MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 79944 bp
Accession: NZ_CP038888 Location: 1..79944 Organism: Piscirickettsia salmonis strain Psal-004 Replicon: plasmid unnamed2
Accession: NZ_CP038888 Location: 1..79944 Organism: Piscirickettsia salmonis strain Psal-004 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| Psal004_RS16995 () | 1..1023 | + | 1023 | WP_016211377.1 | AAA family ATPase | - |
| Psal004_RS17000 () | 1047..1916 | + | 870 | WP_016211383.1 | hypothetical protein | - |
| Psal004_RS17005 () | 2222..2485 | + | 264 | WP_032126138.1 | RNA-binding protein | - |
| Psal004_RS17010 () | 2733..3161 | - | 429 | WP_016211378.1 | hypothetical protein | - |
| Psal004_RS17015 () | 3161..3598 | - | 438 | WP_016211376.1 | hypothetical protein | - |
| Psal004_RS17020 () | 3598..4251 | - | 654 | WP_016211382.1 | DUF4376 domain-containing protein | - |
| Psal004_RS17025 () | 4263..4754 | - | 492 | WP_016211381.1 | hypothetical protein | - |
| Psal004_RS17030 () | 4825..5400 | - | 576 | WP_075273327.1 | IS630 family transposase ISAcma25 | Transposase |
| Psal004_RS17035 () | 5346..5711 | - | 366 | WP_032126362.1 | IS630 family transposase ISTer1 | Transposase |
| Psal004_RS17040 () | 5762..6361 | - | 600 | WP_016212400.1 | hypothetical protein | - |
| Psal004_RS17045 () | 6361..6621 | - | 261 | WP_016212399.1 | hypothetical protein | - |
| Psal004_RS17050 () | 6751..7904 | + | 1154 | WP_105962623.1 | IS3 family transposase ISMasp3 | Transposase |
| Psal004_RS17055 () | 7932..8939 | - | 1008 | WP_016212392.1 | hypothetical protein | - |
| Psal004_RS17060 () | 9003..9731 | + | 729 | WP_075273802.1 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS17065 () | 9915..10262 | + | 348 | WP_016212131.1 | hypothetical protein | - |
| Psal004_RS17070 () | 10701..11885 | + | 1185 | WP_016212135.1 | 3-methylitaconate isomerase | - |
| Psal004_RS17075 () | 11932..12036 | + | 105 | Protein_16 | IS6 family transposase | - |
| Psal004_RS17080 () | 12129..12830 | + | 702 | WP_075275202.1 | IS30 family transposase ISPlu1 | Transposase |
| Psal004_RS17085 () | 12833..13561 | - | 729 | WP_075275201.1 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS17090 () | 13690..14718 | + | 1029 | WP_016212164.1 | hypothetical protein | - |
| Psal004_RS17095 () | 15742..16428 | + | 687 | WP_016211443.1 | Fic family protein | - |
| Psal004_RS17100 () | 16432..16986 | + | 555 | WP_016211439.1 | Tn3 family transposase ISPsy42 | Transposase |
| Psal004_RS17105 () | 17031..17969 | + | 939 | WP_016211436.1 | Fic family protein | - |
| Psal004_RS17110 () | 17942..18133 | - | 192 | WP_016211434.1 | hypothetical protein | - |
| Psal004_RS17115 () | 18311..18661 | - | 351 | WP_016211445.1 | hypothetical protein | - |
| Psal004_RS17120 () | 18678..19304 | - | 627 | WP_016211437.1 | zinc-ribbon domain-containing protein | - |
| Psal004_RS17125 () | 19311..19736 | - | 426 | WP_155049210.1 | hypothetical protein | - |
| Psal004_RS17130 () | 19714..20628 | - | 915 | WP_016211440.1 | hypothetical protein | - |
| Psal004_RS17135 () | 20898..21404 | + | 507 | WP_016211444.1 | antirestriction protein ArdA | - |
| Psal004_RS17140 () | 21553..21936 | + | 384 | WP_051307358.1 | hypothetical protein | - |
| Psal004_RS17145 () | 22220..22450 | - | 231 | WP_129556729.1 | hypothetical protein | - |
| Psal004_RS17150 () | 22437..22661 | + | 225 | WP_016212541.1 | hypothetical protein | - |
| Psal004_RS17155 () | 22721..22870 | + | 150 | WP_016212539.1 | hypothetical protein | - |
| Psal004_RS17160 () | 22867..23841 | - | 975 | WP_036771330.1 | IS30 family transposase ISPlu1 | Transposase |
| Psal004_RS17165 () | 23885..24064 | + | 180 | WP_016212090.1 | hypothetical protein | - |
| Psal004_RS17170 () | 24064..24492 | + | 429 | WP_016212087.1 | hypothetical protein | - |
| Psal004_RS17175 () | 24660..25199 | - | 540 | WP_032126714.1 | hypothetical protein | - |
| Psal004_RS17180 () | 25436..25666 | - | 231 | WP_016212089.1 | hypothetical protein | - |
