | Protein_876 | conjugal transfer protein TrbI | - |
| FGI21_RS04440 (FGI21_04440) | 994150..994557 | - | 408 | Protein_877 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| FGI21_RS04445 (FGI21_04445) | 994815..995567 | - | 753 | WP_219953199.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| FGI21_RS04450 (FGI21_04450) | 995564..995746 | - | 183 | WP_012884914.1 | Trm112 family protein | - |
| FGI21_RS04455 (FGI21_04455) | 995786..996799 | - | 1014 | WP_220177864.1 | tetraacyldisaccharide 4'-kinase | - |
| FGI21_RS04460 (FGI21_04460) | 996796..998544 | - | 1749 | WP_168362623.1 | lipid A ABC transporter ATP-binding protein/permease MsbA | - |
| FGI21_RS04465 (FGI21_04465) | 998583..1000778 | - | 2196 | WP_258570113.1 | ComEC family protein | - |
| FGI21_RS04470 (FGI21_04470) | 1001143..1001520 | + | 378 | WP_168362624.1 | hypothetical protein | - |
| FGI21_RS04475 (FGI21_04475) | 1001604..1001942 | - | 339 | WP_012884919.1 | DUF496 family protein | - |
| FGI21_RS04480 (FGI21_04480) | 1002346..1003776 | + | 1431 | WP_220177866.1 | exodeoxyribonuclease I | - |
| FGI21_RS04485 (FGI21_04485) | 1003904..1005265 | - | 1362 | WP_012884921.1 | APC family permease | - |
| FGI21_RS04490 (FGI21_04490) | 1005255..1005503 | - | 249 | WP_168362626.1 | hypothetical protein | - |
| FGI21_RS04495 (FGI21_04495) | 1005735..1006466 | - | 732 | WP_240946978.1 | flagellar brake protein | - |
| FGI21_RS04500 (FGI21_04500) | 1006924..1007832 | - | 909 | WP_219953194.1 | triphosphoribosyl-dephospho-CoA synthase CitG | - |
| FGI21_RS04505 (FGI21_04505) | 1007810..1008352 | - | 543 | WP_220177867.1 | citrate lyase holo-[acyl-carrier protein] synthase | - |
| FGI21_RS04510 (FGI21_04510) | 1008349..1009878 | - | 1530 | WP_220177868.1 | citrate lyase subunit alpha | - |
| FGI21_RS04515 (FGI21_04515) | 1009968..1010858 | - | 891 | WP_220177869.1 | citrate (pro-3S)-lyase subunit beta | - |
| FGI21_RS04520 (FGI21_04520) | 1010858..1011148 | - | 291 | WP_168362631.1 | citrate lyase acyl carrier protein | - |
| FGI21_RS04525 (FGI21_04525) | 1011182..1012231 | - | 1050 | WP_168362632.1 | [citrate (pro-3S)-lyase] ligase | - |
| FGI21_RS04530 (FGI21_04530) | 1012307..1013191 | - | 885 | WP_019846321.1 | fumarylacetoacetate hydrolase family protein | - |
| FGI21_RS04535 (FGI21_04535) | 1013259..1014626 | - | 1368 | WP_168362633.1 | 2-hydroxycarboxylate transporter family protein | - |
| FGI21_RS04540 (FGI21_04540) | 1015054..1016694 | + | 1641 | WP_219953191.1 | sensor histidine kinase | - |
| FGI21_RS04545 (FGI21_04545) | 1016666..1017391 | + | 726 | WP_019846585.1 | response regulator | - |
| FGI21_RS04550 (FGI21_04550) | 1017794..1019755 | + | 1962 | WP_220177870.1 | methyl-accepting chemotaxis protein | - |
| FGI21_RS04555 (FGI21_04555) | 1019896..1020717 | - | 822 | WP_220177871.1 | SDR family oxidoreductase | - |
| FGI21_RS04560 (FGI21_04560) | 1020913..1020960 | + | 48 | WP_107768459.1 | his operon leader peptide | - |
| FGI21_RS04565 (FGI21_04565) | 1021120..1022019 | + | 900 | WP_012884936.1 | ATP phosphoribosyltransferase | - |
| FGI21_RS04570 (FGI21_04570) | 1022024..1023334 | + | 1311 | WP_220177872.1 | histidinol dehydrogenase | - |
