Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | hicAB/HicA-HicB |
| Location | 1397469..1398091 | Replicon | chromosome |
| Accession | NZ_CP040243 | ||
| Organism | Glaesserella parasuis strain HPS-1 | ||
Toxin (Protein)
| Gene name | hicA | Uniprot ID | A0A836YYE8 |
| Locus tag | FEF05_RS06975 | Protein ID | WP_005715063.1 |
| Coordinates | 1397469..1397651 (+) | Length | 61 a.a. |
Antitoxin (Protein)
| Gene name | hicB | Uniprot ID | A0A836MEP4 |
| Locus tag | FEF05_RS06980 | Protein ID | WP_021113997.1 |
| Coordinates | 1397678..1398091 (+) | Length | 138 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FEF05_RS06925 | 1392647..1393099 | - | 453 | WP_044008920.1 | terminase small subunit | - |
| FEF05_RS06930 | 1393268..1393417 | - | 150 | WP_021110724.1 | hypothetical protein | - |
| FEF05_RS06935 | 1393446..1393790 | - | 345 | WP_187765027.1 | DUF2570 family protein | - |
| FEF05_RS06940 | 1393763..1394308 | - | 546 | WP_149350966.1 | lysozyme | - |
| FEF05_RS06945 | 1394283..1394582 | - | 300 | WP_187765028.1 | hypothetical protein | - |
| FEF05_RS06950 | 1394696..1395259 | + | 564 | WP_012621835.1 | hypothetical protein | - |
| FEF05_RS06955 | 1395605..1395790 | + | 186 | WP_005714898.1 | type II toxin-antitoxin system HicA family toxin | - |
| FEF05_RS06960 | 1395820..1396257 | + | 438 | WP_005714900.1 | type II toxin-antitoxin system HicB family antitoxin | - |
| FEF05_RS06965 | 1396279..1396656 | - | 378 | WP_021109621.1 | ECF sigma factor family protein | - |
| FEF05_RS06970 | 1396653..1397222 | - | 570 | WP_149350967.1 | recombination protein NinG | - |
| FEF05_RS11885 | 1397194..1397370 | - | 177 | WP_187765029.1 | hypothetical protein | - |
| FEF05_RS06975 | 1397469..1397651 | + | 183 | WP_005715063.1 | type II toxin-antitoxin system HicA family toxin | Toxin |
| FEF05_RS06980 | 1397678..1398091 | + | 414 | WP_021113997.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin |
| FEF05_RS06985 | 1398125..1398553 | - | 429 | WP_149350968.1 | recombination protein NinB | - |
| FEF05_RS06990 | 1398615..1399970 | - | 1356 | WP_149350969.1 | AAA family ATPase | - |
| FEF05_RS06995 | 1399970..1400848 | - | 879 | WP_021114967.1 | replication protein | - |
| FEF05_RS07000 | 1401069..1401326 | - | 258 | Protein_1346 | hypothetical protein | - |
| FEF05_RS07005 | 1401347..1401547 | - | 201 | WP_016527563.1 | helix-turn-helix domain-containing protein | - |
| FEF05_RS07010 | 1401678..1402361 | + | 684 | WP_149350970.1 | S24 family peptidase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1375844..1411411 | 35567 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 61 a.a. Molecular weight: 6678.80 Da Isoelectric Point: 10.6602
>T125173 WP_005715063.1 NZ_CP040243:1397469-1397651 [Glaesserella parasuis]
VDSKTIIKMIEADGWYLVATSGSHHQFKHPTKQGRVTVPHPKKDLKKGTELSILKQAGLK
VDSKTIIKMIEADGWYLVATSGSHHQFKHPTKQGRVTVPHPKKDLKKGTELSILKQAGLK
Download Length: 183 bp
>T125173 NZ_CP040243:1397469-1397651 [Glaesserella parasuis]
GTGGATAGCAAAACCATAATTAAAATGATTGAAGCGGACGGTTGGTACTTAGTTGCAACAAGTGGAAGCCACCATCAATT
CAAACATCCAACTAAACAAGGGCGAGTAACAGTGCCTCATCCGAAAAAGGATTTAAAAAAAGGAACTGAACTCTCAATAC
TTAAACAAGCGGGGCTAAAATAG
GTGGATAGCAAAACCATAATTAAAATGATTGAAGCGGACGGTTGGTACTTAGTTGCAACAAGTGGAAGCCACCATCAATT
CAAACATCCAACTAAACAAGGGCGAGTAACAGTGCCTCATCCGAAAAAGGATTTAAAAAAAGGAACTGAACTCTCAATAC
TTAAACAAGCGGGGCTAAAATAG
Antitoxin
Download Length: 138 a.a. Molecular weight: 15277.32 Da Isoelectric Point: 4.3689
>AT125173 WP_021113997.1 NZ_CP040243:1397678-1398091 [Glaesserella parasuis]
MLYPIAIEPGDETHAYGVIVPDIPGCFSAGDTLEEAYQNVKEAIVFHLEGLVEDGEDIPLPTSIENHRNNPDFTDYGMFF
GIVDVDISHLLGKAERINITLPSYLIKRIDDFVAVHKEYKNRSNFLAKIAADKILTA
MLYPIAIEPGDETHAYGVIVPDIPGCFSAGDTLEEAYQNVKEAIVFHLEGLVEDGEDIPLPTSIENHRNNPDFTDYGMFF
GIVDVDISHLLGKAERINITLPSYLIKRIDDFVAVHKEYKNRSNFLAKIAADKILTA
Download Length: 414 bp
>AT125173 NZ_CP040243:1397678-1398091 [Glaesserella parasuis]
ATGTTATACCCAATTGCAATTGAACCAGGTGACGAAACTCACGCTTACGGCGTTATCGTGCCTGATATTCCAGGGTGCTT
CTCTGCTGGCGATACCCTCGAAGAAGCATATCAAAATGTCAAAGAAGCCATCGTGTTCCACCTTGAAGGCTTAGTTGAAG
ATGGAGAAGATATTCCATTACCAACGAGTATCGAAAATCACCGTAACAACCCTGATTTTACCGATTACGGTATGTTCTTT
GGGATTGTTGATGTTGATATTAGCCATTTACTCGGAAAAGCCGAACGCATCAACATCACCCTCCCTAGCTATCTCATCAA
ACGCATTGATGATTTTGTTGCGGTTCACAAAGAGTATAAAAACCGTAGCAACTTCTTAGCTAAAATCGCAGCGGATAAAA
TCTTAACCGCTTAA
ATGTTATACCCAATTGCAATTGAACCAGGTGACGAAACTCACGCTTACGGCGTTATCGTGCCTGATATTCCAGGGTGCTT
CTCTGCTGGCGATACCCTCGAAGAAGCATATCAAAATGTCAAAGAAGCCATCGTGTTCCACCTTGAAGGCTTAGTTGAAG
ATGGAGAAGATATTCCATTACCAACGAGTATCGAAAATCACCGTAACAACCCTGATTTTACCGATTACGGTATGTTCTTT
GGGATTGTTGATGTTGATATTAGCCATTTACTCGGAAAAGCCGAACGCATCAACATCACCCTCCCTAGCTATCTCATCAA
ACGCATTGATGATTTTGTTGCGGTTCACAAAGAGTATAAAAACCGTAGCAACTTCTTAGCTAAAATCGCAGCGGATAAAA
TCTTAACCGCTTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A836YYE8 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A836MEP4 |