MGE detailed information
MGE type: Prophage MGE length: 35568 bp
Accession: NZ_CP040243 Location: 1375844..1411411 Organism: Glaesserella parasuis strain HPS-1 Replicon: chromosome
Accession: NZ_CP040243 Location: 1375844..1411411 Organism: Glaesserella parasuis strain HPS-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FEF05_RS06770 () | 1371910..1372213 | + | 304 | Protein_1299 | transposase | - |
| FEF05_RS06775 () | 1372382..1372861 | - | 480 | WP_010786761.1 | redoxin family protein | - |
| FEF05_RS06780 () | 1372879..1373529 | - | 651 | WP_035491394.1 | cytochrome c biogenesis protein CcdA | - |
| FEF05_RS06785 () | 1373531..1374601 | - | 1071 | WP_035494346.1 | peptide-methionine (R)-S-oxide reductase MsrB | - |
| FEF05_RS06790 () | 1374705..1375133 | - | 429 | WP_149350956.1 | hypothetical protein | - |
| FEF05_RS06795 () | 1375275..1375847 | + | 573 | WP_005713976.1 | sigma-70 family RNA polymerase sigma factor | - |
| FEF05_RS06800 () | 1375844..1376029 | + | 186 | WP_005713975.1 | zf-HC2 domain-containing protein | - |
| FEF05_RS06805 () | 1376219..1376963 | - | 745 | Protein_1306 | IS481 family transposase ISErsp1 | Transposase |
| FEF05_RS06810 () | 1377184..1377480 | - | 297 | WP_051453330.1 | helix-turn-helix domain-containing protein | - |
| FEF05_RS06815 () | 1377648..1378463 | + | 816 | WP_149350957.1 | GPO family capsid scaffolding protein | - |
| FEF05_RS06820 () | 1378476..1378679 | + | 204 | WP_016528073.1 | hypothetical protein | - |
| FEF05_RS06825 () | 1378679..1379332 | + | 654 | WP_149350958.1 | terminase | - |
| FEF05_RS06830 () | 1379367..1379504 | + | 138 | WP_010786754.1 | hypothetical protein | - |
| FEF05_RS06835 () | 1379488..1380012 | + | 525 | WP_038513807.1 | lysozyme | - |
| FEF05_RS06840 () | 1379997..1380464 | + | 468 | WP_035494338.1 | hypothetical protein | - |
| FEF05_RS06845 () | 1380647..1381165 | + | 519 | WP_012621781.1 | hypothetical protein | - |
| FEF05_RS06850 () | 1381371..1381589 | + | 219 | WP_005713957.1 | TraR/DksA family transcriptional regulator | - |
| FEF05_RS06855 () | 1381586..1382020 | + | 435 | WP_149350959.1 | phage tail protein | - |
| FEF05_RS06860 () | 1382061..1382522 | + | 462 | WP_044008948.1 | phage virion morphogenesis protein | - |
| FEF05_RS06865 () | 1382893..1383880 | + | 988 | Protein_1318 | IS110 family transposase ISStma4 | Transposase |
| FEF05_RS06870 () | 1384250..1385188 | - | 939 | WP_044008946.1 | Ig domain-containing protein | - |
| FEF05_RS06875 () | 1385200..1385958 | - | 759 | WP_149350960.1 | hypothetical protein | - |
| FEF05_RS06880 () | 1386083..1386559 | - | 477 | WP_021114927.1 | hypothetical protein | - |
| FEF05_RS06885 () | 1386614..1387033 | - | 420 | WP_005714625.1 | Bifunctional (p)ppGpp synthase/hydrolase RelA | VF |
| FEF05_RS06890 () | 1387033..1387251 | - | 219 | WP_005714623.1 | hypothetical protein | - |
| FEF05_RS06895 () | 1387251..1387883 | - | 633 | WP_149350961.1 | hypothetical protein | - |
| FEF05_RS06900 () | 1387952..1388158 | - | 207 | WP_005714619.1 | hypothetical protein | - |
| FEF05_RS06905 () | 1388155..1388466 | - | 312 | WP_149350962.1 | hypothetical protein | - |
| FEF05_RS06910 () | 1388469..1390064 | - | 1596 | WP_149350963.1 | minor capsid protein | - |
| FEF05_RS06915 () | 1390021..1391418 | - | 1398 | WP_149350964.1 | DUF4055 domain-containing protein | - |
| FEF05_RS06920 () | 1391428..1392663 | - | 1236 | WP_149350965.1 | PBSX family phage terminase large subunit | - |
