MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 190317 bp
Accession: NZ_CP038281 Location: 5145963..5336279 Organism: Raoultella ornithinolytica strain WLK218 Replicon: chromosome
Accession: NZ_CP038281 Location: 5145963..5336279 Organism: Raoultella ornithinolytica strain WLK218 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E4K08_RS28240 () | 5141222..5142538 | + | 1317 | WP_015584402.1 | LLM class flavin-dependent oxidoreductase | - |
| E4K08_RS28245 () | 5142557..5143489 | + | 933 | WP_004861627.1 | ABC transporter substrate-binding protein | - |
| E4K08_RS28250 () | 5143501..5144010 | + | 510 | WP_004861630.1 | GNAT family N-acetyltransferase | - |
| E4K08_RS28255 () | 5144020..5144949 | + | 930 | WP_004861632.1 | amino acid ABC transporter permease | - |
| E4K08_RS28260 () | 5144933..5145709 | + | 777 | WP_004861634.1 | amino acid ABC transporter ATP-binding protein | - |
| E4K08_RS28265 () | 5145706..5146599 | + | 894 | WP_064357085.1 | transporter substrate-binding domain-containing protein | - |
| E4K08_RS30765 () | 5146677..5146826 | + | 150 | WP_162897415.1 | hypothetical protein | - |
| E4K08_RS28270 () | 5147000..5147656 | + | 657 | WP_075808654.1 | hypothetical protein | - |
| E4K08_RS28275 () | 5147872..5148489 | + | 618 | WP_004861641.1 | glutathione S-transferase | - |
| E4K08_RS28280 () | 5148557..5148784 | + | 228 | WP_137056571.1 | tautomerase PptA | - |
| E4K08_RS28285 () | 5148993..5150597 | - | 1605 | WP_104896206.1 | carbohydrate porin | - |
| E4K08_RS28290 () | 5150642..5152024 | - | 1383 | WP_137056572.1 | glycoside-pentoside-hexuronide (GPH):cation symporter | - |
| E4K08_RS28295 () | 5152050..5153621 | - | 1572 | WP_044351475.1 | family 78 glycoside hydrolase catalytic domain | - |
| E4K08_RS28300 () | 5153827..5154648 | + | 822 | WP_004861650.1 | helix-turn-helix domain-containing protein | - |
| E4K08_RS28305 () | 5154657..5155175 | - | 519 | WP_103073176.1 | ClbS/DfsB family four-helix bundle protein | - |
| E4K08_RS28310 () | 5155298..5156074 | - | 777 | WP_004861654.1 | DNA alkylation repair protein | - |
| E4K08_RS28315 () | 5156064..5156573 | - | 510 | WP_004861657.1 | MarR family transcriptional regulator | - |
| E4K08_RS28320 () | 5156905..5157486 | - | 582 | WP_004861659.1 | flavin reductase family protein | - |
| E4K08_RS28325 () | 5157698..5158402 | + | 705 | WP_162098180.1 | ABC transporter ATP-binding protein | - |
| E4K08_RS28330 () | 5158399..5159367 | + | 969 | WP_004861664.1 | ABC transporter substrate-binding protein | - |
| E4K08_RS28335 () | 5159436..5161091 | + | 1656 | WP_103072897.1 | iron ABC transporter permease | - |
| E4K08_RS28340 () | 5161168..5162013 | + | 846 | WP_004861668.1 | N-hydroxyarylamine O-acetyltransferase | - |
| E4K08_RS28345 () | 5162468..5162878 | - | 411 | WP_004861671.1 | tautomerase family protein | - |
| E4K08_RS28350 () | 5162889..5163203 | - | 315 | WP_004861674.1 | carboxymuconolactone decarboxylase family protein | - |
| E4K08_RS28355 () | 5163309..5164217 | + | 909 | WP_137056688.1 | LysR family transcriptional regulator | - |
| E4K08_RS28360 () | 5164263..5164535 | - | 273 | WP_032717404.1 | hypothetical protein | - |
