MGE detailed information
MGE type: Prophage MGE length: 56317 bp
Accession: NZ_CP039502 Location: 1982993..2039309 Organism: Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 Replicon: chromosome
Accession: NZ_CP039502 Location: 1982993..2039309 Organism: Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SEEB0189_RS09885 () | 1978368..1978889 | + | 522 | WP_000022510.1 | crossover junction endodeoxyribonuclease RuvC | - |
| SEEB0189_RS09890 () | 1978920..1980416 | + | 1497 | WP_000974705.1 | substrate-binding domain-containing protein | - |
| SEEB0189_RS09895 () | 1980516..1981112 | - | 597 | WP_020839276.1 | YebB family permuted papain-like enzyme | - |
| SEEB0189_RS09900 () | 1981321..1982013 | + | 693 | WP_000227320.1 | hypothetical protein | - |
| SEEB0189_RS09905 () | 1982373..1982984 | + | 612 | WP_000580335.1 | Holliday junction branch migration protein RuvA | - |
| SEEB0189_RS09910 () | 1982993..1984003 | + | 1011 | WP_000568504.1 | Holliday junction branch migration DNA helicase RuvB | - |
| SEEB0189_RS09915 () | 1984082..1984867 | - | 786 | WP_000571508.1 | hypothetical protein | VF |
| SEEB0189_RS09920 () | 1984864..1985619 | - | 756 | WP_000203023.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| SEEB0189_RS09925 () | 1985698..1986642 | + | 945 | WP_000939597.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| SEEB0189_RS09930 () | 1986658..1987977 | + | 1320 | WP_001184032.1 | murein DD-endopeptidase MepM | - |
| SEEB0189_RS09935 () | 1988094..1989065 | + | 972 | WP_000448401.1 | Lipid A biosynthesis myristoyltransferase | VF |
| SEEB0189_RS09940 () | 1989138..1990580 | - | 1443 | WP_000091156.1 | pyruvate kinase | - |
| SEEB0189_RS09945 () | 1990704..1991573 | - | 870 | WP_020839277.1 | MurR/RpiR family transcriptional regulator | - |
| SEEB0189_RS09950 () | 1991915..1993390 | + | 1476 | WP_020839278.1 | glucose-6-phosphate dehydrogenase | - |
| SEEB0189_RS09955 () | 1993625..1995436 | + | 1812 | WP_020839279.1 | phosphogluconate dehydratase | - |
| SEEB0189_RS09960 () | 1995474..1996115 | + | 642 | WP_000800494.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| SEEB0189_RS09965 () | 1996215..1997393 | - | 1179 | WP_000173430.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| SEEB0189_RS09970 () | 1997524..1997814 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| SEEB0189_RS09975 () | 1997882..1998235 | + | 354 | WP_001042123.1 | protein YebF | - |
| SEEB0189_RS09980 () | 1998329..1998988 | + | 660 | WP_020839280.1 | tellurite resistance TerB family protein | - |
| SEEB0189_RS09985 () | 1999202..2001253 | + | 2052 | WP_000936997.1 | oligopeptidase B | - |
| SEEB0189_RS09990 () | 2001290..2001988 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| SEEB0189_RS09995 () | 2002012..2002668 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| SEEB0189_RS10000 () | 2002776..2003006 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| SEEB0189_RS10005 () | 2003144..2003518 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| SEEB0189_RS10010 () | 2003519..2004394 | + | 876 | WP_020839281.1 | copper homeostasis membrane protein CopD | - |
| SEEB0189_RS10015 () | 2004411..2004764 | + | 354 | WP_000722367.1 | YebY family protein | - |
| - | 2004864..2005009 | - | 146 | - | - | Antitoxin Detail |
| - | 2004904..2005007 | + | 104 | - | - | Toxin Detail |
| SEEB0189_RS10020 () | 2005138..2006060 | - | 923 | Protein_1871 | hypothetical protein ; Integrase | Integrase |
| SEEB0189_RS10025 () | 2006324..2006785 | - | 462 | Protein_1872 | DNA breaking-rejoining protein | - |
| SEEB0189_RS10030 () | 2006774..2006965 | + | 192 | Protein_1873 | glycoside hydrolase family 19 protein | - |
| SEEB0189_RS10035 () | 2007019..2007552 | + | 534 | WP_001050883.1 | DUF2514 domain-containing protein | - |
| SEEB0189_RS10040 () | 2007809..2007976 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| SEEB0189_RS10045 () | 2008041..2008229 | - | 189 | WP_001532317.1 | hypothetical protein | - |
| SEEB0189_RS10050 () | 2008284..2008775 | + | 492 | WP_020839284.1 | DUF1441 family protein | - |