| FGI21_RS04575 (FGI21_04575) | 1023331..1024401 | + | 1071 | WP_220177873.1 | histidinol-phosphate transaminase | - |
| FGI21_RS04580 (FGI21_04580) | 1024416..1025483 | + | 1068 | WP_168362639.1 | bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB | - |
| FGI21_RS04585 (FGI21_04585) | 1025483..1026073 | + | 591 | WP_038914060.1 | imidazole glycerol phosphate synthase subunit HisH | - |
| FGI21_RS04590 (FGI21_04590) | 1026080..1026817 | + | 738 | WP_168362640.1 | 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase | - |
| FGI21_RS04595 (FGI21_04595) | 1026799..1027575 | + | 777 | WP_168362641.1 | imidazole glycerol phosphate synthase subunit HisF | - |
| FGI21_RS04600 (FGI21_04600) | 1027569..1028183 | + | 615 | WP_168362642.1 | bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE | - |
| FGI21_RS04605 (FGI21_04605) | 1028397..1029047 | + | 651 | WP_220177874.1 | hypothetical protein | - |
| FGI21_RS04610 (FGI21_04610) | 1029225..1029509 | - | 285 | WP_168362644.1 | integration host factor subunit beta | - |
| FGI21_RS04615 (FGI21_04615) | 1029599..1031272 | - | 1674 | WP_168362645.1 | 30S ribosomal protein S1 | - |
| FGI21_RS04620 (FGI21_04620) | 1031377..1032063 | - | 687 | WP_168362646.1 | (d)CMP kinase | - |
| FGI21_RS04625 (FGI21_04625) | 1032285..1033574 | - | 1290 | WP_219953186.1 | 3-phosphoshikimate 1-carboxyvinyltransferase | - |
| FGI21_RS04630 (FGI21_04630) | 1033685..1034770 | - | 1086 | WP_220177875.1 | 3-phosphoserine/phosphohydroxythreonine transaminase | - |
| FGI21_RS04635 (FGI21_04635) | 1035035..1036798 | + | 1764 | WP_220177876.1 | 30S ribosomal protein S12 methylthiotransferase accessory factor YcaO | - |
| FGI21_RS04640 (FGI21_04640) | 1037430..1038287 | + | 858 | WP_219953183.1 | formate transporter FocA | - |
| FGI21_RS04645 (FGI21_04645) | 1038344..1040626 | + | 2283 | WP_168362651.1 | formate C-acetyltransferase | - |
| FGI21_RS04650 (FGI21_04650) | 1041135..1041524 | + | 390 | WP_220177877.1 | hypothetical protein | - |
| FGI21_RS04655 (FGI21_04655) | 1041812..1042057 | + | 246 | WP_038904544.1 | hypothetical protein | - |
| FGI21_RS04665 (FGI21_04665) | 1042318..1042566 | - | 249 | WP_026357823.1 | ogr/Delta-like zinc finger family protein | - |
| FGI21_RS04670 (FGI21_04670) | 1042603..1043742 | - | 1140 | WP_220177878.1 | phage late control D family protein | - |
| FGI21_RS04675 (FGI21_04675) | 1043895..1045073 | + | 1179 | WP_220177879.1 | phage tail sheath family protein | - |
| FGI21_RS04680 (FGI21_04680) | 1045074..1045589 | + | 516 | WP_016940978.1 | phage major tail tube protein | - |
| FGI21_RS04685 (FGI21_04685) | 1045635..1045952 | + | 318 | WP_220177880.1 | phage tail assembly protein | - |
| FGI21_RS04690 (FGI21_04690) | 1045958..1046116 | + | 159 | WP_016940976.1 | GpE family phage tail protein | - |
| FGI21_RS04695 (FGI21_04695) | 1046103..1049087 | + | 2985 | WP_220177881.1 | phage tail tape measure protein | - |
| FGI21_RS04700 (FGI21_04700) | 1049100..1049609 | + | 510 | WP_038908152.1 | phage tail protein | - |
| FGI21_RS04705 (FGI21_04705) | 1049638..1050246 | - | 609 | WP_220177882.1 | tail fiber assembly protein | - |