| E4K08_RS28365 () | 5164728..5165408 | - | 681 | WP_004861681.1 | respiratory nitrate reductase subunit gamma | - |
| E4K08_RS28370 () | 5165405..5166100 | - | 696 | WP_137056573.1 | nitrate reductase molybdenum cofactor assembly chaperone | - |
| E4K08_RS28375 () | 5166100..5167626 | - | 1527 | WP_015584391.1 | nitrate reductase subunit beta | - |
| E4K08_RS28380 () | 5167623..5171363 | - | 3741 | WP_137056574.1 | nitrate reductase subunit alpha | - |
| E4K08_RS28385 () | 5171501..5172889 | - | 1389 | WP_118842274.1 | NarK family nitrate/nitrite MFS transporter | - |
| E4K08_RS28390 () | 5173166..5173756 | - | 591 | WP_032717407.1 | TetR family transcriptional regulator | - |
| E4K08_RS28395 () | 5173875..5175365 | + | 1491 | WP_004861697.1 | MFS transporter | - |
| E4K08_RS28400 () | 5175368..5176165 | - | 798 | WP_015584389.1 | helix-turn-helix domain-containing protein | - |
| E4K08_RS28405 () | 5176425..5177543 | + | 1119 | WP_137056575.1 | muconate cycloisomerase family protein | - |
| E4K08_RS28410 () | 5177563..5177853 | + | 291 | WP_004861704.1 | muconolactone Delta-isomerase | - |
| E4K08_RS28415 () | 5177931..5178857 | + | 927 | WP_137056576.1 | catechol 1,2-dioxygenase | - |
| E4K08_RS28420 () | 5179002..5180384 | + | 1383 | Protein_4779 | Rieske 2Fe-2S domain-containing protein | - |
| E4K08_RS28425 () | 5180384..5180869 | + | 486 | WP_137056577.1 | benzoate 1,2-dioxygenase small subunit | - |
| E4K08_RS28430 () | 5180879..5181892 | + | 1014 | WP_137056578.1 | ring-hydroxylating dioxygenase ferredoxin reductase family protein | - |
| E4K08_RS28435 () | 5181902..5182675 | + | 774 | WP_004861716.1 | 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase | - |
| E4K08_RS28440 () | 5182672..5183550 | - | 879 | WP_004861717.1 | aromatic amino acid DMT transporter YddG | - |
| E4K08_RS28445 () | 5183774..5186821 | + | 3048 | WP_137056579.1 | formate dehydrogenase-N subunit alpha | - |
| E4K08_RS28450 () | 5186833..5187717 | + | 885 | WP_015584385.1 | formate dehydrogenase subunit beta | - |
| E4K08_RS28455 () | 5187710..5188363 | + | 654 | WP_137056689.1 | formate dehydrogenase-N subunit gamma | - |
| E4K08_RS28460 () | 5188415..5188846 | - | 432 | WP_137056580.1 | VOC family protein | - |
| E4K08_RS28465 () | 5189005..5189823 | - | 819 | WP_004861730.1 | polyphosphate kinase 2 | - |
| E4K08_RS28470 () | 5190124..5190456 | + | 333 | WP_004861735.1 | hypothetical protein | - |
| E4K08_RS28475 () | 5190674..5191843 | + | 1170 | WP_137056581.1 | MFS transporter AraJ | - |
| E4K08_RS28480 () | 5191840..5192934 | - | 1095 | WP_137056582.1 | alkylhydroperoxidase domain protein | - |
| E4K08_RS28485 () | 5192943..5193932 | - | 990 | WP_099144445.1 | putative FMN-dependent luciferase-like monooxygenase | - |
| E4K08_RS28490 () | 5193929..5195533 | - | 1605 | WP_004861748.1 | ABC transporter ATP-binding protein | - |
| E4K08_RS28495 () | 5195530..5196381 | - | 852 | WP_004861751.1 | ABC transporter permease | - |
| E4K08_RS28500 () | 5196378..5197322 | - | 945 | WP_004861753.1 | ABC transporter permease | - |
