MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 129573 bp
Accession: NZ_CP039896 Location: 1..129573 Organism: Rhizobium pusense strain CFBP5875 Replicon: plasmid pAtCFBP5875
Accession: NZ_CP039896 Location: 1..129573 Organism: Rhizobium pusense strain CFBP5875 Replicon: plasmid pAtCFBP5875
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CFBP5875_RS23260 () | 1..1224 | + | 1224 | WP_167497282.1 | plasmid partitioning protein RepA | - |
| CFBP5875_RS23265 () | 1221..2246 | + | 1026 | WP_137070073.1 | plasmid partitioning protein RepB | - |
| CFBP5875_RS23270 () | 2443..3657 | + | 1215 | WP_137070074.1 | replication initiation protein RepC | - |
| CFBP5875_RS23275 () | 3739..4512 | + | 774 | Protein_3 | tyrosine-type recombinase/integrase | - |
| CFBP5875_RS23280 () | 4528..4941 | - | 414 | WP_137070075.1 | type II toxin-antitoxin system VapC family toxin | - |
| CFBP5875_RS23285 () | 4938..5186 | - | 249 | WP_006699336.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| CFBP5875_RS23290 () | 5535..6083 | - | 549 | WP_137070076.1 | isocitrate lyase/phosphoenolpyruvate mutase family protein | - |
| CFBP5875_RS23295 () | 6080..7271 | - | 1192 | Protein_7 | bifunctional transcriptional activator/DNA repair protein Ada | - |
| CFBP5875_RS23300 () | 8387..8857 | + | 471 | WP_006699334.1 | hypothetical protein | - |
| CFBP5875_RS23305 () | 8929..9695 | + | 767 | WP_137070077.1 | IS5 family transposase | - |
| CFBP5875_RS23310 () | 10009..10412 | - | 404 | Protein_10 | AAA family ATPase | - |
| CFBP5875_RS23315 () | 10497..11642 | - | 1146 | WP_167497283.1 | site-specific integrase | - |
| CFBP5875_RS23320 () | 12037..12681 | - | 645 | WP_113731735.1 | hypothetical protein | - |
| CFBP5875_RS23325 () | 12719..13141 | - | 423 | WP_137070079.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| CFBP5875_RS23330 () | 13138..13404 | - | 267 | WP_113731730.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin Detail |
| CFBP5875_RS23335 () | 13492..14625 | - | 1134 | WP_137070080.1 | site-specific integrase | - |
| CFBP5875_RS23340 () | 14750..15703 | + | 954 | WP_137070081.1 | DUF1403 family protein | - |
| CFBP5875_RS23345 () | 15700..16416 | + | 717 | WP_137070082.1 | SMC-Scp complex subunit ScpB | - |
| CFBP5875_RS23350 () | 16426..17073 | - | 648 | WP_137070083.1 | hypothetical protein | - |
| CFBP5875_RS23360 () | 17276..17886 | - | 611 | Protein_19 | IS21 family transposase | - |
| CFBP5875_RS23365 () | 18616..19089 | - | 474 | WP_137070084.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CFBP5875_RS23370 () | 19134..20648 | + | 1515 | WP_137070085.1 | FAD-dependent oxidoreductase | - |
| CFBP5875_RS23375 () | 20645..21613 | + | 969 | WP_137070086.1 | zinc-binding alcohol dehydrogenase family protein | - |
| CFBP5875_RS23380 () | 21615..22844 | + | 1230 | WP_137070087.1 | MFS transporter | - |
| CFBP5875_RS23385 () | 22916..24118 | + | 1203 | WP_137070088.1 | patatin-like phospholipase family protein | - |
| CFBP5875_RS23395 () | 24541..25394 | + | 854 | Protein_25 | LysR family transcriptional regulator | - |
| CFBP5875_RS23405 () | 26051..26581 | - | 531 | WP_137070090.1 | NUDIX domain-containing protein | - |
| CFBP5875_RS23415 () | 27039..27761 | - | 723 | WP_137070092.1 | hypothetical protein | - |
| CFBP5875_RS23420 () | 27976..29325 | - | 1350 | WP_137070093.1 | NADP-specific glutamate dehydrogenase | - |