| Psal004_RS17185 () | 25765..26802 | - | 1038 | WP_032126713.1 | hypothetical protein | - |
| Psal004_RS17190 () | 27272..28243 | - | 972 | WP_033923677.1 | IS91 family transposase ISVsa9 | Transposase |
| Psal004_RS18265 () | 28168..28407 | - | 240 | WP_075275277.1 | IS91 family transposase ISVsa9 | Transposase |
| Psal004_RS18270 () | 28579..28863 | + | 285 | Protein_41 | IS30 family transposase IS4351 | Transposase |
| Psal004_RS17200 () | 28931..29584 | + | 654 | WP_016210964.1 | MFS transporter | - |
| Psal004_RS17205 () | 29605..30330 | - | 726 | WP_016210975.1 | ester cyclase | - |
| Psal004_RS17210 () | 30407..31162 | - | 756 | WP_016210971.1 | methyltransferase domain-containing protein | - |
| Psal004_RS17215 () | 31325..31534 | + | 210 | WP_016210967.1 | hypothetical protein | - |
| Psal004_RS17220 () | 31543..31848 | + | 306 | WP_016210958.1 | hypothetical protein | - |
| Psal004_RS17225 () | 32002..32301 | + | 300 | WP_016210976.1 | hypothetical protein | - |
| Psal004_RS17230 () | 32348..33163 | + | 816 | WP_016210962.1 | hypothetical protein | - |
| Psal004_RS17235 () | 33186..33746 | + | 561 | WP_016210973.1 | hypothetical protein | - |
| Psal004_RS17240 () | 33715..34077 | + | 363 | WP_016210959.1 | hypothetical protein | - |
| Psal004_RS17245 () | 34070..34417 | + | 348 | WP_016210966.1 | hypothetical protein | - |
| Psal004_RS17250 () | 34414..34653 | + | 240 | WP_016210963.1 | hypothetical protein | - |
| Psal004_RS17255 () | 34749..35036 | + | 288 | WP_036794065.1 | hypothetical protein | - |
| Psal004_RS17260 () | 35033..35317 | + | 285 | WP_036794070.1 | hypothetical protein | - |
| Psal004_RS17265 () | 35319..35792 | + | 474 | WP_016210960.1 | single-stranded DNA-binding protein | - |
| Psal004_RS17270 () | 35907..36299 | + | 393 | WP_129556726.1 | hypothetical protein | - |
| Psal004_RS17275 () | 36448..36675 | + | 228 | WP_016210972.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| Psal004_RS17280 () | 36684..37091 | + | 408 | WP_016210974.1 | DUF4411 family protein | Toxin Detail |
| Psal004_RS17285 () | 37208..37888 | + | 681 | WP_129556725.1 | DNA/RNA non-specific endonuclease | - |
| Psal004_RS17290 () | 38067..38360 | + | 294 | WP_016210977.1 | zinc ribbon domain-containing protein | - |
| Psal004_RS18275 () | 38360..38638 | + | 279 | WP_032126476.1 | hypothetical protein | - |
| Psal004_RS17300 () | 38905..39084 | - | 180 | WP_155046773.1 | phosphatase | - |
| Psal004_RS17305 () | 39131..39496 | + | 366 | WP_016212235.1 | hypothetical protein | - |
| Psal004_RS17310 () | 39797..40180 | + | 384 | WP_032126134.1 | HNH endonuclease | - |
| Psal004_RS17315 () | 40268..40747 | + | 480 | WP_016212234.1 | P27 family phage terminase small subunit | - |
| Psal004_RS17320 () | 40751..40960 | + | 210 | WP_016212231.1 | hypothetical protein | - |
| Psal004_RS17325 () | 40997..41332 | + | 336 | WP_059372752.1 | hypothetical protein | - |
| Psal004_RS17330 () | 41351..42433 | + | 1083 | WP_081377926.1 | terminase large subunit | - |
| Psal004_RS17335 () | 42430..43671 | + | 1242 | WP_016211136.1 | phage portal protein | - |
| Psal004_RS17340 () | 43634..44290 | + | 657 | WP_016211130.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| Psal004_RS17345 () | 44348..45541 | + | 1194 | WP_016211140.1 | phage major capsid protein | - |
| Psal004_RS17350 () | 45662..46996 | + | 1335 | WP_016211133.1 | hypothetical protein | - |
| Psal004_RS18280 () | 47035..47190 | + | 156 | WP_016211131.1 | hypothetical protein | - |
| Psal004_RS17355 () | 47187..47498 | + | 312 | WP_016211137.1 | head-tail connector protein | - |
| Psal004_RS17360 () | 47495..47818 | + | 324 | WP_016211132.1 | phage head closure protein | - |
| Psal004_RS17365 () | 47811..48206 | + | 396 | WP_016211139.1 | HK97 gp10 family phage protein | - |
| Psal004_RS17370 () | 48203..48553 | + | 351 | WP_016211129.1 | DUF3168 domain-containing protein | - |
