MGE detailed information
MGE type: Conjugative plasmid MGE length: 87604 bp
Accession: NZ_CP038793 Location: 1..87604 Organism: Escherichia coli strain PF9285 Replicon: plasmid pDW54_2
Accession: NZ_CP038793 Location: 1..87604 Organism: Escherichia coli strain PF9285 Replicon: plasmid pDW54_2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E5M00_RS26810 () | 1..873 | + | 873 | WP_001536607.1 | incFII family plasmid replication initiator RepA | - |
| E5M00_RS27645 () | 1568..1726 | + | 159 | WP_032072263.1 | hypothetical protein | - |
| E5M00_RS26825 () | 1781..2050 | + | 270 | WP_000079928.1 | hypothetical protein | Antitoxin Detail |
| E5M00_RS26830 () | 2047..2328 | + | 282 | WP_000969996.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| E5M00_RS26835 () | 2374..3222 | + | 849 | WP_021511698.1 | 3'-5' exonuclease | - |
| E5M00_RS26850 () | 3985..4611 | + | 627 | WP_021511696.1 | hypothetical protein | - |
| E5M00_RS26855 () | 4608..6134 | + | 1527 | WP_135798831.1 | ATP-dependent helicase | - |
| E5M00_RS26860 () | 6245..6796 | - | 552 | WP_001760564.1 | plasmid stability family protein | - |
| E5M00_RS26865 () | 6808..7779 | - | 972 | WP_001760566.1 | plasmid segregation protein parM | - |
| E5M00_RS26875 () | 8410..9312 | + | 903 | WP_077631593.1 | DUF1281 domain-containing protein | - |
| E5M00_RS26880 () | 9309..9621 | + | 313 | Protein_10 | hypothetical protein | - |
| E5M00_RS26885 () | 9697..10380 | + | 684 | WP_021511694.1 | DNA methylase | - |
| E5M00_RS26890 () | 10381..10602 | + | 222 | WP_021511693.1 | hypothetical protein | - |
| E5M00_RS26895 () | 10616..11050 | + | 435 | WP_000274496.1 | DUF1380 family protein | - |
| E5M00_RS26900 () | 11095..11865 | + | 771 | WP_021540579.1 | hypothetical protein | - |
| E5M00_RS26915 () | 12402..12704 | + | 303 | WP_072106536.1 | antirestriction protein | - |
| E5M00_RS26920 () | 12751..13173 | + | 423 | WP_001546488.1 | DUF1380 family protein | - |
| E5M00_RS26925 () | 13170..13361 | + | 192 | WP_001027516.1 | hypothetical protein | - |
| E5M00_RS26935 () | 13499..13780 | + | 282 | WP_154671919.1 | hypothetical protein | - |
| E5M00_RS26945 () | 14133..14660 | + | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| E5M00_RS26950 () | 14718..14951 | + | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| E5M00_RS26955 () | 15010..16968 | + | 1959 | WP_135798827.1 | ParB/RepB/Spo0J family partition protein | - |
| E5M00_RS26960 () | 17023..17457 | + | 435 | WP_000845897.1 | conjugation system SOS inhibitor PsiB | - |
| E5M00_RS26965 () | 17454..18173 | + | 720 | WP_058100855.1 | plasmid SOS inhibition protein A | - |
| E5M00_RS26970 () | 18170..18766 | + | 597 | WP_000977995.1 | hypothetical protein | - |
| E5M00_RS26980 () | 19228..19728 | + | 501 | WP_000117624.1 | antirestriction protein ArdA | - |
| E5M00_RS26995 () | 20460..20894 | + | 435 | WP_000218862.1 | hypothetical protein | - |
| E5M00_RS27000 () | 20987..21253 | + | 267 | WP_001247860.1 | hypothetical protein | - |
| E5M00_RS27005 () | 21430..21819 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| E5M00_RS27010 () | 21816..22730 | + | 915 | WP_021540571.1 | Recombination-promoting nuclease RpnA | VF |
| E5M00_RS27015 () | 22730..22999 | + | 270 | WP_032072251.1 | hypothetical protein | VF |
| E5M00_RS27020 () | 23030..23281 | - | 252 | WP_000148286.1 | helix-turn-helix domain-containing protein | - |
