MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 47458 bp
Accession: NZ_CP035864 Location: 1..47458 Organism: Escherichia coli strain TD225-C4 Replicon: plasmid pTD225C4_47
Accession: NZ_CP035864 Location: 1..47458 Organism: Escherichia coli strain TD225-C4 Replicon: plasmid pTD225C4_47
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXA00_RS25805 | 155..454 | + | 300 | WP_001259436.1 | XRE family transcriptional regulator | Antitoxin Detail |
| EXA00_RS25810 | 618..998 | + | 381 | WP_032154029.1 | hypothetical protein | - |
| EXA00_RS25815 | 1062..1334 | + | 273 | WP_000148347.1 | helix-turn-helix domain-containing protein | - |
| EXA00_RS25820 | 1944..2132 | + | 189 | WP_004105254.1 | hypothetical protein | - |
| EXA00_RS26430 | 2143..2769 | - | 627 | WP_231367439.1 | Rha family transcriptional regulator | - |
| EXA00_RS26435 | 2938..3411 | - | 474 | Protein_6 | ORF6N domain-containing protein | - |
| EXA00_RS25830 | 3408..3599 | - | 192 | WP_000183352.1 | hypothetical protein | - |
| EXA00_RS25835 | 4729..4977 | - | 249 | WP_000730007.1 | hypothetical protein | - |
| EXA00_RS25840 | 5021..5674 | - | 654 | WP_000156167.1 | ParA family protein | - |
| EXA00_RS25845 | 5825..6199 | - | 375 | WP_097325764.1 | hypothetical protein | - |
| EXA00_RS25850 | 6292..6954 | - | 663 | WP_000839974.1 | helix-turn-helix domain-containing protein | - |
| EXA00_RS25855 | 7127..7621 | + | 495 | WP_000143878.1 | hypothetical protein | - |
| EXA00_RS25860 | 7618..8133 | + | 516 | WP_080855625.1 | hypothetical protein | - |
| EXA00_RS25865 | 8130..8363 | + | 234 | WP_000017467.1 | hypothetical protein | - |
| EXA00_RS25870 | 8363..8767 | + | 405 | WP_001014471.1 | Ref family recombination enhancement nuclease | - |
| EXA00_RS25875 | 8764..9096 | + | 333 | WP_001270825.1 | DUF1064 domain-containing protein | - |
| EXA00_RS25880 | 9100..9477 | + | 378 | WP_001250512.1 | hypothetical protein | - |
| EXA00_RS25885 | 9648..10715 | + | 1068 | WP_216334380.1 | DUF3560 domain-containing protein | - |
| EXA00_RS25890 | 10793..11074 | + | 282 | WP_000823235.1 | hypothetical protein | - |
| EXA00_RS26440 | 11071..11262 | + | 192 | Protein_20 | hypothetical protein | - |
| EXA00_RS25900 | 11630..12148 | + | 519 | WP_244448443.1 | ead/Ea22-like family protein | - |
| EXA00_RS25905 | 12150..12359 | + | 210 | WP_023156633.1 | hypothetical protein | - |
| EXA00_RS25910 | 12356..12496 | + | 141 | Protein_23 | Eaa protein | - |
| EXA00_RS25915 | 13042..13437 | + | 396 | WP_001271967.1 | phage holin family protein | - |
| EXA00_RS25920 | 13424..13720 | + | 297 | WP_000254764.1 | phage holin family protein | - |
| EXA00_RS25925 | 13704..14249 | + | 546 | WP_024180651.1 | putative peptidoglycan-binding domain-containing protein | - |
| EXA00_RS25930 | 14246..14524 | + | 279 | WP_000147213.1 | hypothetical protein | - |
| EXA00_RS25940 | 15202..15789 | + | 588 | WP_000387271.1 | MT-A70 family methyltransferase | - |
| EXA00_RS25945 | 15901..16170 | + | 270 | WP_000867916.1 | hypothetical protein | - |
| EXA00_RS25950 | 16170..16367 | + | 198 | WP_001222808.1 | hypothetical protein | - |
| EXA00_RS25955 | 16442..16741 | + | 300 | WP_044326186.1 | hypothetical protein | - |
| EXA00_RS25960 | 16928..17080 | + | 153 | WP_001013684.1 | hypothetical protein | - |