| CFBP5875_RS23440 () | 31432..31602 | - | 171 | Protein_30 | MBL fold metallo-hydrolase | - |
| CFBP5875_RS23445 () | 31776..32603 | - | 828 | WP_137070095.1 | IclR family transcriptional regulator | - |
| CFBP5875_RS23450 () | 32659..34113 | + | 1455 | WP_137070096.1 | NAD-dependent succinate-semialdehyde dehydrogenase | - |
| CFBP5875_RS23455 () | 34134..35294 | + | 1161 | WP_137070097.1 | iron-containing alcohol dehydrogenase | - |
| CFBP5875_RS23460 () | 35340..36131 | + | 792 | WP_052821421.1 | N-acyl homoserine lactonase family protein | - |
| CFBP5875_RS23465 () | 36652..37788 | + | 1137 | WP_046802460.1 | acyl-CoA dehydrogenase family protein | - |
| CFBP5875_RS23470 () | 37785..38927 | + | 1143 | WP_046802459.1 | iron-containing alcohol dehydrogenase | - |
| CFBP5875_RS23475 () | 38924..40069 | + | 1146 | WP_137070098.1 | CoA transferase | - |
| CFBP5875_RS23480 () | 40146..40796 | + | 651 | WP_052760297.1 | TetR/AcrR family transcriptional regulator | - |
| CFBP5875_RS23490 () | 41026..41433 | + | 408 | WP_112831769.1 | transposase | - |
| CFBP5875_RS23495 () | 41430..41780 | + | 351 | WP_112831771.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| CFBP5875_RS23500 () | 41840..43477 | + | 1638 | WP_112831773.1 | IS66 family transposase | - |
| CFBP5875_RS23510 () | 43581..45368 | - | 1788 | WP_137070099.1 | AMP-binding protein | - |
| CFBP5875_RS23515 () | 45562..46701 | + | 1140 | WP_167497285.1 | CoA transferase | - |
| CFBP5875_RS23520 () | 46759..47892 | + | 1134 | WP_052760294.1 | glycoside hydrolase family 88 protein | - |
| CFBP5875_RS23525 () | 47904..48659 | + | 756 | WP_046802457.1 | ABC transporter ATP-binding protein | - |
| CFBP5875_RS23530 () | 48652..49395 | + | 744 | WP_046802456.1 | ABC transporter ATP-binding protein | - |
| CFBP5875_RS23535 () | 49420..50625 | + | 1206 | WP_046802455.1 | ABC transporter substrate-binding protein | - |
| CFBP5875_RS23540 () | 50693..51580 | + | 888 | WP_082186143.1 | branched-chain amino acid ABC transporter permease | - |
| CFBP5875_RS23545 () | 51588..52571 | + | 984 | WP_082186308.1 | branched-chain amino acid ABC transporter permease | - |
| CFBP5875_RS23550 () | 52596..54029 | + | 1434 | WP_046802312.1 | aldehyde dehydrogenase family protein | - |
| CFBP5875_RS23555 () | 54042..54788 | + | 747 | WP_046802313.1 | electron transfer flavoprotein subunit beta/FixA family protein | - |
| CFBP5875_RS23560 () | 54813..55751 | + | 939 | WP_062654024.1 | electron transfer flavoprotein subunit alpha/FixB family protein | - |
| CFBP5875_RS23565 () | 55748..57412 | + | 1665 | WP_062654032.1 | electron transfer flavoprotein-ubiquinone oxidoreductase | - |
| CFBP5875_RS23570 () | 57575..58093 | + | 519 | WP_137070101.1 | transcriptional regulator TraR | - |
| CFBP5875_RS23575 () | 58161..59161 | + | 1001 | Protein_55 | helix-turn-helix domain-containing protein | - |
| CFBP5875_RS23580 () | 59411..60673 | - | 1263 | WP_011982789.1 | IS110 family transposase | - |
| CFBP5875_RS23585 () | 60697..61161 | + | 465 | WP_137070102.1 | integrase core domain-containing protein | - |
| CFBP5875_RS23590 () | 61256..62095 | - | 840 | WP_072492732.1 | sugar phosphate isomerase/epimerase | - |
| CFBP5875_RS23595 () | 62357..63118 | - | 762 | WP_167373956.1 | amino acid ABC transporter ATP-binding protein | - |
| CFBP5875_RS23600 () | 63145..64068 | - | 924 | WP_072492733.1 | amino acid ABC transporter permease | - |
| CFBP5875_RS23605 () | 64159..65004 | - | 846 | WP_072492734.1 | ABC transporter substrate-binding protein | - |
