MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 89919 bp
Accession: NZ_CP039696 Location: 1..89919 Organism: Novosphingobium sp. ABRDHK2 Replicon: plasmid pABRDHK21
Accession: NZ_CP039696 Location: 1..89919 Organism: Novosphingobium sp. ABRDHK2 Replicon: plasmid pABRDHK21
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FA702_RS23005 () | 5..274 | + | 270 | WP_210417664.1 | hypothetical protein | VF |
| FA702_RS17760 () | 238..1155 | + | 918 | WP_210417665.1 | hypothetical protein | - |
| FA702_RS17770 () | 1267..1476 | - | 210 | WP_136957508.1 | hypothetical protein | - |
| FA702_RS17775 () | 1508..1833 | - | 326 | Protein_3 | XRE family transcriptional regulator | - |
| FA702_RS17780 () | 1881..2198 | - | 318 | Protein_4 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| FA702_RS17785 () | 2619..2974 | + | 356 | Protein_5 | sigma-70 family RNA polymerase sigma factor | - |
| FA702_RS17790 () | 2971..3356 | - | 386 | Protein_6 | Blue-light-activated protein | VF |
| FA702_RS17795 () | 3356..3570 | - | 215 | Protein_7 | hypothetical protein | - |
| FA702_RS17800 () | 3626..4627 | - | 1002 | WP_136957509.1 | GGDEF domain-containing protein | - |
| FA702_RS17805 () | 4655..4998 | - | 344 | Protein_9 | IS6 family transposase IS6100 | Transposase |
| FA702_RS17810 () | 5170..6147 | - | 978 | WP_136957510.1 | ExeA family protein | - |
| FA702_RS17815 () | 6147..7799 | - | 1653 | WP_136957511.1 | IS481 family transposase ISAzs36 | Transposase |
| FA702_RS17820 () | 7792..8387 | - | 596 | Protein_12 | IS481 family transposase ISAzs36 | Transposase |
| FA702_RS17825 () | 8554..9246 | + | 693 | WP_136957512.1 | hypothetical protein | - |
| FA702_RS17830 () | 9353..9928 | + | 576 | WP_168196121.1 | hypothetical protein | - |
| FA702_RS17835 () | 10115..10543 | - | 429 | Protein_15 | IS6 family transposase IS6100 | Transposase |
| FA702_RS23010 () | 10455..10931 | - | 477 | WP_210417667.1 | hypothetical protein | - |
| FA702_RS17845 () | 11095..13296 | + | 2202 | WP_036527622.1 | sugar nucleotide-binding protein | - |
| FA702_RS17850 () | 13350..14648 | - | 1299 | WP_168196122.1 | hypothetical protein | - |
| FA702_RS17855 () | 14905..16428 | - | 1524 | WP_136957515.1 | phosphoesterase | - |
| FA702_RS17860 () | 16507..17271 | - | 765 | WP_006949122.1 | IS6 family transposase IS6100 | Transposase |
| FA702_RS17870 () | 17503..19725 | - | 2223 | WP_136957517.1 | TonB-dependent receptor | - |
| FA702_RS17875 () | 20192..20653 | + | 462 | WP_058456839.1 | TetR family transcriptional regulator | - |
| FA702_RS17880 () | 20708..21553 | - | 846 | WP_006949666.1 | IS21 family transposase ISRel5 | Transposase |
| FA702_RS22845 () | 21550..22389 | - | 840 | WP_168196123.1 | IS21 family transposase ISBj11 | Transposase |
| FA702_RS17895 () | 22366..23130 | + | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| FA702_RS22850 () | 23270..23422 | - | 153 | WP_006949649.1 | hypothetical protein | - |
| FA702_RS17900 () | 23678..23986 | + | 309 | WP_020819813.1 | hypothetical protein | - |
| FA702_RS17910 () | 24384..24794 | + | 411 | Protein_28 | Type IV secretion system protein virB1 | VF |
| FA702_RS17915 () | 24849..25613 | - | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| FA702_RS17925 () | 25671..25997 | + | 327 | Protein_30 | hypothetical protein | - |
| FA702_RS22855 () | 25994..26167 | + | 174 | WP_168196124.1 | hypothetical protein | - |
| FA702_RS17935 () | 26352..27056 | + | 705 | WP_136957520.1 | SprT-like domain-containing protein | - |
| FA702_RS17940 () | 27075..27296 | + | 222 | WP_136957521.1 | hypothetical protein | - |