| FGI21_RS04710 (FGI21_04710) | 1050248..1051459 | - | 1212 | WP_220177883.1 | phage tail protein | - |
| FGI21_RS04715 (FGI21_04715) | 1051456..1052064 | - | 609 | WP_220177884.1 | phage tail protein I | - |
| FGI21_RS04720 (FGI21_04720) | 1052057..1052953 | - | 897 | WP_220177885.1 | baseplate J/gp47 family protein | - |
| FGI21_RS04725 (FGI21_04725) | 1052940..1053308 | - | 369 | WP_220177886.1 | GPW/gp25 family protein | - |
| FGI21_RS04730 (FGI21_04730) | 1053305..1053886 | - | 582 | WP_220177887.1 | phage baseplate assembly protein V | - |
| FGI21_RS04735 (FGI21_04735) | 1053883..1054521 | - | 639 | WP_220177888.1 | phage virion morphogenesis protein | - |
| FGI21_RS04740 (FGI21_04740) | 1054518..1054976 | - | 459 | WP_038906363.1 | phage tail protein | - |
| FGI21_RS04745 (FGI21_04750) | 1055090..1055527 | - | 438 | WP_220177889.1 | DUF2570 domain-containing protein | - |
| FGI21_RS04750 (FGI21_04755) | 1055524..1056069 | - | 546 | WP_220177890.1 | lysozyme | - |
| FGI21_RS04755 (FGI21_04760) | 1056053..1056355 | - | 303 | WP_016940962.1 | HP1 family phage holin | - |
| FGI21_RS04760 (FGI21_04765) | 1056346..1056546 | - | 201 | WP_220177891.1 | tail protein X | - |
| FGI21_RS04765 (FGI21_04770) | 1056546..1057037 | - | 492 | WP_220177892.1 | head completion/stabilization protein | - |
| FGI21_RS04770 (FGI21_04775) | 1057136..1058002 | - | 867 | WP_038904567.1 | phage terminase small subunit | - |
| FGI21_RS04775 (FGI21_04780) | 1058046..1059101 | - | 1056 | WP_220177893.1 | phage major capsid protein, P2 family | - |
| FGI21_RS04780 (FGI21_04785) | 1059127..1059966 | - | 840 | WP_038904570.1 | GPO family capsid scaffolding protein | - |
| FGI21_RS04785 (FGI21_04790) | 1060125..1061852 | + | 1728 | WP_220177894.1 | terminase family protein | - |
| FGI21_RS04790 (FGI21_04795) | 1061852..1062904 | + | 1053 | WP_220177895.1 | phage portal protein | - |
| FGI21_RS04795 (FGI21_04800) | 1063351..1063761 | - | 411 | WP_220177896.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| FGI21_RS04800 (FGI21_04805) | 1063789..1063968 | - | 180 | WP_012764944.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| FGI21_RS04805 (FGI21_04810) | 1064297..1064875 | + | 579 | WP_210194408.1 | sce7726 family protein | - |
| FGI21_RS04810 (FGI21_04815) | 1064835..1065935 | - | 1101 | WP_220177897.1 | beta family protein | - |
| FGI21_RS04815 (FGI21_04820) | 1066153..1068558 | - | 2406 | WP_258570085.1 | replication endonuclease | - |
| FGI21_RS04820 (FGI21_04825) | 1069237..1070184 | - | 948 | WP_258570114.1 | Dam family site-specific DNA-(adenine-N6)-methyltransferase | - |
| FGI21_RS04825 (FGI21_04830) | 1070190..1070414 | - | 225 | WP_220177899.1 | TraR/DksA family transcriptional regulator | - |
| FGI21_RS04830 (FGI21_04835) | 1070414..1070644 | - | 231 | WP_016940949.1 | DUF2732 family protein | - |
| FGI21_RS04835 (FGI21_04840) | 1070709..1071050 | - | 342 | WP_016940948.1 | DUF5347 family protein | - |
| FGI21_RS04840 (FGI21_04845) | 1071055..1071264 | - | 210 | WP_071526193.1 | DUF2724 domain-containing protein | - |
