MGE detailed information
MGE type: Prophage MGE length: 72900 bp
Accession: NZ_CP037945 Location: 5216565..5289464 Organism: Escherichia coli strain CFSAN027346 Replicon: chromosome
Accession: NZ_CP037945 Location: 5216565..5289464 Organism: Escherichia coli strain CFSAN027346 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EKI52_RS26825 () | 5212708..5214519 | + | 1812 | WP_001069467.1 | phosphogluconate dehydratase | - |
| EKI52_RS26830 () | 5214556..5215197 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| EKI52_RS26835 () | 5215253..5216431 | - | 1179 | WP_000173494.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| EKI52_RS26840 () | 5216565..5216855 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| EKI52_RS26845 () | 5216922..5217278 | + | 357 | WP_001295500.1 | protein YebF | - |
| EKI52_RS26850 () | 5217605..5218264 | + | 660 | WP_000024745.1 | tellurite resistance TerB family protein | - |
| EKI52_RS26855 () | 5218473..5220533 | + | 2061 | WP_000936951.1 | oligopeptidase B | - |
| EKI52_RS26860 () | 5220530..5221192 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| EKI52_RS26865 () | 5221216..5221872 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| EKI52_RS26870 () | 5221974..5222204 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| EKI52_RS26875 () | 5222343..5222717 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| EKI52_RS26880 () | 5222721..5223593 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| EKI52_RS26885 () | 5223606..5223947 | + | 342 | WP_000976492.1 | YebY family protein | - |
| EKI52_RS26890 () | 5224300..5225415 | - | 1116 | WP_001189092.1 | hypothetical protein ; Integrase | Integrase |
| EKI52_RS26895 () | 5225381..5225662 | - | 282 | WP_001443927.1 | excisionase | - |
| EKI52_RS26900 () | 5225769..5225957 | - | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - () | 5225773..5225951 | + | 179 | NuclAT_1 | - | Antitoxin Detail |
| - () | 5225773..5225951 | + | 179 | NuclAT_1 | - | Antitoxin Detail |
| - () | 5225773..5225951 | + | 179 | NuclAT_1 | - | Antitoxin Detail |
| - () | 5225773..5225951 | + | 179 | NuclAT_1 | - | Antitoxin Detail |
| EKI52_RS26905 () | 5225950..5226144 | - | 195 | WP_042853000.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| EKI52_RS26910 () | 5226201..5227010 | - | 810 | WP_000166317.1 | recombination protein RecT | - |
| EKI52_RS26915 () | 5227003..5229654 | - | 2652 | WP_000105101.1 | exodeoxyribonuclease VIII | - |
| EKI52_RS26920 () | 5229753..5230028 | - | 276 | WP_001307773.1 | hypothetical protein | - |
| EKI52_RS26925 () | 5230102..5230278 | - | 177 | WP_000245534.1 | hypothetical protein | - |
| EKI52_RS26930 () | 5230272..5230493 | - | 222 | WP_000560218.1 | killing protein KilR | - |
| EKI52_RS26935 () | 5230914..5231066 | - | 153 | WP_001427316.1 | DUF1391 family protein | - |
| EKI52_RS26940 () | 5231353..5231631 | - | 279 | WP_001448501.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| EKI52_RS26945 () | 5231633..5231824 | - | 192 | WP_001302048.1 | hypothetical protein | Antitoxin Detail |
| EKI52_RS26950 () | 5231845..5232216 | - | 372 | WP_001169687.1 | hypothetical protein | - |
| EKI52_RS26955 () | 5232314..5232616 | + | 303 | WP_000172738.1 | transcriptional regulator | - |
| EKI52_RS26960 () | 5232613..5233038 | + | 426 | WP_000693943.1 | Rha family transcriptional regulator | - |
| EKI52_RS26965 () | 5233061..5234023 | + | 963 | WP_001444941.1 | helix-turn-helix domain-containing protein | - |
| EKI52_RS26970 () | 5234030..5234771 | + | 742 | Protein_5135 | ATP-binding protein | - |
