MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 81940 bp
Accession: NZ_CP039470 Location: 1..81940 Organism: Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN001112 Replicon: plasmid pCFSAN001112
Accession: NZ_CP039470 Location: 1..81940 Organism: Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN001112 Replicon: plasmid pCFSAN001112
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E3389_RS23030 () | 1..5304 | + | 5304 | WP_020833546.1 | conjugative transfer relaxase/helicase TraI | - |
| E3389_RS23035 () | 5323..5889 | + | 567 | WP_000493830.1 | DUF2726 domain-containing protein | - |
| E3389_RS23040 () | 5886..6617 | + | 732 | WP_020833545.1 | type-F conjugative transfer system pilin acetylase TraX | - |
| E3389_RS23045 () | 6857..7327 | + | 471 | Protein_4 | phospholipase D family protein | - |
| E3389_RS23050 () | 7471..7737 | + | 267 | WP_001576653.1 | replication regulatory protein RepA | - |
| E3389_RS23055 () | 7987..8064 | + | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| E3389_RS23060 () | 8045..8926 | + | 882 | WP_023193063.1 | incFII family plasmid replication initiator RepA | - |
| E3389_RS23070 () | 9882..10151 | + | 270 | WP_000084547.1 | hypothetical protein | Antitoxin Detail |
| E3389_RS23075 () | 10148..10429 | + | 282 | WP_000970006.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | Toxin Detail |
| E3389_RS23080 () | 10581..11171 | - | 591 | WP_031607984.1 | plasmid pRiA4b ORF-3 family protein | - |
| E3389_RS23085 () | 12417..12926 | + | 510 | WP_131535394.1 | hypothetical protein | - |
| E3389_RS23090 () | 13235..13756 | + | 522 | WP_136537703.1 | hypothetical protein | - |
| E3389_RS23095 () | 13753..14106 | + | 354 | WP_157782941.1 | helix-turn-helix transcriptional regulator | - |
| E3389_RS23100 () | 14303..15004 | + | 702 | WP_023251326.1 | transcriptional activator SprB | - |
| E3389_RS23105 () | 15185..15577 | - | 393 | Protein_15 | transposase family protein | - |
| E3389_RS23110 () | 15593..17053 | - | 1461 | WP_000834698.1 | hypothetical protein | - |
| E3389_RS23115 () | 17535..18020 | - | 486 | Protein_17 | transposase | - |
| E3389_RS23565 () | 18110..18568 | - | 459 | WP_086790286.1 | LysR family transcriptional regulator | - |
| E3389_RS23570 () | 18933..19238 | - | 306 | WP_023193066.1 | hypothetical protein | - |
| E3389_RS23125 () | 19226..19396 | - | 171 | Protein_20 | transposase | - |
| E3389_RS23130 () | 19543..19788 | - | 246 | WP_131535392.1 | hypothetical protein | - |
| E3389_RS23140 () | 21007..21154 | + | 148 | Protein_22 | transposase | - |
| E3389_RS23145 () | 21311..23737 | - | 2427 | WP_000471149.1 | fimbrial biogenesis outer membrane usher protein | - |
| E3389_RS23150 () | 23757..24464 | - | 708 | WP_020833592.1 | molecular chaperone | - |
| E3389_RS23155 () | 24840..26039 | + | 1200 | WP_020833591.1 | IS256 family transposase | - |
| E3389_RS23160 () | 26119..26670 | - | 552 | WP_020833590.1 | hypothetical protein | - |
| E3389_RS23165 () | 27364..30111 | + | 2748 | WP_023193067.1 | inverse autotransporter beta domain-containing protein | - |
| E3389_RS23170 () | 30123..31175 | + | 1053 | WP_020833588.1 | Ig-like domain-containing protein | - |
| E3389_RS23175 () | 31374..32096 | + | 723 | WP_000742239.1 | LuxR C-terminal-related transcriptional regulator | - |
| E3389_RS23180 () | 32884..33255 | + | 372 | WP_100215268.1 | DUF1311 domain-containing protein | - |
| E3389_RS23185 () | 34075..34293 | + | 219 | WP_000813642.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| E3389_RS23190 () | 34295..34600 | + | 306 | WP_020833585.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| E3389_RS23195 () | 34909..35691 | + | 783 | WP_020833584.1 | site-specific integrase | - |
| E3389_RS23200 () | 35842..36783 | - | 942 | WP_000728920.1 | Rpn family recombination-promoting nuclease/putative transposase | - |
| E3389_RS23205 () | 37414..37668 | + | 255 | WP_001749329.1 | hypothetical protein | - |
| E3389_RS23210 () | 38357..39562 | + | 1206 | WP_000427674.1 | AAA family ATPase | - |
| E3389_RS23215 () | 39562..40536 | + | 975 | WP_020833582.1 | ParB/RepB/Spo0J family partition protein | - |
| E3389_RS23220 () | 40618..41385 | - | 768 | Protein_38 | translesion error-prone DNA polymerase V subunit UmuC | - |
| E3389_RS23230 () | 42019..42442 | - | 424 | Protein_39 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| E3389_RS23235 () | 42622..43293 | - | 672 | WP_020833580.1 | SOS response-associated peptidase family protein | - |
| E3389_RS23240 () | 43653..44330 | + | 678 | WP_020833579.1 | DNA methylase | - |
| E3389_RS23245 () | 44330..44551 | + | 222 | WP_020833578.1 | hypothetical protein | - |