| Psal004_RS17375 () | 48553..48975 | + | 423 | WP_016211141.1 | hypothetical protein | - |
| Psal004_RS17380 () | 48977..49300 | + | 324 | WP_032126913.1 | hypothetical protein | - |
| Psal004_RS17385 () | 49357..49623 | + | 267 | WP_016211142.1 | DUF4035 domain-containing protein | - |
| Psal004_RS17390 () | 49627..51705 | + | 2079 | WP_032126912.1 | hypothetical protein | - |
| Psal004_RS17395 () | 51698..52039 | + | 342 | WP_016210657.1 | phage tail protein | - |
| Psal004_RS17400 () | 52036..52707 | + | 672 | WP_016210666.1 | phage minor tail protein L | - |
| Psal004_RS17405 () | 52676..53422 | + | 747 | WP_032126911.1 | C40 family peptidase | - |
| Psal004_RS17410 () | 53412..53969 | + | 558 | WP_016210665.1 | tail assembly protein | - |
| Psal004_RS17415 () | 53976..54263 | - | 288 | WP_016210662.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| Psal004_RS17420 () | 54253..54507 | - | 255 | WP_016210670.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin Detail |
| Psal004_RS17425 () | 54601..57888 | + | 3288 | WP_016210653.1 | host specificity protein J | - |
| Psal004_RS17430 () | 57888..59027 | + | 1140 | WP_032126910.1 | hypothetical protein | - |
| Psal004_RS17435 () | 59039..59692 | + | 654 | WP_027242941.1 | DUF4376 domain-containing protein | - |
| Psal004_RS17440 () | 59692..60129 | + | 438 | WP_032126909.1 | hypothetical protein | - |
| Psal004_RS17445 () | 60129..60557 | + | 429 | WP_059372253.1 | hypothetical protein | - |
| Psal004_RS17450 () | 60951..62054 | - | 1104 | WP_016211978.1 | hypothetical protein | - |
| Psal004_RS17455 () | 62340..62570 | - | 231 | WP_016211980.1 | hypothetical protein | - |
| Psal004_RS17460 () | 62754..63728 | + | 975 | WP_075275209.1 | IS30 family transposase ISPlu1 | Transposase |
| Psal004_RS17465 () | 63775..64845 | - | 1071 | WP_016211676.1 | hypothetical protein | - |
| Psal004_RS17470 () | 65308..66045 | + | 738 | WP_016211671.1 | ParA family protein | - |
| Psal004_RS17475 () | 66038..66403 | + | 366 | WP_016211673.1 | hypothetical protein | - |
| Psal004_RS17480 () | 67075..67356 | + | 282 | WP_016211674.1 | hypothetical protein | - |
| Psal004_RS17485 () | 67340..67624 | + | 285 | WP_032126620.1 | hypothetical protein | - |
| Psal004_RS17490 () | 67631..67786 | + | 156 | WP_016211672.1 | hypothetical protein | - |
| Psal004_RS17495 () | 67958..68608 | + | 651 | WP_016211670.1 | helix-turn-helix domain-containing protein | - |
| Psal004_RS17500 () | 68619..69701 | - | 1083 | WP_054300162.1 | IS481 family transposase ISFw3 | Transposase |
| Psal004_RS17505 () | 69887..70288 | - | 402 | WP_016212427.1 | GTP cyclohydrolase I family protein | - |
| Psal004_RS17510 () | 70290..70568 | - | 279 | WP_129556722.1 | VUT family protein | - |
| Psal004_RS17515 () | 70601..71437 | - | 837 | WP_081377862.1 | IS3 family transposase IS1351 | Transposase |
| Psal004_RS17520 () | 71449..71721 | - | 273 | WP_032126239.1 | IS3 family transposase ISWsu1 | Transposase |
| Psal004_RS17525 () | 71788..72129 | - | 342 | WP_080664877.1 | IS3 family transposase | - |
| Psal004_RS18285 () | 72253..73107 | + | 855 | WP_129556721.1 | IS91 family transposase ISVsa9 | Transposase |
| Psal004_RS18290 () | 73123..73512 | + | 390 | WP_016212127.1 | IS91 family transposase ISVsa21 | Transposase |
| Psal004_RS17535 () | 73542..74270 | + | 729 | WP_054300202.1 | IS6 family transposase ISPsa2 | Transposase |
| Psal004_RS17540 () | 74560..75792 | - | 1233 | WP_032126623.1 | MFS transporter | - |
| Psal004_RS17545 () | 75903..76454 | - | 552 | Protein_113 | IS30 family transposase IS4351 | Transposase |
| Psal004_RS17550 () | 76474..77535 | - | 1062 | WP_054300173.1 | IS701 family transposase ISAeme11 | Transposase |
| Psal004_RS17555 () | 77583..78032 | - | 450 | WP_075275207.1 | IS30 family transposase ISPlu1 | Transposase |
| Psal004_RS17560 () | 78159..79184 | - | 1026 | WP_032126388.1 | helix-turn-helix domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|