| E5M00_RS27035 () | 23861..24709 | + | 849 | WP_032072253.1 | DUF4942 domain-containing protein | - |
| E5M00_RS27040 () | 24794..25129 | - | 336 | WP_000157096.1 | hypothetical protein | - |
| E5M00_RS27045 () | 25362..25694 | + | 333 | WP_001291058.1 | hypothetical protein | - |
| E5M00_RS27050 () | 25706..28417 | + | 2712 | WP_000991386.1 | Protein TraI | Relaxase |
| E5M00_RS27055 () | 28485..28916 | + | 432 | WP_001335086.1 | hypothetical protein | - |
| E5M00_RS27060 () | 29014..29244 | - | 231 | WP_032072127.1 | hypothetical protein | - |
| E5M00_RS27070 () | 29723..32026 | - | 2304 | WP_000077655.1 | TraM recognition domain-containing protein | - |
| E5M00_RS27075 () | 32007..33131 | - | 1125 | WP_135798828.1 | DsbC family protein | - |
| E5M00_RS27650 () | 33128..34444 | - | 1317 | WP_044192348.1 | IncI1-type conjugal transfer protein TrbA | - |
| E5M00_RS27655 () | 34782..34928 | + | 147 | WP_001346191.1 | hypothetical protein | - |
| E5M00_RS27090 () | 35509..35760 | + | 252 | WP_001081067.1 | hypothetical protein | - |
| E5M00_RS27660 () | 35823..35999 | - | 177 | WP_001054907.1 | hypothetical protein | - |
| E5M00_RS27095 () | 36150..36617 | - | 468 | WP_000598962.1 | thermonuclease family protein | - |
| E5M00_RS27100 () | 36777..37400 | + | 624 | WP_001155250.1 | DNA-binding protein | - |
| E5M00_RS27110 () | 37598..37813 | - | 216 | WP_000266543.1 | hypothetical protein | - |
| E5M00_RS27115 () | 37817..38185 | - | 369 | WP_001363143.1 | hypothetical protein | - |
| E5M00_RS27120 () | 38197..38388 | - | 192 | WP_000751583.1 | hypothetical protein | - |
| E5M00_RS27125 () | 38485..38727 | - | 243 | WP_001363144.1 | hypothetical protein | - |
| E5M00_RS27130 () | 39057..39209 | + | 153 | WP_001302699.1 | Hok/Gef family protein | - |
| E5M00_RS27135 () | 39347..40933 | - | 1587 | WP_000004560.1 | TnsA endonuclease N-terminal domain-containing protein | - |
| E5M00_RS27140 () | 41207..41857 | - | 651 | WP_021526891.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| E5M00_RS27145 () | 41928..44093 | - | 2166 | WP_135798829.1 | DotA/TraY family protein | - |
| E5M00_RS27150 () | 44166..44735 | - | 570 | WP_000650755.1 | conjugal transfer protein TraX | - |
| E5M00_RS27155 () | 44732..45937 | - | 1206 | WP_021526893.1 | conjugal transfer protein TraW | - |
| E5M00_RS27160 () | 45898..46515 | - | 618 | WP_000286857.1 | hypothetical protein | - |
| E5M00_RS27165 () | 46515..49559 | - | 3045 | WP_021552467.1 | hypothetical protein | - |
| E5M00_RS27170 () | 49784..50329 | + | 546 | WP_001369268.1 | hypothetical protein | - |
| E5M00_RS27175 () | 50302..50682 | - | 381 | WP_000690882.1 | hypothetical protein | - |
| E5M00_RS27665 () | 50682..51041 | - | 360 | WP_000379509.1 | hypothetical protein | - |
| E5M00_RS27180 () | 51100..51918 | - | 819 | WP_072148514.1 | conjugal transfer protein TraT | - |
| E5M00_RS27185 () | 51833..52084 | - | 252 | WP_001277575.1 | hypothetical protein | - |
| E5M00_RS27190 () | 52141..52539 | - | 399 | WP_000086067.1 | hypothetical protein | - |
| E5M00_RS27195 () | 52586..53113 | - | 528 | WP_001379391.1 | conjugal transfer protein TraQ | - |
| E5M00_RS27200 () | 53113..53826 | - | 714 | WP_033804620.1 | conjugal transfer protein TraP | - |
| E5M00_RS27205 () | 53823..55154 | - | 1332 | WP_009453278.1 | conjugal transfer protein TraO | - |