| CFBP5875_RS23610 () | 65265..66353 | + | 1089 | WP_052821141.1 | LacI family transcriptional regulator | - |
| CFBP5875_RS23615 () | 66399..67349 | - | 951 | WP_137070103.1 | ornithine cyclodeaminase | - |
| CFBP5875_RS23620 () | 67360..68070 | - | 711 | WP_137070104.1 | UTRA domain-containing protein | - |
| CFBP5875_RS23625 () | 68083..69084 | - | 1002 | WP_137070105.1 | SIS domain-containing protein | - |
| CFBP5875_RS23630 () | 69215..70102 | + | 888 | WP_052821160.1 | ribokinase | - |
| CFBP5875_RS23635 () | 70220..71224 | + | 1005 | WP_052821137.1 | TRAP transporter substrate-binding protein DctP | - |
| CFBP5875_RS23640 () | 71304..71771 | + | 468 | WP_137070106.1 | TRAP transporter small permease | - |
| CFBP5875_RS23645 () | 71768..73042 | + | 1275 | WP_137070107.1 | TRAP transporter large permease | - |
| CFBP5875_RS23650 () | 73124..73828 | - | 705 | WP_137070108.1 | IS6 family transposase | - |
| CFBP5875_RS23655 () | 73913..74872 | + | 960 | WP_137070109.1 | aldo/keto reductase | - |
| CFBP5875_RS23660 () | 75472..76335 | - | 864 | WP_137070110.1 | LysR family transcriptional regulator | - |
| CFBP5875_RS23665 () | 76544..77544 | + | 1001 | Protein_73 | tripartite tricarboxylate transporter substrate binding protein | - |
| CFBP5875_RS23670 () | 77654..78724 | + | 1071 | WP_137070133.1 | Ldh family oxidoreductase | - |
| CFBP5875_RS23675 () | 78794..79261 | + | 468 | WP_137070111.1 | tripartite tricarboxylate transporter TctB family protein | - |
| CFBP5875_RS23680 () | 79265..80773 | + | 1509 | WP_137070112.1 | tripartite tricarboxylate transporter permease | - |
| CFBP5875_RS23685 () | 80941..81645 | + | 705 | WP_137070108.1 | IS6 family transposase | - |
| CFBP5875_RS23690 () | 81727..83001 | - | 1275 | WP_137070107.1 | TRAP transporter large permease | - |
| CFBP5875_RS23695 () | 82998..83465 | - | 468 | WP_137070106.1 | TRAP transporter small permease | - |
| CFBP5875_RS23700 () | 83545..84549 | - | 1005 | WP_052821137.1 | TRAP transporter substrate-binding protein DctP | - |
| CFBP5875_RS23705 () | 84667..85554 | - | 888 | WP_052821160.1 | ribokinase | - |
| CFBP5875_RS23710 () | 85685..86686 | + | 1002 | WP_137070105.1 | SIS domain-containing protein | - |
| CFBP5875_RS23715 () | 86699..87409 | + | 711 | WP_137070104.1 | UTRA domain-containing protein | - |
| CFBP5875_RS23720 () | 87420..88370 | + | 951 | WP_137070103.1 | ornithine cyclodeaminase | - |
| CFBP5875_RS23725 () | 88416..89504 | - | 1089 | WP_052821141.1 | LacI family transcriptional regulator | - |
| CFBP5875_RS23730 () | 89765..90610 | + | 846 | WP_072492734.1 | ABC transporter substrate-binding protein | - |
| CFBP5875_RS23735 () | 90701..91624 | + | 924 | WP_072492733.1 | amino acid ABC transporter permease | - |
| CFBP5875_RS23740 () | 91651..92412 | + | 762 | WP_167373956.1 | amino acid ABC transporter ATP-binding protein | - |
| CFBP5875_RS23745 () | 92674..93513 | + | 840 | WP_072492732.1 | sugar phosphate isomerase/epimerase | - |
| CFBP5875_RS23750 () | 93608..94072 | - | 465 | WP_137070102.1 | integrase core domain-containing protein | - |
| CFBP5875_RS23755 () | 94096..95358 | + | 1263 | WP_011982789.1 | IS110 family transposase | - |
| CFBP5875_RS23760 () | 95608..96608 | - | 1001 | Protein_92 | helix-turn-helix domain-containing protein | - |
| CFBP5875_RS23765 () | 96676..97194 | - | 519 | WP_137070101.1 | transcriptional regulator TraR | - |
