MGE detailed information
MGE type: Prophage MGE length: 63536 bp
Accession: NZ_CP035865 Location: 1971729..2035264 Organism: Escherichia coli strain E275 a Replicon: chromosome
Accession: NZ_CP035865 Location: 1971729..2035264 Organism: Escherichia coli strain E275 a Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXE34_RS09510 (1967628) | 1967628..1968848 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| EXE34_RS09515 (1968973) | 1968973..1969668 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| EXE34_RS09520 (1969621) | 1969621..1970913 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| EXE34_RS09525 (1971072) | 1971072..1971686 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| EXE34_RS09530 (1971729) | 1971729..1972583 | - | 855 | WP_000526477.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| EXE34_RS09535 (1972585) | 1972585..1973202 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| EXE34_RS09540 (1973213) | 1973213..1975636 | - | 2424 | WP_072169196.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| EXE34_RS09545 (1975697) | 1975697..1978123 | - | 2427 | WP_159382520.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| EXE34_RS09550 (1978322) | 1978322..1978627 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| EXE34_RS09555 (1978735) | 1978735..1979445 | + | 711 | WP_072104773.1 | YnfC family lipoprotein | - |
| EXE34_RS09560 (1979448) | 1979448..1980008 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| EXE34_RS09565 (1980043) | 1980043..1980384 | - | 342 | WP_000705197.1 | DUF1283 family protein | - |
| EXE34_RS09570 (1980519) | 1980519..1980845 | + | 327 | WP_001295395.1 | YnfA family protein | - |
| EXE34_RS09575 (1981051) | 1981051..1982265 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| EXE34_RS09580 (1982277) | 1982277..1983296 | + | 1020 | WP_000836059.1 | Zn-dependent oxidoreductase | - |
| EXE34_RS09585 (1983484) | 1983484..1983861 | - | 378 | Protein_1898 | tyrosine-type recombinase/integrase | - |
| EXE34_RS09590 (1983893) | 1983893..1985464 | - | 1572 | WP_000381402.1 | IS66 family transposase ISCro1 | Transposase |
| EXE34_RS09595 (1985484) | 1985484..1985831 | - | 348 | WP_000624622.1 | IS66 family transposase ISCro1 | Transposase |
| EXE34_RS09600 (1985831) | 1985831..1986508 | - | 678 | WP_001339397.1 | IS66 family transposase ISCro1 | Transposase |
| EXE34_RS09605 (1986563) | 1986563..1987471 | - | 909 | Protein_1902 | IS91 family transposase ISTha3 | Transposase |
| EXE34_RS09610 (1987506) | 1987506..1987757 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| EXE34_RS09615 (1987830) | 1987830..1990301 | - | 2472 | WP_001515375.1 | exonuclease | - |
| EXE34_RS09620 (1990395) | 1990395..1990586 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| EXE34_RS09625 (1990583) | 1990583..1990771 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| EXE34_RS09630 (1991339) | 1991339..1991557 | - | 219 | WP_001171952.1 | protein YdfC | - |
| EXE34_RS09635 (1991717) | 1991717..1991872 | - | 156 | WP_000379588.1 | DUF1391 family protein | - |
| EXE34_RS09640 (1992041) | 1992041..1992448 | - | 408 | WP_000381212.1 | helix-turn-helix domain-containing protein | - |
| EXE34_RS09645 (1992530) | 1992530..1992757 | + | 228 | WP_000921596.1 | Cro/CI family transcriptional regulator | - |
| EXE34_RS09650 (1992741) | 1992741..1993262 | + | 522 | WP_000705355.1 | toxin YdaT family protein | - |
| EXE34_RS09655 (1993243) | 1993243..1994208 | + | 966 | WP_000054514.1 | hypothetical protein | - |
| EXE34_RS09660 (1994249) | 1994249..1994671 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| EXE34_RS09665 (1994668) | 1994668..1995157 | + | 490 | Protein_1914 | class I SAM-dependent methyltransferase | - |
| EXE34_RS09675 (1995635) | 1995635..1996055 | + | 421 | Protein_1915 | hypothetical protein | - |
| EXE34_RS09680 (1996711) | 1996711..1997760 | + | 1050 | Protein_1916 | ISNCY family transposase ISCARN112 | Transposase |
| EXE34_RS26660 (1997881) | 1997881..1998030 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| EXE34_RS09685 (1998467) | 1998467..1998799 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| EXE34_RS09690 (1999002) | 1999002..1999307 | - | 306 | WP_071593935.1 | protein YdfV | - |
| EXE34_RS09695 (1999332) | 1999332..1999571 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| EXE34_RS09700 (1999571) | 1999571..1999858 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| EXE34_RS09705 (1999930) | 1999930..2000085 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| EXE34_RS09710 (2000302) | 2000302..2000553 | + | 252 | WP_001463433.1 | protein Rem | - |
| EXE34_RS09715 (2000620) | 2000620..2000898 | + | 279 | WP_040091072.1 | hypothetical protein | - |
| EXE34_RS09720 (2000900) | 2000900..2001949 | + | 1050 | WP_016247238.1 | DUF968 domain-containing protein | - |