| E5M00_RS27210 () | 55158..56132 | - | 975 | WP_021526895.1 | hypothetical protein | VF |
| E5M00_RS27215 () | 56143..56838 | - | 696 | WP_001287261.1 | DotI/IcmL family type IV secretion protein | - |
| E5M00_RS27220 () | 56850..57200 | - | 351 | WP_001056365.1 | hypothetical protein | - |
| E5M00_RS27225 () | 57217..61233 | - | 4017 | WP_021554958.1 | hypothetical protein | - |
| E5M00_RS27230 () | 61297..61587 | - | 291 | WP_000817799.1 | hypothetical protein | - |
| E5M00_RS27235 () | 61584..62732 | - | 1149 | WP_000625246.1 | putative protein YggR | VF |
| E5M00_RS27240 () | 62716..63552 | - | 837 | WP_000848138.1 | hypothetical protein | VF |
| E5M00_RS27245 () | 63549..64001 | - | 453 | WP_001081198.1 | DotD/TraH family lipoprotein | - |
| E5M00_RS27670 () | 64050..64220 | - | 171 | WP_000482367.1 | hypothetical protein | - |
| E5M00_RS27250 () | 64360..65562 | - | 1203 | WP_001563246.1 | conjugal transfer protein TraF | - |
| E5M00_RS27255 () | 65652..66473 | - | 822 | WP_001597009.1 | hypothetical protein | - |
| E5M00_RS27260 () | 66733..67053 | + | 321 | WP_000695052.1 | hypothetical protein | - |
| E5M00_RS27265 () | 67145..67435 | - | 291 | WP_001597008.1 | hypothetical protein | - |
| E5M00_RS27270 () | 67477..68646 | - | 1170 | WP_000486830.1 | site-specific integrase | - |
| E5M00_RS27285 () | 69261..70625 | - | 1365 | WP_069914744.1 | hypothetical protein | VF |
| E5M00_RS27290 () | 70630..71265 | - | 636 | WP_000478594.1 | prepilin peptidase | - |
| E5M00_RS27295 () | 71284..71757 | - | 474 | WP_000870986.1 | hypothetical protein | VF |
| E5M00_RS27300 () | 71811..72347 | - | 537 | WP_001011158.1 | cleavage protein | - |
| E5M00_RS27305 () | 72421..73521 | - | 1101 | WP_000670138.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| E5M00_RS27310 () | 73523..75031 | - | 1509 | WP_000886636.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| E5M00_RS27315 () | 75116..75568 | - | 453 | WP_001112925.1 | type IV pilus biogenesis protein PilP | - |
| E5M00_RS27320 () | 75558..76853 | - | 1296 | WP_000129888.1 | type 4b pilus protein PilO2 | - |
| E5M00_RS27325 () | 76874..78493 | - | 1620 | WP_001034998.1 | Outer membrane lipoprotein BfpB | VF |
| E5M00_RS27330 () | 78524..78961 | - | 438 | WP_000539685.1 | type IV pilus biogenesis protein PilM | - |
| E5M00_RS27335 () | 78966..80033 | - | 1068 | WP_001170195.1 | hypothetical protein | VF |
| E5M00_RS27340 () | 80136..80576 | + | 441 | WP_000468139.1 | hypothetical protein | - |
| E5M00_RS27345 () | 80569..81456 | - | 888 | WP_040116964.1 | hypothetical protein | - |
| E5M00_RS27350 () | 81793..82038 | + | 246 | WP_040116962.1 | hypothetical protein | - |
| E5M00_RS27355 () | 82072..82407 | - | 336 | WP_135798830.1 | hypothetical protein | - |
| E5M00_RS27360 () | 82524..82841 | - | 318 | WP_001330559.1 | PilI type IV pilus biogenesis protein | - |
| E5M00_RS27365 () | 82847..84541 | - | 1695 | WP_000482671.1 | flotillin family protein | - |
| E5M00_RS27370 () | 84568..85188 | - | 621 | WP_000176497.1 | DUF1449 family protein | - |
| E5M00_RS27380 () | 85455..86120 | - | 666 | WP_000154143.1 | hypothetical protein | - |
| E5M00_RS27385 () | 86261..86902 | - | 642 | WP_000335846.1 | transcription termination factor NusG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|