| CFBP5875_RS23770 () | 97388..98035 | + | 648 | Protein_94 | IS6 family transposase | - |
| CFBP5875_RS23775 () | 98132..98851 | - | 720 | WP_137070113.1 | hypothetical protein | - |
| CFBP5875_RS23780 () | 99012..99884 | + | 873 | WP_137070114.1 | LysR family transcriptional regulator | - |
| CFBP5875_RS23785 () | 99994..100677 | - | 684 | Protein_97 | IS6 family transposase | - |
| CFBP5875_RS23790 () | 100749..100937 | - | 189 | Protein_98 | IS110 family transposase | - |
| CFBP5875_RS24155 () | 101492..101779 | + | 288 | WP_080823476.1 | hypothetical protein | - |
| CFBP5875_RS23800 () | 101785..104208 | + | 2424 | WP_137070115.1 | EAL domain-containing protein | - |
| CFBP5875_RS23805 () | 104346..104573 | - | 228 | Protein_101 | IS66 family insertion sequence element accessory protein TnpB | - |
| CFBP5875_RS23815 () | 105146..105898 | - | 753 | WP_137070117.1 | IS6 family transposase | - |
| CFBP5875_RS23820 () | 105897..106079 | + | 183 | WP_137070118.1 | hypothetical protein | - |
| CFBP5875_RS23825 () | 106131..107131 | + | 1001 | Protein_104 | helix-turn-helix domain-containing protein | - |
| CFBP5875_RS23830 () | 107381..108643 | - | 1263 | WP_011982789.1 | IS110 family transposase | - |
| CFBP5875_RS24160 () | 108853..109143 | + | 291 | Protein_106 | transposase | - |
| CFBP5875_RS23840 () | 109220..109879 | - | 660 | Protein_107 | ISL3 family transposase | - |
| CFBP5875_RS23845 () | 109928..110314 | - | 387 | WP_137070120.1 | transposase family protein | - |
| CFBP5875_RS23850 () | 110483..110772 | + | 290 | Protein_109 | transposase | - |
| CFBP5875_RS23855 () | 111376..112031 | + | 656 | Protein_110 | IS110 family transposase | - |
| CFBP5875_RS23860 () | 112742..113465 | - | 724 | Protein_111 | IS5 family transposase | - |
| CFBP5875_RS23865 () | 113624..116275 | + | 2652 | WP_137070121.1 | DNA ligase D | - |
| CFBP5875_RS23870 () | 116288..116563 | - | 276 | WP_137070122.1 | hypothetical protein | - |
| CFBP5875_RS23875 () | 116574..116873 | - | 300 | WP_137070123.1 | DUF982 domain-containing protein | - |
| CFBP5875_RS23880 () | 116942..117418 | - | 477 | WP_137070124.1 | Hsp20 family protein | - |
| CFBP5875_RS23885 () | 117589..118620 | - | 1032 | WP_137070125.1 | non-homologous end-joining DNA ligase | - |
| CFBP5875_RS23890 () | 118617..119429 | - | 813 | WP_107341567.1 | Ku protein | - |
| CFBP5875_RS23895 () | 119441..120340 | - | 900 | WP_137070126.1 | Ku protein | - |
| CFBP5875_RS23900 () | 120541..120717 | + | 177 | WP_006699349.1 | hypothetical protein | - |
| CFBP5875_RS23905 () | 120726..121502 | + | 777 | WP_137070127.1 | exodeoxyribonuclease III | - |
| CFBP5875_RS23910 () | 122059..122607 | + | 549 | WP_108082033.1 | TRAP transporter small permease subunit | - |
| CFBP5875_RS23915 () | 122622..124130 | + | 1509 | WP_167497286.1 | TRAP transporter large permease subunit | - |
| CFBP5875_RS23920 () | 124213..125325 | + | 1113 | WP_022557687.1 | TRAP transporter substrate-binding protein | - |
| CFBP5875_RS23925 () | 125392..126024 | - | 633 | WP_137070128.1 | response regulator transcription factor | - |
| CFBP5875_RS23930 () | 126021..127418 | - | 1398 | WP_137070129.1 | cache domain-containing protein | - |
| CFBP5875_RS23935 () | 127535..127939 | - | 405 | WP_064264062.1 | GFA family protein | - |
| CFBP5875_RS23940 () | 127997..128896 | - | 900 | WP_137070130.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|