| EXE34_RS09725 (2001963) | 2001963..2002715 | + | 753 | WP_001047135.1 | antitermination protein | - |
| EXE34_RS09730 (2002993) | 2002993..2003082 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| EXE34_RS09735 (2003137) | 2003137..2003349 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| EXE34_RS09740 (2003650) | 2003650..2003865 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| EXE34_RS09745 (2004229) | 2004229..2004399 | - | 171 | WP_001405948.1 | putative zinc-binding protein YnfU | - |
| EXE34_RS09750 (2004619) | 2004619..2004834 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| EXE34_RS09755 (2004839) | 2004839..2005150 | + | 312 | WP_000189915.1 | YdfR family protein | - |
| EXE34_RS09760 (2005147) | 2005147..2005680 | + | 534 | WP_001092971.1 | lysozyme | - |
| EXE34_RS09765 (2005677) | 2005677..2006174 | + | 498 | WP_001071766.1 | DUF2514 domain-containing protein | - |
| EXE34_RS09770 (2006538) | 2006538..2006750 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| EXE34_RS09775 (2006761) | 2006761..2006949 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| EXE34_RS09780 (2006952) | 2006952..2007017 | + | 66 | WP_122134696.1 | small protein YnfR | - |
| EXE34_RS09785 (2007097) | 2007097..2007252 | + | 156 | WP_001309517.1 | protein YnfN | - |
| EXE34_RS09790 (2007424) | 2007424..2007597 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| EXE34_RS09795 (2007749) | 2007749..2008159 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| EXE34_RS09800 (2008217) | 2008217..2008450 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| EXE34_RS09805 (2008839) | 2008839..2009384 | + | 546 | WP_000453576.1 | DNA-packaging protein | - |
| EXE34_RS09810 (2009359) | 2009359..2011284 | + | 1926 | WP_159382580.1 | phage terminase large subunit family protein | - |
| EXE34_RS09815 (2011281) | 2011281..2011487 | + | 207 | WP_000198153.1 | gpW family protein | - |
| EXE34_RS09820 (2011484) | 2011484..2013085 | + | 1602 | WP_095885245.1 | phage portal protein | - |
| EXE34_RS09825 (2013066) | 2013066..2014385 | + | 1320 | WP_047662424.1 | S49 family peptidase | - |
| EXE34_RS09830 (2014395) | 2014395..2014727 | + | 333 | WP_001299443.1 | head decoration protein | - |
| EXE34_RS09835 (2014783) | 2014783..2015808 | + | 1026 | WP_159382579.1 | major capsid protein | - |
| EXE34_RS09840 (2015850) | 2015850..2016245 | + | 396 | WP_032318908.1 | DNA-packaging protein FI | - |
| EXE34_RS09845 (2016257) | 2016257..2016610 | + | 354 | WP_000753001.1 | head-tail joining protein | - |
| EXE34_RS09850 (2016622) | 2016622..2017200 | + | 579 | WP_001541219.1 | phage tail protein | - |
| EXE34_RS09855 (2017197) | 2017197..2017592 | + | 396 | WP_159382578.1 | phage minor tail U family protein | - |
| EXE34_RS09860 (2017600) | 2017600..2018340 | + | 741 | WP_001528302.1 | phage tail protein | - |
| EXE34_RS09865 (2018356) | 2018356..2018778 | + | 423 | WP_000479146.1 | phage minor tail protein G | - |
| EXE34_RS09870 (2018760) | 2018760..2019194 | + | 435 | WP_000459458.1 | phage tail assembly protein T | - |
| EXE34_RS09875 (2019187) | 2019187..2021748 | + | 2562 | WP_097518952.1 | phage tail tape measure protein | - |
| EXE34_RS09880 (2021745) | 2021745..2022074 | + | 330 | WP_000847345.1 | phage tail protein | - |
| EXE34_RS09885 (2022074) | 2022074..2022772 | + | 699 | WP_001152612.1 | phage minor tail protein L | - |
| EXE34_RS09890 (2022777) | 2022777..2023520 | + | 744 | WP_000140768.1 | C40 family peptidase | - |
| EXE34_RS09895 (2023517) | 2023517..2024089 | + | 573 | WP_000847668.1 | tail assembly protein | - |
| EXE34_RS09900 (2024150) | 2024150..2027545 | + | 3396 | WP_216284988.1 | host specificity protein J | - |
| EXE34_RS09905 (2027613) | 2027613..2028212 | + | 600 | WP_001233110.1 | Outer membrane protein X | VF |
| EXE34_RS09910 (2028277) | 2028277..2031384 | + | 3108 | WP_000279160.1 | phage tail protein | - |
| EXE34_RS09915 (2031384) | 2031384..2031959 | + | 576 | WP_000885595.1 | tail fiber assembly protein | - |
| EXE34_RS09920 (2032057) | 2032057..2032647 | - | 591 | WP_000086522.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| EXE34_RS09925 (2032964) | 2032964..2033197 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| EXE34_RS09930 (2033266) | 2033266..2033379 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| EXE34_RS09935 (2033981) | 2033981..2035264 | + | 1284 | Protein_1968 | MHS family MFS transporter YdfJ | - |
| EXE34_RS09940 (2035353) | 2035353..2036813 | + | 1461 | WP_000527813.1 | mannitol dehydrogenase family protein | - |
| EXE34_RS09945 (2036849) | 2036849..2037052 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| EXE34_RS09950 (2037229) | 2037229..2037915 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| EXE34_RS09955 (2038004) | 2038004..2038750 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|