| E4K08_RS28505 () | 5197333..5198955 | - | 1623 | WP_137056583.1 | TIGR04028 family ABC transporter substrate-binding protein | - |
| E4K08_RS28510 () | 5199161..5200171 | - | 1011 | WP_137056584.1 | alcohol dehydrogenase AdhP | - |
| E4K08_RS28515 () | 5200427..5201026 | + | 600 | WP_004861761.1 | inorganic diphosphatase | - |
| E4K08_RS28520 () | 5201227..5202204 | + | 978 | WP_097357863.1 | bifunctional helix-turn-helix transcriptional regulator/GNAT family N-acetyltransferase | - |
| E4K08_RS28525 () | 5202270..5203982 | - | 1713 | WP_064359361.1 | ATP-binding cassette domain-containing protein | - |
| E4K08_RS28530 () | 5204658..5205227 | - | 570 | WP_088402646.1 | M15 family metallopeptidase | - |
| E4K08_RS28535 () | 5205484..5207181 | - | 1698 | WP_004861771.1 | NAD-dependent malic enzyme | - |
| E4K08_RS28540 () | 5207354..5207494 | - | 141 | WP_004861775.1 | stationary-phase-induced ribosome-associated protein | - |
| E4K08_RS28545 () | 5207652..5208503 | - | 852 | WP_004861778.1 | MBL fold metallo-hydrolase | - |
| E4K08_RS28550 () | 5208617..5209501 | + | 885 | WP_004861781.1 | LysR family transcriptional regulator | - |
| E4K08_RS28555 () | 5209792..5210223 | + | 432 | WP_032717428.1 | OsmC family protein | - |
| E4K08_RS28560 () | 5210348..5211217 | + | 870 | WP_004861787.1 | DUF2236 domain-containing protein | - |
| E4K08_RS28565 () | 5211633..5212550 | + | 918 | WP_004861790.1 | hypothetical protein | - |
| E4K08_RS28570 () | 5212765..5215065 | + | 2301 | WP_004861793.1 | FdhF/YdeP family oxidoreductase | - |
| E4K08_RS28575 () | 5215112..5215732 | - | 621 | WP_032717430.1 | LysE family translocator | - |
| E4K08_RS28580 () | 5215816..5216616 | - | 801 | WP_137056585.1 | AraC family transcriptional regulator | - |
| E4K08_RS28585 () | 5216802..5217683 | + | 882 | WP_004861802.1 | LysR family transcriptional regulator | - |
| E4K08_RS28590 () | 5217819..5219228 | - | 1410 | WP_004861807.1 | MFS transporter | - |
| E4K08_RS28595 () | 5219448..5220470 | - | 1023 | WP_015584362.1 | ABC transporter substrate-binding protein | - |
| E4K08_RS28600 () | 5220479..5222602 | - | 2124 | WP_015584361.1 | TonB-dependent siderophore receptor | - |
| E4K08_RS28605 () | 5222976..5224001 | + | 1026 | WP_073972284.1 | cell division protein ZapE | - |
| E4K08_RS28610 () | 5224053..5226230 | - | 2178 | WP_004861819.1 | catalase/peroxidase HPI | - |
| E4K08_RS28615 () | 5226952..5228010 | + | 1059 | WP_004861822.1 | putative urea ABC transporter substrate-binding protein | - |
| E4K08_RS28620 () | 5228035..5228850 | + | 816 | WP_004861825.1 | ABC transporter permease subunit | - |
| E4K08_RS28625 () | 5228847..5229626 | + | 780 | WP_004861827.1 | ABC transporter ATP-binding protein | - |
| E4K08_RS28630 () | 5229631..5230359 | + | 729 | WP_004861830.1 | urea carboxylase-associated family protein | - |
| E4K08_RS28635 () | 5230370..5231005 | + | 636 | WP_137056586.1 | urea carboxylase-associated family protein | - |
| E4K08_RS28640 () | 5231174..5234779 | + | 3606 | WP_104896199.1 | urea carboxylase | - |
| E4K08_RS28645 () | 5234776..5236575 | + | 1800 | WP_137056587.1 | allophanate hydrolase | - |
