MGE detailed information
MGE type: Conjugative plasmid MGE length: 140291 bp
Accession: NZ_CP040171 Location: 1..140291 Organism: Vibrio cholerae strain VC1374 Replicon: plasmid pVC1374
Accession: NZ_CP040171 Location: 1..140291 Organism: Vibrio cholerae strain VC1374 Replicon: plasmid pVC1374
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FDZ90_RS00010 () | 175..390 | - | 216 | Protein_1 | hypothetical protein | - |
| FDZ90_RS00015 () | 726..1153 | - | 428 | Protein_2 | hypothetical protein | - |
| FDZ90_RS00020 () | 1150..1497 | - | 348 | WP_000039129.1 | hypothetical protein | - |
| FDZ90_RS00025 () | 1509..2693 | - | 1185 | WP_000245298.1 | hypothetical protein | - |
| FDZ90_RS00030 () | 2687..2881 | - | 195 | WP_000757530.1 | DUF2997 domain-containing protein | - |
| FDZ90_RS00035 () | 2930..3322 | - | 393 | WP_000018404.1 | hypothetical protein | - |
| FDZ90_RS00040 () | 3327..3656 | - | 330 | WP_000277953.1 | hypothetical protein | - |
| FDZ90_RS00045 () | 3812..5275 | - | 1464 | WP_001280522.1 | AAA family ATPase | - |
| FDZ90_RS00050 () | 5349..6281 | - | 933 | WP_000434071.1 | hypothetical protein | - |
| FDZ90_RS00055 () | 6843..7340 | - | 498 | WP_000062185.1 | hypothetical protein | - |
| FDZ90_RS00060 () | 7343..7831 | - | 489 | WP_001273096.1 | DUF1643 domain-containing protein | - |
| FDZ90_RS00065 () | 7928..8263 | + | 336 | WP_000683476.1 | hypothetical protein | - |
| FDZ90_RS00070 () | 8278..8748 | - | 471 | WP_001281821.1 | hypothetical protein | - |
| FDZ90_RS00075 () | 8741..9112 | - | 372 | WP_000516916.1 | hypothetical protein | - |
| FDZ90_RS00080 () | 9123..9317 | - | 195 | WP_000343597.1 | hypothetical protein | - |
| FDZ90_RS00085 () | 9658..10206 | - | 549 | WP_001061574.1 | transcriptional regulator | - |
| FDZ90_RS00090 () | 10369..10719 | + | 351 | WP_000270043.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| FDZ90_RS00095 () | 10724..11026 | + | 303 | WP_000124640.1 | XRE family transcriptional regulator | Antitoxin Detail |
| FDZ90_RS00100 () | 11053..11346 | - | 294 | WP_001239997.1 | chromosome segregation protein ParM | - |
| FDZ90_RS00105 () | 11434..11706 | - | 273 | WP_001043047.1 | HU family DNA-binding protein | - |
| FDZ90_RS00110 () | 11764..12291 | - | 528 | WP_001236377.1 | thermonuclease family protein | - |
| FDZ90_RS00115 () | 12522..13379 | - | 858 | WP_001167032.1 | hypothetical protein | - |
| FDZ90_RS00120 () | 13366..13596 | - | 231 | WP_000972663.1 | hypothetical protein | - |
| FDZ90_RS00125 () | 13596..14114 | - | 519 | WP_000210756.1 | nitrite reductase | - |
| FDZ90_RS00130 () | 14111..14557 | - | 447 | WP_000919345.1 | Fe3+-siderophore ABC transporter permease | - |
| FDZ90_RS00135 () | 14557..14916 | - | 360 | WP_000422768.1 | hypothetical protein | - |
| FDZ90_RS00140 () | 14973..15401 | - | 429 | WP_000591074.1 | hypothetical protein | - |
| FDZ90_RS00145 () | 15435..16295 | - | 861 | WP_000139698.1 | DsbA family protein | - |
| FDZ90_RS00150 () | 16311..17270 | - | 960 | WP_000829616.1 | S49 family peptidase | - |
| FDZ90_RS00155 () | 17270..18124 | - | 855 | WP_000539392.1 | hypothetical protein | - |
| FDZ90_RS00160 () | 18129..18422 | - | 294 | WP_001370730.1 | hypothetical protein | - |
| FDZ90_RS00165 () | 18433..18906 | - | 474 | WP_000057877.1 | hypothetical protein | - |
| FDZ90_RS00170 () | 19003..19524 | - | 522 | WP_000805800.1 | hypothetical protein | - |