| FGI21_RS21325 (FGI21_04850) | 1071266..1071481 | - | 216 | WP_071595855.1 | hypothetical protein | - |
| FGI21_RS04845 (FGI21_04855) | 1071523..1071843 | - | 321 | WP_220177900.1 | Cox family DNA-binding protein | - |
| FGI21_RS04850 (FGI21_04860) | 1071848..1072138 | - | 291 | WP_038904579.1 | Cox family DNA-binding protein | - |
| FGI21_RS04855 (FGI21_04865) | 1072387..1072851 | + | 465 | WP_220177901.1 | hypothetical protein | - |
| FGI21_RS04860 (FGI21_04870) | 1073045..1073317 | - | 273 | WP_220177902.1 | hypothetical protein | - |
| FGI21_RS04865 (FGI21_04875) | 1073471..1073764 | + | 294 | WP_220177903.1 | helix-turn-helix transcriptional regulator | - |
| FGI21_RS04870 (FGI21_04880) | 1073831..1074817 | + | 987 | WP_220177904.1 | tyrosine-type recombinase/integrase | - |
| FGI21_RS04875 (FGI21_04885) | 1074858..1075655 | + | 798 | WP_220177905.1 | pyruvate formate lyase 1-activating protein | - |
| FGI21_RS04880 (FGI21_04890) | 1076192..1077121 | + | 930 | WP_220177906.1 | LysR family transcriptional regulator | - |
| FGI21_RS04885 (FGI21_04895) | 1077140..1078288 | - | 1149 | WP_220177907.1 | MFS transporter | - |
| FGI21_RS04890 (FGI21_04900) | 1078430..1079338 | - | 909 | WP_220177908.1 | LysR family transcriptional regulator | - |
| FGI21_RS04895 (FGI21_04905) | 1079442..1080317 | + | 876 | WP_220177909.1 | MBL fold metallo-hydrolase | - |
| FGI21_RS04900 (FGI21_04910) | 1080605..1081249 | + | 645 | WP_023639844.1 | DsbA family protein | - |
| FGI21_RS04905 (FGI21_04915) | 1081395..1082009 | - | 615 | WP_220177910.1 | Tat proofreading chaperone DmsD | - |
| FGI21_RS04910 (FGI21_04920) | 1082268..1083590 | - | 1323 | WP_102800868.1 | IS4 family transposase | - |
| FGI21_RS04915 (FGI21_04925) | 1083714..1085009 | - | 1296 | WP_220177911.1 | serine--tRNA ligase | - |
| FGI21_RS04920 (FGI21_04930) | 1085115..1086458 | - | 1344 | WP_220177912.1 | replication-associated recombination protein A | - |
| FGI21_RS04925 (FGI21_04935) | 1086466..1087077 | - | 612 | WP_026358015.1 | outer membrane lipoprotein chaperone LolA | - |
| FGI21_RS04930 (FGI21_04940) | 1087270..1090980 | - | 3711 | WP_219953174.1 | DNA translocase FtsK 4TM domain-containing protein | - |
| FGI21_RS04935 (FGI21_04945) | 1091098..1091592 | - | 495 | WP_010277211.1 | leucine-responsive transcriptional regulator Lrp | - |
| FGI21_RS04940 (FGI21_04950) | 1092096..1093052 | + | 957 | WP_219953173.1 | thioredoxin-disulfide reductase | - |
| FGI21_RS04945 (FGI21_04955) | 1093287..1095053 | + | 1767 | WP_219953172.1 | cysteine/glutathione ABC transporter permease/ATP-binding protein CydD | - |
| FGI21_RS04950 (FGI21_04960) | 1095073..1096794 | + | 1722 | WP_220178379.1 | cysteine/glutathione ABC transporter ATP-binding protein/permease CydC | - |
| FGI21_RS04955 (FGI21_04965) | 1096807..1097535 | + | 729 | WP_168362676.1 | leucyl/phenylalanyl-tRNA--protein transferase | - |
| FGI21_RS04960 (FGI21_04970) | 1097627..1097845 | + | 219 | WP_002211347.1 | translation initiation factor IF-1 | - |
| FGI21_RS04965 (FGI21_04975) | 1098124..1100400 | - | 2277 | WP_168362677.1 | ATP-dependent Clp protease ATP-binding subunit ClpA | - |