| EXA00_RS25965 | 17128..17538 | + | 411 | WP_000412080.1 | hypothetical protein | - |
| EXA00_RS25970 | 17773..18396 | + | 624 | WP_087890066.1 | ParB/Srx family N-terminal domain-containing protein | - |
| EXA00_RS25975 | 18396..19769 | + | 1374 | WP_216334382.1 | ParB N-terminal domain-containing protein | - |
| EXA00_RS25980 | 19786..20505 | + | 720 | WP_000775053.1 | hypothetical protein | - |
| EXA00_RS25985 | 21063..21653 | + | 591 | WP_001185429.1 | ParB/Srx family N-terminal domain-containing protein | - |
| EXA00_RS25990 | 21653..22204 | + | 552 | WP_001019009.1 | hypothetical protein | - |
| EXA00_RS25995 | 22210..24066 | + | 1857 | WP_042095056.1 | phage terminase large subunit family protein | - |
| EXA00_RS26000 | 24078..24317 | + | 240 | WP_001058287.1 | DUF6148 family protein | - |
| EXA00_RS26005 | 24314..25888 | + | 1575 | WP_001022885.1 | phage portal protein | - |
| EXA00_RS26010 | 25878..26945 | + | 1068 | WP_097325768.1 | ATP-dependent Clp protease proteolytic subunit | VF |
| EXA00_RS26015 | 26955..27338 | + | 384 | WP_001209256.1 | hypothetical protein | - |
| EXA00_RS26020 | 27359..28402 | + | 1044 | WP_001132883.1 | major capsid protein | - |
| EXA00_RS26025 | 28403..28795 | + | 393 | WP_000113177.1 | hypothetical protein | - |
| EXA00_RS26030 | 28795..29139 | + | 345 | WP_001083981.1 | hypothetical protein | - |
| EXA00_RS26035 | 29136..29621 | + | 486 | WP_042095054.1 | hypothetical protein | - |
| EXA00_RS26040 | 29622..29912 | + | 291 | WP_001284547.1 | hypothetical protein | - |
| EXA00_RS26045 | 29912..31375 | + | 1464 | WP_047608080.1 | phage tail protein | - |
| EXA00_RS26050 | 31392..31913 | + | 522 | WP_000070729.1 | phage major tail tube protein | - |
| EXA00_RS26055 | 31923..32204 | + | 282 | WP_000450805.1 | phage tail assembly protein | - |
| EXA00_RS26060 | 32359..35151 | + | 2793 | WP_216334374.1 | phage tail tape measure protein | - |
| EXA00_RS26065 | 35352..36353 | + | 1002 | WP_000944895.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| EXA00_RS26070 | 36356..36976 | + | 621 | WP_000998643.1 | phage baseplate assembly protein V | - |
| EXA00_RS26075 | 36973..37440 | + | 468 | WP_000635200.1 | phage tail protein | - |
| EXA00_RS26080 | 37437..37757 | + | 321 | WP_016265986.1 | hypothetical protein | - |
| EXA00_RS26085 | 37754..38878 | + | 1125 | WP_000174657.1 | baseplate J/gp47 family protein | - |
| EXA00_RS26090 | 38871..39452 | + | 582 | WP_000763348.1 | phage tail protein I | - |
| EXA00_RS26095 | 39483..41912 | + | 2430 | WP_216334376.1 | tail fiber protein | - |
| EXA00_RS26100 | 41915..42448 | + | 534 | WP_080855689.1 | tail fiber assembly protein | - |
| EXA00_RS26105 | 42477..43004 | - | 528 | WP_096930109.1 | tail fiber assembly protein | - |
| EXA00_RS26110 | 43008..43970 | - | 963 | WP_096930111.1 | phage tail protein | - |
| EXA00_RS26115 | 44085..44639 | + | 555 | WP_047608106.1 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| EXA00_RS26120 | 44967..45803 | + | 837 | WP_001139597.1 | plasmid replication initiator RepA | - |
| EXA00_RS26125 | 46447..46734 | + | 288 | WP_216334378.1 | hypothetical protein | - |
| EXA00_RS26130 | 46758..47021 | + | 264 | WP_000424604.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|