| FDZ90_RS00175 () | 19527..20048 | - | 522 | WP_000393785.1 | hypothetical protein | - |
| FDZ90_RS00180 () | 20053..20661 | - | 609 | WP_000849071.1 | hypothetical protein | - |
| FDZ90_RS00185 () | 20930..22045 | + | 1116 | WP_000946102.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| FDZ90_RS00190 () | 22063..22497 | + | 435 | WP_000883925.1 | hypothetical protein | - |
| FDZ90_RS00195 () | 23534..24634 | - | 1101 | WP_000350011.1 | plasmid replication protein | - |
| FDZ90_RS00200 () | 24619..24906 | - | 288 | WP_000127321.1 | hypothetical protein | - |
| FDZ90_RS00205 () | 24911..25450 | - | 540 | WP_001447712.1 | hypothetical protein | - |
| FDZ90_RS00210 () | 25949..26932 | + | 984 | WP_000077458.1 | ParM/StbA family protein | - |
| FDZ90_RS00215 () | 26949..27242 | + | 294 | WP_000919078.1 | hypothetical protein | - |
| FDZ90_RS00220 () | 27244..27663 | + | 420 | WP_000651490.1 | H-NS histone family protein | - |
| FDZ90_RS00225 () | 27723..28274 | - | 552 | WP_001020646.1 | hypothetical protein | - |
| FDZ90_RS00230 () | 28271..28879 | - | 609 | WP_000891157.1 | hypothetical protein | - |
| FDZ90_RS00235 () | 28890..29423 | - | 534 | WP_000790610.1 | transglycosylase SLT domain-containing protein | - |
| FDZ90_RS00240 () | 29423..29695 | - | 273 | WP_000356489.1 | helix-turn-helix domain-containing protein | - |
| FDZ90_RS00245 () | 30411..30773 | + | 363 | WP_000683483.1 | hypothetical protein | - |
| FDZ90_RS00250 () | 30811..34425 | - | 3615 | WP_000534551.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| FDZ90_RS00255 () | 34438..35871 | - | 1434 | WP_000256129.1 | conjugal transfer protein TraH | - |
| FDZ90_RS00260 () | 35873..36913 | - | 1041 | WP_001326396.1 | conjugal transfer protein TraF | - |
| FDZ90_RS00265 () | 37024..37245 | - | 222 | Protein_52 | DNA helicase | - |
| FDZ90_RS00270 () | 37279..40284 | - | 3006 | WP_096068432.1 | Tn3 family transposase TnpA_Tn3 | Transposase |
| FDZ90_RS00275 () | 40448..41005 | + | 558 | WP_001235713.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| FDZ90_RS00280 () | 41188..42048 | + | 861 | WP_000027057.1 | Beta-lactamase TEM | ARG |
| FDZ90_RS00285 () | 42195..43490 | - | 1296 | Protein_56 | UvrD-helicase domain-containing protein | - |
| FDZ90_RS00290 () | 43777..44817 | - | 1041 | WP_000101568.1 | DNA-binding protein | - |
| FDZ90_RS00295 () | 44979..45854 | - | 876 | WP_001097010.1 | DNA replication terminus site-binding protein | - |
| FDZ90_RS00300 () | 46181..46672 | - | 492 | WP_000139717.1 | hypothetical protein | - |
| FDZ90_RS00305 () | 46669..47538 | - | 870 | WP_000997323.1 | 3'-5' exonuclease | - |
| FDZ90_RS00310 () | 47543..48553 | - | 1011 | WP_000543934.1 | IS91 family transposase ISWz1 | Transposase |
| FDZ90_RS00315 () | 48556..49092 | - | 537 | WP_096068431.1 | hypothetical protein | - |
| FDZ90_RS00320 () | 49391..49672 | - | 282 | WP_000575657.1 | hypothetical protein | - |
| FDZ90_RS00325 () | 49934..50536 | + | 603 | WP_000278322.1 | hypothetical protein | - |
| FDZ90_RS00330 () | 50552..51004 | - | 453 | WP_000791469.1 | hypothetical protein | - |
| FDZ90_RS00335 () | 51171..51470 | - | 300 | WP_011872911.1 | hypothetical protein | - |
| FDZ90_RS00340 () | 51518..51760 | - | 243 | WP_000750746.1 | hypothetical protein | - |