| FGI21_RS04970 (FGI21_04980) | 1100429..1100749 | - | 321 | WP_012884971.1 | ATP-dependent Clp protease adapter ClpS | - |
| FGI21_RS04975 (FGI21_04985) | 1101071..1101292 | + | 222 | WP_012770072.1 | cold shock-like protein CspD | - |
| FGI21_RS04980 (FGI21_04990) | 1101442..1103103 | - | 1662 | WP_219953171.1 | ATP-dependent endonuclease | - |
| FGI21_RS04985 (FGI21_04995) | 1103355..1105007 | + | 1653 | WP_220177913.1 | hydroxylamine reductase | - |
| FGI21_RS04990 (FGI21_05000) | 1105069..1106076 | + | 1008 | WP_220177914.1 | NADH oxidoreductase | - |
| FGI21_RS04995 (FGI21_05005) | 1106452..1107921 | + | 1470 | WP_168362682.1 | DUF2867 domain-containing protein | - |
| FGI21_RS05000 (FGI21_05010) | 1108018..1108890 | - | 873 | WP_219953170.1 | N-acetylmuramoyl-L-alanine amidase | - |
| FGI21_RS05005 (FGI21_05015) | 1108887..1109213 | - | 327 | WP_168362684.1 | heavy metal-binding domain-containing protein | - |
| FGI21_RS05010 (FGI21_05020) | 1109564..1110292 | + | 729 | WP_172640067.1 | arginine ABC transporter ATP-binding protein ArtP | - |
| FGI21_RS05015 (FGI21_05025) | 1110310..1111041 | + | 732 | WP_219953169.1 | arginine ABC transporter substrate-binding protein | - |
| FGI21_RS05020 (FGI21_05030) | 1111057..1111773 | + | 717 | WP_220177915.1 | arginine ABC transporter permease ArtQ | - |
| FGI21_RS05025 (FGI21_05035) | 1111773..1112444 | + | 672 | WP_220177916.1 | arginine ABC transporter permease ArtM | - |
| FGI21_RS05030 (FGI21_05040) | 1112720..1113454 | + | 735 | WP_220177917.1 | arginine ABC transporter substrate-binding protein | - |
| FGI21_RS05035 (FGI21_05045) | 1113579..1114709 | - | 1131 | WP_220177918.1 | 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC | - |
| FGI21_RS05040 (FGI21_05050) | 1114774..1115226 | - | 453 | WP_258570115.1 | YbjO family protein | - |
| FGI21_RS05045 (FGI21_05055) | 1115335..1116180 | - | 846 | WP_168362689.1 | putrescine ABC transporter permease PotI | - |
| FGI21_RS05050 (FGI21_05060) | 1116177..1117136 | - | 960 | WP_168362690.1 | putrescine ABC transporter permease PotH | - |
| FGI21_RS05055 (FGI21_05065) | 1117152..1118279 | - | 1128 | WP_023639861.1 | putrescine ABC transporter ATP-binding subunit PotG | - |
| FGI21_RS05060 (FGI21_05070) | 1118396..1119505 | - | 1110 | WP_168362691.1 | spermidine/putrescine ABC transporter substrate-binding protein PotF | - |
| FGI21_RS05065 (FGI21_05075) | 1119890..1120369 | - | 480 | WP_012884989.1 | YbjN domain-containing protein | - |
| FGI21_RS05070 (FGI21_05080) | 1120550..1121452 | - | 903 | WP_012884990.1 | 30S ribosomal protein S6--L-glutamate ligase | - |
| FGI21_RS05075 (FGI21_05085) | 1121465..1122187 | - | 723 | WP_219953165.1 | oxygen-insensitive NADPH nitroreductase | - |
| FGI21_RS05080 (FGI21_05090) | 1122691..1122948 | + | 258 | WP_168362693.1 | GrxA family glutaredoxin | - |
| FGI21_RS05085 (FGI21_05095) | 1123011..1123382 | - | 372 | WP_168362694.1 | inner membrane protein YbjM | - |
| FGI21_RS05090 (FGI21_05105) | 1123729..1125417 | + | 1689 | WP_012884995.1 | aspartate:alanine antiporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|