| SEEB0189_RS10055 () | 2008762..2009329 | + | 568 | Protein_1878 | phage terminase large subunit family protein | - |
| SEEB0189_RS10060 () | 2009328..2010559 | + | 1232 | Protein_1879 | tail fiber protein | - |
| SEEB0189_RS10065 () | 2010569..2010856 | + | 288 | Protein_1880 | macro domain-containing protein | - |
| SEEB0189_RS10070 () | 2010869..2011380 | + | 512 | Protein_1881 | tail fiber assembly protein | - |
| SEEB0189_RS10075 () | 2011477..2011677 | - | 201 | WP_031608038.1 | PagK family vesicle-borne virulence factor | - |
| SEEB0189_RS10080 () | 2012067..2012247 | - | 181 | Protein_1883 | IS3 family transposase | - |
| SEEB0189_RS10085 () | 2012247..2012372 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| SEEB0189_RS23215 () | 2012886..2013032 | - | 147 | WP_000951652.1 | hypothetical protein | - |
| SEEB0189_RS10090 () | 2013026..2013193 | + | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| SEEB0189_RS10095 () | 2013520..2014134 | - | 615 | WP_000848072.1 | disulfide bond formation protein B | - |
| SEEB0189_RS10100 () | 2014144..2014302 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| SEEB0189_RS10105 () | 2014435..2015349 | - | 915 | WP_001233445.1 | DMT family transporter | - |
| SEEB0189_RS10110 () | 2016644..2017066 | - | 423 | Protein_1890 | hypothetical protein ; Integrase | Integrase |
| SEEB0189_RS10115 () | 2017136..2018343 | + | 1208 | Protein_1891 | IS256 family transposase ISEc39 | Transposase |
| SEEB0189_RS10120 () | 2018489..2018629 | - | 141 | WP_031608039.1 | hypothetical protein | - |
| SEEB0189_RS10125 () | 2018795..2019064 | - | 270 | WP_077909656.1 | hypothetical protein | - |
| SEEB0189_RS10130 () | 2019434..2019853 | + | 420 | WP_000354401.1 | GNAT family N-acetyltransferase | - |
| SEEB0189_RS10135 () | 2020239..2020715 | - | 477 | WP_020839288.1 | hypothetical protein | - |
| SEEB0189_RS10140 () | 2021045..2021440 | - | 396 | WP_000422890.1 | DUF1398 domain-containing protein | - |
| SEEB0189_RS10145 () | 2022123..2022845 | + | 723 | WP_020839289.1 | hypothetical protein | VF |
| SEEB0189_RS10150 () | 2023130..2023294 | + | 165 | WP_001134857.1 | hypothetical protein | - |
| SEEB0189_RS10155 () | 2023518..2024168 | + | 651 | WP_000986173.1 | protein-serine/threonine phosphatase | - |
| SEEB0189_RS10160 () | 2024187..2024378 | - | 192 | WP_000457838.1 | DUF1482 family protein | - |
| SEEB0189_RS10165 () | 2024489..2024725 | - | 237 | WP_024131167.1 | YebV family protein | - |
| SEEB0189_RS10170 () | 2024843..2026282 | - | 1440 | WP_001525006.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| SEEB0189_RS10175 () | 2026360..2028993 | - | 2634 | WP_001521100.1 | hypothetical protein | VF |
| SEEB0189_RS10180 () | 2028962..2030245 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| SEEB0189_RS10185 () | 2030374..2030871 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| SEEB0189_RS10190 () | 2030969..2031655 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| SEEB0189_RS10195 () | 2031675..2033723 | + | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| SEEB0189_RS10200 () | 2033916..2034797 | + | 882 | WP_000984498.1 | protease HtpX | - |
| SEEB0189_RS10205 () | 2034845..2036218 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| SEEB0189_RS10210 () | 2036394..2037185 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| SEEB0189_RS10215 () | 2037397..2037636 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| SEEB0189_RS10220 () | 2037794..2037937 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| SEEB0189_RS10225 () | 2038008..2038295 | + | 288 | WP_001000660.1 | YebO family protein | - |
| SEEB0189_RS10230 () | 2038944..2039087 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| SEEB0189_RS10235 () | 2039100..2039309 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| SEEB0189_RS10240 () | 2039529..2041274 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| SEEB0189_RS10245 () | 2041340..2042149 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| SEEB0189_RS10250 () | 2042146..2042712 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| SEEB0189_RS10255 () | 2043122..2043580 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|