| FA702_RS17945 () | 27637..27990 | + | 354 | WP_136957522.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| FA702_RS17950 () | 27987..28514 | + | 528 | WP_136957523.1 | arsenate reductase ArsC | - |
| FA702_RS17955 () | 28504..28932 | + | 429 | WP_136957524.1 | arsenate reductase (glutaredoxin) | - |
| FA702_RS17960 () | 28940..30016 | + | 1077 | WP_136957525.1 | ACR3 family arsenite efflux transporter | - |
| FA702_RS17965 () | 30013..30759 | + | 747 | WP_136957526.1 | arsenical resistance protein ArsH | - |
| FA702_RS17970 () | 31014..32090 | + | 1077 | WP_136957527.1 | zeta toxin family protein | - |
| FA702_RS17975 () | 32239..32943 | + | 705 | WP_136957528.1 | DNA adenine methylase | - |
| FA702_RS17980 () | 33034..33318 | + | 285 | WP_136957529.1 | hypothetical protein | - |
| FA702_RS22860 () | 33327..33476 | - | 150 | WP_168196125.1 | hypothetical protein | - |
| FA702_RS17985 () | 33624..33869 | - | 246 | WP_136957530.1 | helix-turn-helix domain-containing protein | - |
| FA702_RS17990 () | 33904..34296 | + | 393 | WP_136957531.1 | hypothetical protein | - |
| FA702_RS17995 () | 34298..37033 | - | 2736 | Protein_45 | hypothetical protein | - |
| FA702_RS18000 () | 37143..38138 | - | 996 | WP_136957532.1 | Tyrosine recombinase XerD | VF |
| FA702_RS18005 () | 38135..39079 | - | 945 | WP_136957533.1 | IS91 family transposase ISShvi3 | Transposase |
| FA702_RS18010 () | 39076..40290 | - | 1215 | WP_136957534.1 | tyrosine-type recombinase/integrase | - |
| FA702_RS18015 () | 40417..41061 | + | 645 | WP_136957535.1 | hypothetical protein | - |
| FA702_RS18020 () | 41067..41504 | + | 438 | WP_136957578.1 | hypothetical protein | - |
| FA702_RS18025 () | 41505..41885 | - | 381 | WP_210417666.1 | hypothetical protein | - |
| FA702_RS18030 () | 42059..42688 | - | 630 | Protein_52 | DUF1738 domain-containing protein | - |
| FA702_RS18035 () | 42707..42958 | - | 252 | WP_136957536.1 | conjugal transfer protein | - |
| FA702_RS18040 () | 42955..45135 | - | 2181 | WP_136957537.1 | DNA topoisomerase 3 | - |
| FA702_RS18045 () | 45140..45673 | - | 534 | WP_136957538.1 | conjugative transfer signal peptidase TraF | - |
| FA702_RS18050 () | 45670..47562 | - | 1893 | WP_136957539.1 | Conjugal transfer protein TraG | VF |
| FA702_RS18055 () | 47585..49903 | - | 2319 | WP_136957540.1 | Protein TraI | Relaxase |
| FA702_RS18060 () | 49920..50306 | - | 387 | WP_136957541.1 | conjugal transfer protein TraJ | - |
| FA702_RS18065 () | 50628..50996 | + | 369 | WP_136957542.1 | hypothetical protein | - |
| FA702_RS18070 () | 50993..51718 | + | 726 | WP_136957543.1 | conjugal transfer protein TraL | - |
| FA702_RS18075 () | 51718..52158 | + | 441 | WP_136957544.1 | conjugal transfer protein TraM | - |
| FA702_RS18080 () | 52175..52807 | - | 633 | WP_136957545.1 | KfrC | - |
| FA702_RS18085 () | 53135..54166 | - | 1032 | WP_136957546.1 | ParB/RepB/Spo0J family partition protein | - |
| FA702_RS18090 () | 54169..54915 | - | 747 | WP_136957579.1 | Chromosome-partitioning ATPase Soj | VF |
| FA702_RS18095 () | 54915..55211 | - | 297 | WP_136957547.1 | transcriptional regulator | - |
| FA702_RS18100 () | 55204..55533 | - | 330 | WP_136957548.1 | KleE protein | - |
| FA702_RS18105 () | 55639..55902 | - | 264 | WP_136957549.1 | KorC repressor protein | - |
| FA702_RS18110 () | 56007..56366 | - | 360 | WP_136957550.1 | antirestriction protein | - |
| FA702_RS18115 () | 56759..57532 | - | 774 | WP_136957551.1 | winged helix-turn-helix domain-containing protein | - |
| FA702_RS18125 () | 58470..58871 | + | 402 | WP_136957553.1 | helix-turn-helix domain-containing protein | - |
| FA702_RS18130 () | 58978..59943 | + | 966 | WP_136957554.1 | Type IV secretion system protein PtlH | VF |