| E3389_RS23250 () | 44562..44981 | + | 420 | WP_020833577.1 | DUF1380 domain-containing protein | - |
| E3389_RS23255 () | 45036..45815 | + | 780 | WP_020833576.1 | hypothetical protein | - |
| E3389_RS23260 () | 46221..46727 | + | 507 | WP_020833575.1 | antirestriction protein ArdA | - |
| E3389_RS23265 () | 46770..46961 | + | 192 | WP_020833574.1 | hypothetical protein | - |
| E3389_RS23270 () | 47154..47407 | + | 254 | Protein_47 | DNA polymerase III subunit theta | - |
| E3389_RS23275 () | 47442..47758 | + | 317 | Protein_48 | hypothetical protein | - |
| E3389_RS23575 () | 47899..48120 | - | 222 | WP_114053208.1 | hypothetical protein | - |
| E3389_RS23285 () | 48451..49005 | + | 555 | WP_020833571.1 | single-stranded DNA-binding protein | - |
| E3389_RS23290 () | 49058..49300 | + | 243 | WP_024143550.1 | DUF905 domain-containing protein | - |
| E3389_RS23295 () | 49371..51404 | + | 2034 | WP_020833569.1 | ParB/RepB/Spo0J family partition protein | - |
| E3389_RS23300 () | 51445..51879 | + | 435 | WP_015059789.1 | conjugation system SOS inhibitor PsiB | - |
| E3389_RS23305 () | 51876..52604 | + | 729 | WP_020833568.1 | plasmid SOS inhibition protein A | - |
| E3389_RS23310 () | 52601..52954 | + | 354 | WP_020833567.1 | hypothetical protein | - |
| E3389_RS23315 () | 53309..53683 | + | 375 | WP_020833566.1 | hypothetical protein | - |
| E3389_RS23320 () | 54409..54813 | + | 405 | WP_020833565.1 | hypothetical protein | - |
| E3389_RS23325 () | 54870..55217 | + | 348 | WP_000550116.1 | hypothetical protein | - |
| E3389_RS23330 () | 55312..55458 | + | 147 | WP_001159046.1 | hypothetical protein | - |
| E3389_RS23335 () | 55505..56329 | + | 825 | WP_020833564.1 | N-6 DNA methylase | - |
| E3389_RS23340 () | 56976..57506 | + | 531 | WP_000556935.1 | antirestriction protein | - |
| E3389_RS23345 () | 57517..57972 | - | 456 | WP_020833563.1 | transglycosylase SLT domain-containing protein | - |
| E3389_RS23350 () | 58441..58821 | + | 381 | WP_020833562.1 | relaxosome protein TraM | - |
| E3389_RS23355 () | 59118..59567 | + | 450 | WP_020833561.1 | helix-turn-helix domain-containing protein | - |
| E3389_RS23360 () | 59773..60006 | + | 234 | WP_000662610.1 | TraY domain-containing protein | - |
| E3389_RS23365 () | 60123..60482 | + | 360 | WP_001054221.1 | type IV conjugative transfer system pilin TraA | - |
| E3389_RS23370 () | 60484..60789 | + | 306 | WP_000398849.1 | type IV conjugative transfer system protein TraL | - |
| E3389_RS23375 () | 60809..61372 | + | 564 | WP_001535119.1 | type IV conjugative transfer system protein TraE | - |
| E3389_RS23380 () | 61362..62102 | + | 741 | WP_020833560.1 | type-F conjugative transfer system secretin TraK | - |
| E3389_RS23385 () | 62089..63450 | + | 1362 | WP_000024509.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| E3389_RS23390 () | 63561..63785 | + | 225 | WP_008455352.1 | TraR/DksA C4-type zinc finger protein | - |
| E3389_RS23395 () | 63789..64241 | + | 453 | WP_020833558.1 | hypothetical protein | - |
| E3389_RS23400 () | 64259..64873 | + | 615 | WP_020833557.1 | type IV conjugative transfer system lipoprotein TraV | - |
| E3389_RS23405 () | 64884..67475 | + | 2592 | WP_001808381.1 | type IV secretion system protein TraC | - |
| E3389_RS23410 () | 67472..67936 | + | 465 | WP_024143549.1 | type-F conjugative transfer system protein TrbI | - |
| E3389_RS23415 () | 67936..68571 | + | 636 | WP_000715590.1 | type-F conjugative transfer system protein TraW | - |
| E3389_RS23420 () | 68568..69563 | + | 996 | WP_004558357.1 | conjugal transfer pilus assembly protein TraU | - |
| E3389_RS23425 () | 69574..69942 | + | 369 | WP_020833555.1 | hypothetical protein | - |
| E3389_RS23430 () | 69939..70553 | + | 615 | WP_020833554.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| E3389_RS23435 () | 70550..72403 | + | 1854 | WP_020833553.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| E3389_RS23440 () | 72400..73179 | + | 780 | WP_004558353.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| E3389_RS23445 () | 73201..73812 | + | 612 | WP_020833552.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| E3389_RS23450 () | 73812..75173 | + | 1362 | WP_020833551.1 | F-type conjugal transfer protein TraH | - |
| E3389_RS23455 () | 75175..78071 | + | 2897 | Protein_84 | conjugal transfer mating pair stabilization protein TraG | - |
| E3389_RS23460 () | 78083..78643 | + | 561 | WP_020833549.1 | hypothetical protein | - |
| E3389_RS23465 () | 78819..79556 | + | 738 | WP_020833548.1 | complement resistance protein TraT | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|