| EKI52_RS26975 () | 5234797..5235558 | + | 762 | WP_000450872.1 | DUF1627 domain-containing protein | - |
| EKI52_RS26980 () | 5235591..5235872 | + | 282 | WP_000603384.1 | DNA-binding protein | - |
| EKI52_RS26985 () | 5235869..5236096 | + | 228 | WP_000699809.1 | hypothetical protein | - |
| EKI52_RS26990 () | 5236089..5236400 | + | 312 | WP_001289673.1 | hypothetical protein | - |
| EKI52_RS26995 () | 5236528..5236746 | + | 219 | WP_000683609.1 | DUF4014 family protein | - |
| EKI52_RS27000 () | 5236748..5237305 | + | 558 | WP_000104474.1 | DUF551 domain-containing protein | - |
| EKI52_RS27005 () | 5237596..5237751 | + | 156 | WP_000813258.1 | type I toxin-antitoxin system Hok family toxin | - |
| EKI52_RS27010 () | 5237871..5238215 | + | 345 | WP_000756596.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| EKI52_RS27015 () | 5238337..5238609 | + | 273 | WP_000191872.1 | hypothetical protein | - |
| EKI52_RS27020 () | 5238611..5239660 | + | 1050 | WP_001265229.1 | DUF968 domain-containing protein | - |
| EKI52_RS27025 () | 5239673..5240047 | + | 375 | WP_001217413.1 | RusA family crossover junction endodeoxyribonuclease | - |
| EKI52_RS27030 () | 5240044..5240865 | + | 822 | WP_000762928.1 | antitermination protein | - |
| EKI52_RS27035 () | 5241103..5241465 | + | 363 | Protein_5148 | tellurite resistance TerB family protein | - |
| EKI52_RS27040 () | 5241462..5241684 | + | 223 | Protein_5149 | DUF3927 family protein | - |
| EKI52_RS27045 () | 5242050..5243900 | + | 1851 | WP_000143049.1 | SASA family carbohydrate esterase | - |
| EKI52_RS27050 () | 5244339..5244554 | + | 216 | WP_024164617.1 | class II holin family protein | - |
| EKI52_RS27055 () | 5244554..5245051 | + | 498 | WP_000075132.1 | lysozyme RrrD | - |
| EKI52_RS27060 () | 5245048..5245485 | + | 438 | WP_000092330.1 | lysis protein | - |
| EKI52_RS27065 () | 5245635..5246252 | + | 618 | WP_000881326.1 | Rha family transcriptional regulator | - |
| EKI52_RS27070 () | 5246440..5246634 | - | 195 | WP_001307652.1 | YlcI/YnfO family protein | - |
| EKI52_RS27075 () | 5247023..5247568 | + | 546 | WP_000453587.1 | DNA-packaging protein | - |
| EKI52_RS27080 () | 5247543..5249468 | + | 1926 | WP_001027379.1 | phage terminase large subunit family protein | - |
| EKI52_RS27085 () | 5249465..5249671 | + | 207 | WP_000198153.1 | gpW family protein | - |
| EKI52_RS27090 () | 5249668..5251269 | + | 1602 | WP_001443752.1 | phage portal protein | - |
| EKI52_RS27095 () | 5251250..5252569 | + | 1320 | WP_000123251.1 | S49 family peptidase | - |
| EKI52_RS27100 () | 5252579..5252911 | + | 333 | WP_001365129.1 | head decoration protein | - |
| EKI52_RS27105 () | 5252967..5253992 | + | 1026 | WP_000063258.1 | major capsid protein | - |
| EKI52_RS27110 () | 5254034..5254429 | + | 396 | WP_000158897.1 | DNA-packaging protein FI | - |
| EKI52_RS27115 () | 5254441..5254794 | + | 354 | WP_000752994.1 | head-tail joining protein | - |
| EKI52_RS27120 () | 5254806..5255384 | + | 579 | WP_000975096.1 | phage tail protein | - |
| EKI52_RS27125 () | 5255381..5255776 | + | 396 | WP_000683137.1 | phage minor tail U family protein | - |
| EKI52_RS27130 () | 5255784..5256536 | + | 753 | WP_000235098.1 | Ig domain-containing protein | - |
| EKI52_RS27135 () | 5256550..5256972 | + | 423 | WP_000479045.1 | phage minor tail protein G | - |
| EKI52_RS27140 () | 5256999..5257412 | + | 414 | WP_000533440.1 | phage tail assembly protein T | - |
| EKI52_RS27145 () | 5257393..5260005 | + | 2613 | WP_000081762.1 | phage tail tape measure protein | - |