| FA702_RS18135 () | 59957..60337 | + | 381 | WP_136957555.1 | TrbC/VirB2 family protein | - |
| FA702_RS18140 () | 60355..60687 | + | 333 | WP_136957556.1 | conjugal transfer protein TrbD | - |
| FA702_RS18145 () | 60684..63263 | + | 2580 | WP_136957557.1 | VirB4 family type IV secretion/conjugal transfer ATPase | - |
| FA702_RS18150 () | 63250..63966 | + | 717 | WP_136957558.1 | conjugal transfer protein TrbF | - |
| FA702_RS18155 () | 63984..64970 | + | 987 | WP_136957559.1 | P-type conjugative transfer protein TrbG | - |
| FA702_RS18160 () | 64973..65749 | + | 777 | WP_136957560.1 | SPOR domain-containing protein | - |
| FA702_RS18165 () | 65780..67120 | + | 1341 | WP_136957580.1 | Type IV secretion system protein virB10 | VF |
| FA702_RS18170 () | 67146..67901 | + | 756 | WP_136957561.1 | P-type conjugative transfer protein TrbJ | - |
| FA702_RS18175 () | 67910..68146 | + | 237 | WP_136957562.1 | EexN family lipoprotein | - |
| FA702_RS18180 () | 68157..69881 | + | 1725 | WP_136957563.1 | P-type conjugative transfer protein TrbL | - |
| FA702_RS18185 () | 69884..71002 | + | 1119 | WP_136957564.1 | hypothetical protein | VF |
| FA702_RS18190 () | 71023..71322 | - | 300 | WP_136957565.1 | hypothetical protein | - |
| FA702_RS18195 () | 71315..71557 | - | 243 | WP_013041566.1 | hypothetical protein | - |
| FA702_RS18200 () | 71557..71883 | - | 327 | WP_006964370.1 | helix-turn-helix domain-containing protein | Antitoxin Detail |
| FA702_RS18205 () | 71880..72254 | - | 375 | WP_136957566.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| FA702_RS18210 () | 72681..73037 | + | 357 | WP_136957567.1 | sigma-70 family RNA polymerase sigma factor | - |
| FA702_RS18215 () | 73034..73420 | - | 387 | WP_136957568.1 | Blue-light-activated protein | VF |
| FA702_RS18220 () | 73420..73695 | - | 276 | WP_136957569.1 | hypothetical protein | - |
| FA702_RS18225 () | 73692..74693 | - | 1002 | WP_136957509.1 | GGDEF domain-containing protein | - |
| FA702_RS18230 () | 74722..75066 | - | 345 | Protein_91 | IS6 family transposase IS6100 | Transposase |
| FA702_RS18235 () | 75238..76215 | - | 978 | WP_136957510.1 | ExeA family protein | - |
| FA702_RS18240 () | 76215..77867 | - | 1653 | WP_136957511.1 | IS481 family transposase ISAzs36 | Transposase |
| FA702_RS18245 () | 77860..78456 | - | 597 | WP_136957570.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| FA702_RS18250 () | 78623..79315 | + | 693 | WP_136957512.1 | hypothetical protein | - |
| FA702_RS18255 () | 79422..79997 | + | 576 | WP_168196121.1 | hypothetical protein | - |
| FA702_RS18260 () | 80184..80612 | - | 429 | Protein_97 | IS6 family transposase IS6100 | Transposase |
| FA702_RS23015 () | 80524..81000 | - | 477 | WP_210417667.1 | hypothetical protein | - |
| FA702_RS18270 () | 81164..83365 | + | 2202 | WP_036527622.1 | sugar nucleotide-binding protein | - |
| FA702_RS18275 () | 83419..84012 | - | 594 | WP_136957571.1 | hypothetical protein | - |
| FA702_RS18280 () | 83997..84743 | - | 747 | WP_168196126.1 | hypothetical protein | - |
| FA702_RS18285 () | 84973..85305 | - | 333 | WP_136957573.1 | hypothetical protein | - |
| FA702_RS18290 () | 85302..85592 | - | 291 | WP_136957574.1 | hypothetical protein | - |
| FA702_RS18295 () | 85605..86234 | - | 630 | WP_136957575.1 | hypothetical protein | - |
| FA702_RS18300 () | 86595..87338 | - | 744 | WP_136957576.1 | IS6 family transposase IS6100 | Transposase |
| FA702_RS18310 () | 87570..88439 | - | 870 | WP_136957577.1 | TonB-dependent receptor | - |
| FA702_RS18315 () | 88977..89771 | - | 795 | WP_136957581.1 | TonB-dependent receptor plug domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|