| FDZ90_RS00345 () | 51765..52037 | - | 273 | WP_000787563.1 | MafI family immunity protein | - |
| FDZ90_RS00350 () | 52034..56188 | - | 4155 | WP_014342219.1 | Putative deoxyribonuclease RhsC | VF |
| FDZ90_RS00355 () | 56429..57154 | - | 726 | WP_000988732.1 | hypothetical protein | - |
| FDZ90_RS00360 () | 57268..57642 | - | 375 | WP_000868821.1 | hypothetical protein | - |
| FDZ90_RS00365 () | 57763..57879 | - | 117 | WP_000338626.1 | hypothetical protein | - |
| FDZ90_RS00370 () | 57889..58128 | - | 240 | WP_000714162.1 | permease | - |
| FDZ90_RS00375 () | 58201..58479 | - | 279 | WP_000268337.1 | hypothetical protein | - |
| FDZ90_RS00380 () | 58466..60193 | - | 1728 | WP_000122923.1 | toprim domain-containing protein | - |
| FDZ90_RS00385 () | 60371..60757 | - | 387 | WP_001077335.1 | hypothetical protein | - |
| FDZ90_RS00390 () | 60864..61010 | - | 147 | WP_001032042.1 | hypothetical protein | - |
| FDZ90_RS00395 () | 61215..62066 | - | 852 | WP_000595210.1 | hypothetical protein | - |
| FDZ90_RS00400 () | 62141..62698 | - | 558 | WP_000064431.1 | pyruvate dehydrogenase | - |
| FDZ90_RS00405 () | 62772..62990 | - | 219 | WP_000260293.1 | hypothetical protein | - |
| FDZ90_RS00410 () | 63004..63273 | - | 270 | WP_000184110.1 | hypothetical protein | - |
| FDZ90_RS00415 () | 63266..63871 | - | 606 | WP_000071870.1 | 5'-deoxynucleotidase | - |
| FDZ90_RS00420 () | 63943..64146 | - | 204 | WP_000050848.1 | hypothetical protein | - |
| FDZ90_RS00425 () | 64348..66801 | - | 2454 | WP_001187970.1 | phosphoadenosine phosphosulfate reductase | - |
| FDZ90_RS00430 () | 66889..67275 | - | 387 | WP_000042274.1 | hypothetical protein | - |
| FDZ90_RS00435 () | 67508..68062 | - | 555 | WP_001093868.1 | hypothetical protein | - |
| FDZ90_RS00440 () | 68136..68567 | - | 432 | WP_000687894.1 | hypothetical protein | - |
| FDZ90_RS00445 () | 68628..70253 | - | 1626 | WP_000201432.1 | DNA cytosine methyltransferase | - |
| FDZ90_RS00450 () | 70331..70633 | - | 303 | WP_000410925.1 | hypothetical protein | - |
| FDZ90_RS00455 () | 70711..71055 | - | 345 | WP_000209093.1 | hypothetical protein | - |
| FDZ90_RS00460 () | 71247..71624 | - | 378 | WP_001337696.1 | hypothetical protein | - |
| FDZ90_RS00465 () | 71669..71860 | - | 192 | WP_000651508.1 | hypothetical protein | - |
| FDZ90_RS00470 () | 71918..72217 | - | 300 | WP_000164429.1 | hypothetical protein | - |
| FDZ90_RS00475 () | 72198..72650 | - | 453 | WP_001176699.1 | hypothetical protein | - |
| FDZ90_RS00480 () | 72640..73029 | - | 390 | WP_000026577.1 | hypothetical protein | - |
| FDZ90_RS00485 () | 73091..73315 | - | 225 | WP_001102700.1 | 2Fe-2S ferredoxin-like protein | - |
| FDZ90_RS00490 () | 73381..74265 | - | 885 | WP_000477209.1 | hypothetical protein | - |
| FDZ90_RS00495 () | 74339..74839 | - | 501 | WP_000793769.1 | hypothetical protein | - |
| FDZ90_RS00500 () | 74930..75468 | - | 539 | Protein_99 | hypothetical protein | - |
| FDZ90_RS00505 () | 75733..76068 | - | 336 | WP_001071288.1 | hypothetical protein | - |
| FDZ90_RS00510 () | 76130..77926 | - | 1797 | WP_000039318.1 | VWA domain-containing protein | - |
| FDZ90_RS00515 () | 78011..79288 | - | 1278 | WP_000170086.1 | DUF3150 domain-containing protein | - |
| FDZ90_RS00520 () | 79488..80498 | - | 1011 | WP_000706865.1 | YqaJ viral recombinase family protein | - |