| E4K08_RS28650 () | 5236798..5238720 | + | 1923 | WP_175406678.1 | penicillin-binding protein 2 | - |
| E4K08_RS28655 () | 5238867..5240246 | - | 1380 | WP_004861845.1 | sugar porter family MFS transporter | - |
| E4K08_RS28660 () | 5240248..5240754 | - | 507 | WP_088402654.1 | D-ribose pyranase | - |
| E4K08_RS28665 () | 5240834..5242216 | - | 1383 | WP_088402655.1 | sugar porter family MFS transporter | - |
| E4K08_RS28670 () | 5242231..5243196 | - | 966 | WP_015584352.1 | tagatose-6-phosphate kinase | - |
| E4K08_RS28675 () | 5243193..5244536 | - | 1344 | WP_137056588.1 | carbohydrate kinase | - |
| E4K08_RS28680 () | 5244561..5245958 | - | 1398 | WP_137056589.1 | FAD-binding oxidoreductase | - |
| E4K08_RS28685 () | 5246127..5246978 | + | 852 | WP_004861860.1 | hypothetical protein | - |
| E4K08_RS28690 () | 5246994..5247980 | + | 987 | WP_004861863.1 | hypothetical protein | - |
| E4K08_RS28695 () | 5248140..5248880 | + | 741 | WP_015584350.1 | glutamine amidotransferase | - |
| E4K08_RS28700 () | 5249067..5250059 | + | 993 | WP_032717440.1 | alpha/beta hydrolase | - |
| E4K08_RS28705 () | 5250144..5250884 | + | 741 | WP_015584348.1 | response regulator | - |
| E4K08_RS28710 () | 5250881..5252242 | + | 1362 | WP_137056590.1 | HAMP domain-containing protein | - |
| E4K08_RS28715 () | 5252327..5253517 | + | 1191 | WP_032717442.1 | redoxin domain-containing protein | - |
| E4K08_RS28720 () | 5253742..5255223 | - | 1482 | WP_165551901.1 | aspartate aminotransferase family protein | - |
| E4K08_RS28725 () | 5255233..5256618 | - | 1386 | WP_015584344.1 | diaminobutyrate--2-oxoglutarate transaminase | - |
| E4K08_RS28730 () | 5256925..5257860 | - | 936 | WP_048023550.1 | ABC transporter substrate-binding protein | - |
| E4K08_RS28735 () | 5257870..5258610 | - | 741 | WP_004861892.1 | ABC transporter permease | - |
| E4K08_RS28740 () | 5258607..5259335 | - | 729 | WP_048756848.1 | ABC transporter ATP-binding protein | - |
| E4K08_RS28745 () | 5259332..5260024 | - | 693 | WP_137056591.1 | TenA family protein | - |
| E4K08_RS28750 () | 5260485..5261612 | + | 1128 | WP_004861901.1 | BamA/TamA family outer membrane protein | - |
| E4K08_RS28755 () | 5261630..5262589 | + | 960 | WP_015584341.1 | hypothetical protein | - |
| E4K08_RS28760 () | 5262643..5263749 | + | 1107 | WP_069475944.1 | DUF4056 domain-containing protein | - |
| E4K08_RS28765 () | 5263978..5265219 | + | 1242 | WP_137056592.1 | sensor domain-containing diguanylate cyclase | - |
| E4K08_RS28770 () | 5265239..5265871 | + | 633 | WP_064357056.1 | class I SAM-dependent methyltransferase | - |
| E4K08_RS28775 () | 5266086..5267039 | + | 954 | WP_004861921.1 | hypothetical protein | - |
| E4K08_RS28780 () | 5267172..5267597 | + | 426 | WP_032724724.1 | hypothetical protein | - |
| E4K08_RS28785 () | 5267603..5268157 | + | 555 | WP_137056593.1 | RNA polymerase sigma factor | - |
| E4K08_RS28790 () | 5268361..5268633 | + | 273 | WP_032717448.1 | type II toxin-antitoxin system antitoxin HipB | Antitoxin Detail |
| E4K08_RS28795 () | 5268633..5269964 | + | 1332 | WP_015584335.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| E4K08_RS28800 () | 5269897..5271303 | - | 1407 | WP_137056690.1 | glycoside hydrolase family 10 protein | - |