| FEF05_RS06925 () | 1392647..1393099 | - | 453 | WP_044008920.1 | terminase small subunit | - |
| FEF05_RS06930 () | 1393268..1393417 | - | 150 | WP_021110724.1 | hypothetical protein | - |
| FEF05_RS06935 () | 1393446..1393790 | - | 345 | WP_187765027.1 | DUF2570 family protein | - |
| FEF05_RS06940 () | 1393763..1394308 | - | 546 | WP_149350966.1 | lysozyme | - |
| FEF05_RS06945 () | 1394283..1394582 | - | 300 | WP_187765028.1 | hypothetical protein | - |
| FEF05_RS06950 () | 1394696..1395259 | + | 564 | WP_012621835.1 | hypothetical protein | - |
| FEF05_RS06955 () | 1395605..1395790 | + | 186 | WP_005714898.1 | type II toxin-antitoxin system HicA family toxin | - |
| FEF05_RS06960 () | 1395820..1396257 | + | 438 | WP_005714900.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| FEF05_RS06965 () | 1396279..1396656 | - | 378 | WP_021109621.1 | ECF sigma factor family protein | - |
| FEF05_RS06970 () | 1396653..1397222 | - | 570 | WP_149350967.1 | recombination protein NinG | - |
| FEF05_RS11885 () | 1397194..1397370 | - | 177 | WP_187765029.1 | hypothetical protein | - |
| FEF05_RS06975 () | 1397469..1397651 | + | 183 | WP_005715063.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| FEF05_RS06980 () | 1397678..1398091 | + | 414 | WP_021113997.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| FEF05_RS06985 () | 1398125..1398553 | - | 429 | WP_149350968.1 | recombination protein NinB | - |
| FEF05_RS06990 () | 1398615..1399970 | - | 1356 | WP_149350969.1 | AAA family ATPase | - |
| FEF05_RS06995 () | 1399970..1400848 | - | 879 | WP_021114967.1 | replication protein | - |
| FEF05_RS07000 () | 1401069..1401326 | - | 258 | Protein_1346 | hypothetical protein | - |
| FEF05_RS07005 () | 1401347..1401547 | - | 201 | WP_016527563.1 | helix-turn-helix domain-containing protein | - |
| FEF05_RS07010 () | 1401678..1402361 | + | 684 | WP_149350970.1 | S24 family peptidase | - |
| FEF05_RS07015 () | 1402461..1403309 | + | 849 | WP_005714534.1 | KilA-N domain-containing protein | - |
| FEF05_RS07020 () | 1403490..1404329 | + | 840 | WP_149350971.1 | DUF3800 domain-containing protein | - |
| FEF05_RS07025 () | 1404357..1404647 | - | 291 | WP_016527868.1 | putative addiction module antidote protein | - |
| FEF05_RS07030 () | 1404707..1405153 | + | 447 | WP_005714539.1 | hypothetical protein | - |
| FEF05_RS07035 () | 1405757..1406044 | + | 288 | WP_012621801.1 | hypothetical protein | - |
| FEF05_RS07040 () | 1406071..1406241 | - | 171 | WP_016527559.1 | DUF1508 domain-containing protein | - |
| FEF05_RS07045 () | 1406256..1406477 | + | 222 | WP_012621803.1 | hypothetical protein | - |
| FEF05_RS07050 () | 1407056..1407589 | + | 534 | WP_149350972.1 | hypothetical protein | - |
| FEF05_RS07055 () | 1408173..1408775 | + | 603 | WP_149350973.1 | Bro-N domain-containing protein | - |
| FEF05_RS07065 () | 1409057..1410179 | - | 1123 | Protein_1358 | Prophage integrase IntA ; Integrase | Integrase |
| FEF05_RS07075 () | 1410593..1411411 | - | 819 | WP_021109636.1 | bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH | - |
| FEF05_RS07080 () | 1411421..1412500 | - | 1080 | WP_010786722.1 | lytic murein transglycosylase | - |
| FEF05_RS07085 () | 1412513..1413430 | - | 918 | WP_149350974.1 | tRNA pseudouridine(55) synthase TruB | - |
| FEF05_RS07090 () | 1413433..1413816 | - | 384 | WP_149350975.1 | 30S ribosome-binding factor RbfA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|