| FDZ90_RS00525 () | 80558..81547 | - | 990 | WP_096068430.1 | phage recombination protein Bet | - |
| FDZ90_RS00530 () | 81642..82172 | - | 531 | WP_000987165.1 | single-stranded DNA-binding protein | - |
| FDZ90_RS00535 () | 82233..83140 | - | 908 | Protein_106 | hypothetical protein | - |
| FDZ90_RS00540 () | 83144..84118 | - | 975 | WP_180821247.1 | CbbQ/NirQ/NorQ C-terminal domain-containing protein | - |
| FDZ90_RS00545 () | 84338..84523 | - | 186 | WP_001186917.1 | hypothetical protein | - |
| FDZ90_RS00550 () | 84827..85147 | - | 321 | WP_000547566.1 | hypothetical protein | - |
| FDZ90_RS00555 () | 85441..86082 | + | 642 | WP_000796664.1 | hypothetical protein | - |
| FDZ90_RS00560 () | 86205..87065 | + | 861 | WP_000709517.1 | hypothetical protein | - |
| FDZ90_RS00565 () | 87104..89914 | - | 2811 | WP_001909286.1 | conjugal transfer mating pair stabilization protein TraN | - |
| FDZ90_RS00570 () | 90018..91025 | - | 1008 | WP_000983283.1 | TraU family protein | - |
| FDZ90_RS00575 () | 91022..91693 | - | 672 | WP_001337754.1 | EAL domain-containing protein | - |
| FDZ90_RS00580 () | 91690..92955 | - | 1266 | WP_000621288.1 | conjugal transfer protein TraW | - |
| FDZ90_RS00585 () | 92918..93448 | - | 531 | WP_001010738.1 | S26 family signal peptidase | - |
| FDZ90_RS00590 () | 93445..93762 | - | 318 | WP_000351984.1 | hypothetical protein | - |
| FDZ90_RS00595 () | 93777..96224 | - | 2448 | WP_000637386.1 | type IV secretion system protein TraC | - |
| FDZ90_RS00600 () | 96221..96928 | - | 708 | WP_001259347.1 | DsbC family protein | - |
| FDZ90_RS00605 () | 97077..102608 | - | 5532 | WP_000606833.1 | DUF4165 domain-containing protein | - |
| FDZ90_RS00610 () | 102809..103201 | - | 393 | WP_000479535.1 | hypothetical protein | - |
| FDZ90_RS00615 () | 103205..103783 | - | 579 | WP_000793435.1 | type IV conjugative transfer system lipoprotein TraV | - |
| FDZ90_RS00620 () | 103780..105093 | - | 1314 | WP_024131605.1 | conjugal transfer protein TraB | - |
| FDZ90_RS00625 () | 105093..106010 | - | 918 | WP_000794249.1 | type-F conjugative transfer system secretin TraK | - |
| FDZ90_RS00630 () | 105994..106620 | - | 627 | WP_001049716.1 | hypothetical protein | - |
| FDZ90_RS00635 () | 106617..106898 | - | 282 | WP_000805625.1 | type IV conjugative transfer system protein TraL | - |
| FDZ90_RS00640 () | 107043..107420 | - | 378 | WP_000509509.1 | hypothetical protein | - |
| FDZ90_RS00645 () | 107420..107563 | - | 144 | WP_001275801.1 | hypothetical protein | - |
| FDZ90_RS00650 () | 107744..108406 | - | 663 | WP_001231463.1 | hypothetical protein | - |
| FDZ90_RS00655 () | 108406..108783 | - | 378 | WP_000869261.1 | hypothetical protein | - |
| FDZ90_RS00660 () | 108793..109239 | - | 447 | WP_000122506.1 | hypothetical protein | - |
| FDZ90_RS00665 () | 109249..109878 | - | 630 | WP_000743450.1 | DUF4400 domain-containing protein | - |
| FDZ90_RS00670 () | 109835..110419 | - | 585 | WP_000332866.1 | hypothetical protein | - |
| FDZ90_RS00675 () | 110430..112295 | - | 1866 | WP_000178856.1 | conjugative transfer system coupling protein TraD | - |
| FDZ90_RS00680 () | 112292..115270 | - | 2979 | WP_001337757.1 | hypothetical protein | Relaxase |
| FDZ90_RS00685 () | 115438..116055 | + | 618 | WP_001249396.1 | hypothetical protein | - |
| FDZ90_RS00690 () | 116037..116270 | + | 234 | WP_001191892.1 | hypothetical protein | - |