| E4K08_RS28805 () | 5272018..5273076 | + | 1059 | WP_162180097.1 | branched-chain amino acid ABC transporter substrate-binding protein | - |
| E4K08_RS28810 () | 5273176..5274090 | + | 915 | WP_015584333.1 | branched-chain amino acid ABC transporter permease | - |
| E4K08_RS28815 () | 5274101..5275387 | + | 1287 | WP_137056594.1 | high-affinity branched-chain amino acid ABC transporter permease LivM | - |
| E4K08_RS28820 () | 5275384..5276259 | + | 876 | WP_015584331.1 | ATP-binding cassette domain-containing protein | - |
| E4K08_RS28825 () | 5276256..5276972 | + | 717 | WP_004861956.1 | ABC transporter ATP-binding protein | - |
| E4K08_RS28830 () | 5277234..5278109 | + | 876 | Protein_4861 | NAD(P)-dependent oxidoreductase | - |
| E4K08_RS30770 () | 5278829..5278987 | + | 159 | WP_004861965.1 | hypothetical protein | - |
| E4K08_RS28840 () | 5279997..5280719 | + | 723 | WP_137056595.1 | hypothetical protein | - |
| E4K08_RS28845 () | 5280916..5282097 | + | 1182 | WP_137056691.1 | MBL fold metallo-hydrolase | - |
| E4K08_RS28850 () | 5282094..5283866 | + | 1773 | WP_137056596.1 | serine protease | - |
| E4K08_RS28855 () | 5283921..5287826 | + | 3906 | WP_137056597.1 | hypothetical protein | - |
| E4K08_RS28860 () | 5287854..5288102 | + | 249 | WP_137056598.1 | hypothetical protein | - |
| E4K08_RS28865 () | 5288328..5293280 | + | 4953 | WP_137056692.1 | AAA family ATPase | - |
| E4K08_RS28870 () | 5293277..5294704 | + | 1428 | WP_137056599.1 | hypothetical protein | - |
| E4K08_RS28875 () | 5295092..5296060 | - | 969 | Protein_4870 | HsdR | - |
| E4K08_RS28880 () | 5296150..5296713 | - | 564 | WP_098141108.1 | hypothetical protein | - |
| E4K08_RS28885 () | 5296725..5299046 | - | 2322 | WP_137056600.1 | hypothetical protein | - |
| E4K08_RS28895 () | 5300262..5301467 | - | 1206 | WP_175406679.1 | site-specific integrase | - |
| E4K08_RS28900 () | 5301659..5302387 | - | 729 | WP_137056602.1 | integrase | - |
| E4K08_RS28905 () | 5302662..5304065 | + | 1404 | WP_001567368.1 | ISNCY-like element ISKpn21 family transposase | - |
| E4K08_RS28910 () | 5304094..5304726 | - | 633 | WP_001567369.1 | hypothetical protein | - |
| E4K08_RS28915 () | 5304952..5306298 | + | 1347 | WP_137056603.1 | ISNCY family transposase | - |
| E4K08_RS28920 () | 5306347..5306751 | + | 405 | WP_137056604.1 | helix-turn-helix domain-containing protein | - |
| E4K08_RS30775 () | 5306847..5307197 | - | 351 | WP_044351090.1 | hypothetical protein | - |
| E4K08_RS28930 () | 5307382..5307864 | - | 483 | WP_044351088.1 | GNAT family N-acetyltransferase | Toxin Detail |
| E4K08_RS28935 () | 5307855..5308133 | - | 279 | WP_015584326.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| E4K08_RS28940 () | 5308614..5309111 | - | 498 | WP_137056693.1 | hypothetical protein | - |
| E4K08_RS28945 () | 5309302..5309999 | + | 698 | Protein_4884 | IS1 family transposase | - |
| E4K08_RS28950 () | 5310104..5311978 | - | 1875 | WP_071359406.1 | KUP/HAK/KT family potassium transporter | - |