| EKI52_RS27150 () | 5260002..5260331 | + | 330 | WP_000847298.1 | phage tail protein | - |
| EKI52_RS27155 () | 5260331..5261029 | + | 699 | WP_001357740.1 | phage minor tail protein L | - |
| EKI52_RS27160 () | 5261040..5261783 | + | 744 | WP_000194723.1 | C40 family peptidase | - |
| EKI52_RS27165 () | 5261729..5262361 | + | 633 | WP_050439450.1 | tail assembly protein | - |
| EKI52_RS27170 () | 5262704..5266099 | + | 3396 | WP_000514713.1 | host specificity protein J | - |
| EKI52_RS27175 () | 5266238..5266642 | + | 405 | WP_000839165.1 | IS66 family transposase ISEc22 | Transposase |
| EKI52_RS27180 () | 5266639..5266986 | + | 348 | WP_000612626.1 | IS66 family transposase ISKpn24 | Transposase |
| EKI52_RS27185 () | 5267035..5268573 | + | 1539 | WP_000099160.1 | IS66 family transposase ISEc22 | Transposase |
| EKI52_RS27190 () | 5268629..5269228 | + | 600 | WP_001230428.1 | hypothetical protein | VF |
| EKI52_RS27195 () | 5269293..5270606 | + | 1314 | WP_000268926.1 | ISNCY family transposase KIS | Transposase |
| EKI52_RS27200 () | 5270608..5270877 | + | 270 | WP_001023379.1 | phage tail fiber C-terminal domain-containing protein | - |
| EKI52_RS27205 () | 5271018..5271893 | + | 876 | WP_000491545.1 | hypothetical protein | VF |
| EKI52_RS27215 () | 5272118..5272768 | - | 651 | WP_001121225.1 | hypothetical protein | VF |
| EKI52_RS27220 () | 5272772..5273038 | - | 267 | Protein_5184 | hypothetical protein | - |
| EKI52_RS27225 () | 5273723..5274379 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| EKI52_RS27230 () | 5274380..5274571 | - | 192 | WP_001296140.1 | YebW family protein | - |
| EKI52_RS27235 () | 5274676..5274912 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| EKI52_RS27240 () | 5275030..5276469 | - | 1440 | WP_000057024.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| EKI52_RS27245 () | 5276549..5279182 | - | 2634 | WP_001299674.1 | hypothetical protein | VF |
| EKI52_RS27250 () | 5279151..5280434 | - | 1284 | WP_001207284.1 | membrane integrity lipid transport subunit YebS | - |
| EKI52_RS27255 () | 5280564..5281061 | + | 498 | WP_001043882.1 | L-methionine (R)-S-oxide reductase | - |
| EKI52_RS27260 () | 5281158..5281856 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| EKI52_RS27265 () | 5281876..5283924 | + | 2049 | WP_001431407.1 | carboxy terminal-processing peptidase | - |
| EKI52_RS27270 () | 5284116..5284997 | + | 882 | WP_000984517.1 | protease HtpX | - |
| EKI52_RS27275 () | 5285043..5286416 | - | 1374 | WP_001127210.1 | MFS transporter | - |
| EKI52_RS27280 () | 5286593..5287384 | + | 792 | WP_001262174.1 | DNA-binding transcriptional regulator KdgR | - |
| EKI52_RS27285 () | 5287527..5287766 | - | 240 | WP_001211011.1 | hypothetical protein | - |
| EKI52_RS27290 () | 5287925..5288068 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| EKI52_RS27295 () | 5288143..5288430 | + | 288 | WP_001006866.1 | YebO family protein | - |
| EKI52_RS27300 () | 5289099..5289242 | + | 144 | WP_001295496.1 | YobF family protein | - |
| EKI52_RS27305 () | 5289255..5289464 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| EKI52_RS27310 () | 5289630..5290439 | + | 810 | WP_000010107.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| EKI52_RS27315 () | 5290436..5291002 | - | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| EKI52_RS27320 () | 5291431..5291889 | - | 459 | WP_000156255.1 | DUF986 family protein | - |
| EKI52_RS27325 () | 5291944..5292795 | - | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| EKI52_RS27330 () | 5292808..5293608 | - | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|