| FDZ90_RS00695 () | 116270..118462 | + | 2193 | WP_000366822.1 | DNA topoisomerase 3 | - |
| FDZ90_RS00700 () | 118477..118965 | + | 489 | WP_000468105.1 | hypothetical protein | - |
| FDZ90_RS00705 () | 119057..119356 | - | 300 | WP_000542259.1 | hypothetical protein | - |
| FDZ90_RS00710 () | 119568..120185 | - | 618 | WP_000464631.1 | hypothetical protein | - |
| FDZ90_RS00715 () | 120279..120497 | - | 219 | WP_000362482.1 | hypothetical protein | - |
| FDZ90_RS00720 () | 120703..121359 | - | 657 | WP_000268551.1 | hypothetical protein | - |
| FDZ90_RS00725 () | 121359..122786 | - | 1428 | WP_000936896.1 | DNA cytosine methyltransferase | - |
| FDZ90_RS00730 () | 122790..123290 | - | 501 | WP_000647189.1 | hypothetical protein | - |
| FDZ90_RS00735 () | 123299..123610 | - | 312 | WP_002210541.1 | hypothetical protein | - |
| FDZ90_RS00740 () | 123616..124047 | - | 432 | WP_005507681.1 | hypothetical protein | - |
| FDZ90_RS00745 () | 124115..124789 | - | 675 | WP_000344151.1 | thymidylate kinase | - |
| FDZ90_RS00750 () | 124764..125045 | - | 282 | WP_000044824.1 | hypothetical protein | - |
| FDZ90_RS00755 () | 125038..125415 | - | 378 | WP_001125905.1 | hypothetical protein | - |
| FDZ90_RS00760 () | 125734..125877 | + | 144 | WP_000939033.1 | hypothetical protein | - |
| FDZ90_RS00765 () | 125969..126604 | + | 636 | WP_000074431.1 | N-6 DNA methylase | - |
| FDZ90_RS00770 () | 126657..126929 | - | 273 | WP_000703827.1 | helix-turn-helix domain-containing protein | - |
| FDZ90_RS00775 () | 126978..128159 | - | 1182 | WP_001207227.1 | ParB/RepB/Spo0J family partition protein | - |
| FDZ90_RS00780 () | 128163..128948 | - | 786 | WP_001151304.1 | Sporulation initiation inhibitor protein Soj | VF |
| FDZ90_RS00785 () | 129122..129432 | - | 311 | Protein_156 | hypothetical protein | - |
| FDZ90_RS00790 () | 129739..130554 | + | 816 | WP_001043260.1 | Dihydropteroate synthase | ARG |
| FDZ90_RS00795 () | 130641..130883 | + | 243 | Protein_158 | phosphoglucosamine mutase | - |
| FDZ90_RS00800 () | 130837..131088 | - | 252 | WP_001445143.1 | hypothetical protein | - |
| FDZ90_RS00805 () | 131119..132612 | - | 1494 | WP_001120888.1 | IS91 family transposase ISVsa3 | Transposase |
| FDZ90_RS00810 () | 132823..133047 | - | 225 | WP_000743213.1 | hypothetical protein | - |
| FDZ90_RS00815 () | 133044..133781 | - | 738 | WP_001366550.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| FDZ90_RS00820 () | 134267..134407 | - | 141 | WP_001044210.1 | hypothetical protein | - |
| FDZ90_RS00825 () | 134413..135117 | - | 705 | WP_001067855.1 | IS6 family transposase IS26 | Transposase |
| FDZ90_RS00830 () | 135182..135361 | - | 180 | Protein_165 | helix-turn-helix transcriptional regulator | - |
| FDZ90_RS00835 () | 135786..135914 | + | 129 | WP_002210551.1 | hypothetical protein | - |
| FDZ90_RS00840 () | 136088..136620 | - | 533 | Protein_167 | Phospholipase D | VF |
| FDZ90_RS00845 () | 136620..137614 | - | 995 | Protein_168 | Type IV secretion system protein VirB11 | VF |
| FDZ90_RS00850 () | 137656..138815 | - | 1160 | Protein_169 | Protein virB10 | VF |
| FDZ90_RS00855 () | 138815..139699 | - | 885 | WP_000735066.1 | Type IV secretion system protein virB9 | VF |
| FDZ90_RS00860 () | 139710..139934 | - | 225 | WP_000700870.1 | Type IV secretion system protein virB8 | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|