| E4K08_RS28955 () | 5312002..5312547 | - | 546 | WP_044351084.1 | DUF1003 domain-containing protein | - |
| E4K08_RS28960 () | 5312740..5313744 | - | 1005 | WP_000427623.1 | IS110-like element IS4321 family transposase | - |
| E4K08_RS28965 () | 5314171..5314521 | - | 351 | WP_032724357.1 | hypothetical protein | - |
| E4K08_RS28970 () | 5314665..5315099 | - | 435 | WP_032717454.1 | GNAT family N-acetyltransferase | - |
| E4K08_RS28975 () | 5315390..5316709 | - | 1320 | WP_137056605.1 | PLP-dependent aminotransferase family protein | - |
| E4K08_RS28980 () | 5316813..5317703 | + | 891 | WP_137056606.1 | DMT family transporter | - |
| E4K08_RS28985 () | 5317766..5318128 | - | 363 | WP_004862083.1 | glyoxalase/bleomycin resistance/dioxygenase family protein | - |
| E4K08_RS28990 () | 5318238..5318693 | - | 456 | WP_004862084.1 | helix-turn-helix transcriptional regulator | - |
| E4K08_RS28995 () | 5318836..5320071 | + | 1236 | WP_137056607.1 | MFS transporter | - |
| E4K08_RS29000 () | 5320068..5320952 | - | 885 | WP_015584316.1 | LysR family transcriptional regulator | - |
| E4K08_RS29005 () | 5321061..5321642 | + | 582 | WP_075808547.1 | nuclear transport factor 2 family protein | - |
| E4K08_RS29010 () | 5321842..5322450 | + | 609 | WP_004862093.1 | galactoside O-acetyltransferase | - |
| E4K08_RS29015 () | 5322490..5323038 | + | 549 | WP_004862095.1 | DUF924 domain-containing protein | - |
| E4K08_RS29020 () | 5323150..5323752 | - | 603 | WP_137056608.1 | DNA/RNA non-specific endonuclease | - |
| E4K08_RS29025 () | 5324248..5325492 | - | 1245 | WP_088883961.1 | sigma-54 dependent transcriptional regulator | - |
| E4K08_RS29030 () | 5325458..5327485 | - | 2028 | WP_086816610.1 | HAMP domain-containing protein | - |
| E4K08_RS29035 () | 5327482..5328675 | - | 1194 | WP_137056694.1 | ABC transporter substrate-binding protein | - |
| E4K08_RS29040 () | 5329202..5330587 | + | 1386 | WP_064359329.1 | phosphoglycerate transporter PgtP | - |
| E4K08_RS29045 () | 5330659..5331929 | - | 1271 | Protein_4904 | oxalate/formate MFS antiporter | - |
| E4K08_RS29050 () | 5332247..5332726 | + | 480 | WP_004862110.1 | GNAT family N-acetyltransferase | - |
| E4K08_RS29055 () | 5332739..5333938 | - | 1200 | WP_004862113.1 | MFS transporter | - |
| E4K08_RS29060 () | 5334047..5334994 | + | 948 | WP_004862114.1 | AraC family transcriptional regulator | - |
| E4K08_RS29065 () | 5335012..5335293 | - | 282 | WP_004862116.1 | VF530 family protein | - |
| E4K08_RS29070 () | 5335579..5336607 | + | 1029 | WP_004862120.1 | isopenicillin N synthase family oxygenase | - |
| E4K08_RS29075 () | 5336631..5337437 | + | 807 | WP_004862122.1 | MetQ/NlpA family ABC transporter substrate-binding protein | - |
| E4K08_RS29080 () | 5337434..5338225 | + | 792 | WP_004862124.1 | ATP-binding cassette domain-containing protein | - |
| E4K08_RS29085 () | 5338222..5338881 | + | 660 | WP_160873165.1 | ABC transporter permease | - |
| E4K08_RS29090 () | 5338908..5339984 | - | 1077 | WP_069475937.1 | nitronate monooxygenase | - |
| E4K08_RS29095 () | 5340076..5340918 | + | 843 | WP_015584306.1 | LysR family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|