MGE detailed information
MGE type: Prophage MGE length: 51644 bp
Accession: NZ_CP035860 Location: 2852476..2904119 Organism: Escherichia coli strain TD225-C4 Replicon: chromosome
Accession: NZ_CP035860 Location: 2852476..2904119 Organism: Escherichia coli strain TD225-C4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXA00_RS13985 (2848085) | 2848085..2848726 | + | 642 | WP_001297479.1 | high frequency lysogenization protein HflD | - |
| EXA00_RS13990 (2848730) | 2848730..2850100 | + | 1371 | WP_000423742.1 | adenylosuccinate lyase | - |
| EXA00_RS13995 (2850269) | 2850269..2850940 | + | 672 | WP_001265471.1 | two-component system response regulator PhoP | - |
| EXA00_RS14000 (2850940) | 2850940..2852400 | + | 1461 | WP_000735412.1 | two-component system sensor histidine kinase PhoQ | - |
| EXA00_RS14005 (2852476) | 2852476..2853597 | + | 1122 | WP_001295435.1 | [50S ribosomal protein L16]-arginine 3-hydroxylase | - |
| EXA00_RS14010 (2853646) | 2853646..2854872 | - | 1227 | WP_000359457.1 | peptidase T | - |
| EXA00_RS14015 (2855122) | 2855122..2856258 | + | 1137 | WP_000531601.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| EXA00_RS14020 (2856242) | 2856242..2857105 | + | 864 | WP_000799406.1 | spermidine/putrescine ABC transporter permease PotB | - |
| EXA00_RS26230 (2857337) | 2857337..2857498 | - | 162 | Protein_2749 | tail fiber assembly protein | - |
| EXA00_RS14030 (2857660) | 2857660..2858328 | + | 669 | WP_000239889.1 | class I SAM-dependent methyltransferase | - |
| EXA00_RS14035 (2858383) | 2858383..2858502 | - | 120 | Protein_2751 | tail fiber assembly protein | - |
| EXA00_RS26235 (2858823) | 2858823..2858948 | + | 126 | Protein_2752 | phage tail protein | - |
| EXA00_RS26240 (2858984) | 2858984..2859100 | - | 117 | Protein_2753 | DUF4376 domain-containing protein | - |
| EXA00_RS14040 (2859155) | 2859155..2859685 | - | 531 | WP_000423613.1 | tail fiber assembly protein | - |
| EXA00_RS14045 (2859700) | 2859700..2860809 | - | 1110 | WP_032257366.1 | hypothetical protein | - |
| EXA00_RS14050 (2860840) | 2860840..2861889 | - | 1050 | WP_032257365.1 | hypothetical protein | - |
| EXA00_RS26245 (2862303) | 2862303..2862872 | - | 570 | Protein_2757 | DUF2313 domain-containing protein | - |
| EXA00_RS14060 (2862872) | 2862872..2863954 | - | 1083 | WP_032220447.1 | baseplate J/gp47 family protein | - |
| EXA00_RS14065 (2863941) | 2863941..2864366 | - | 426 | WP_001297478.1 | phage GP46 family protein | - |
| EXA00_RS14070 (2864366) | 2864366..2864914 | - | 549 | WP_001297485.1 | phage baseplate assembly protein V | - |
| EXA00_RS14075 (2864914) | 2864914..2865993 | - | 1080 | WP_032301265.1 | baseplate protein | - |
| EXA00_RS14080 (2865990) | 2865990..2867318 | - | 1329 | WP_001297669.1 | DNA circularization N-terminal domain-containing protein | - |
| EXA00_RS14085 (2867379) | 2867379..2869214 | - | 1836 | WP_216334041.1 | phage tail tape measure protein | - |
| EXA00_RS14090 (2869356) | 2869356..2869625 | - | 270 | WP_000661054.1 | phage tail assembly protein | - |
| EXA00_RS14095 (2869625) | 2869625..2869981 | - | 357 | WP_000090998.1 | phage tail tube protein | - |
| EXA00_RS14100 (2869981) | 2869981..2871477 | - | 1497 | WP_001297496.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| EXA00_RS14105 (2871461) | 2871461..2871631 | - | 171 | WP_000497751.1 | DUF2635 domain-containing protein | - |
| EXA00_RS14110 (2871640) | 2871640..2872200 | - | 561 | WP_000779292.1 | hypothetical protein | - |
| EXA00_RS14115 (2872197) | 2872197..2872703 | - | 507 | WP_001297497.1 | hypothetical protein | - |
| EXA00_RS14120 (2872678) | 2872678..2873088 | - | 411 | WP_001297481.1 | phage head closure protein | - |
| EXA00_RS14125 (2873085) | 2873085..2873408 | - | 324 | WP_001297486.1 | head-tail connector protein | - |
| EXA00_RS14130 (2873411) | 2873411..2873611 | - | 201 | WP_001297480.1 | hypothetical protein | - |
| EXA00_RS14135 (2873661) | 2873661..2874866 | - | 1206 | WP_000257521.1 | phage major capsid protein | - |
| EXA00_RS14140 (2874881) | 2874881..2875531 | - | 651 | WP_001297492.1 | HK97 family phage prohead protease | - |
| EXA00_RS14145 (2875509) | 2875509..2876750 | - | 1242 | WP_001297667.1 | phage portal protein | - |
| EXA00_RS14150 (2876750) | 2876750..2876932 | - | 183 | WP_001297668.1 | protein YmfR | - |
| EXA00_RS14155 (2876944) | 2876944..2878674 | - | 1731 | WP_001297671.1 | terminase large subunit | - |
| EXA00_RS14160 (2878671) | 2878671..2879141 | - | 471 | WP_001297663.1 | phage terminase small subunit P27 family | - |
| EXA00_RS14165 (2879265) | 2879265..2879615 | - | 351 | WP_032303069.1 | HNH endonuclease signature motif containing protein | - |
| EXA00_RS14170 (2879958) | 2879958..2880113 | - | 156 | WP_001138287.1 | hypothetical protein | - |
| EXA00_RS14175 (2880142) | 2880142..2880255 | - | 114 | WP_001297666.1 | hypothetical protein | - |
| EXA00_RS14180 (2880388) | 2880388..2880765 | - | 378 | WP_001117825.1 | M15 family metallopeptidase | - |
| EXA00_RS14185 (2880768) | 2880768..2881043 | - | 276 | WP_216334043.1 | phage holin family protein | - |
| EXA00_RS14190 (2881033) | 2881033..2881425 | - | 393 | WP_216334045.1 | putative holin | - |
| EXA00_RS14210 (2881916) | 2881916..2882965 | - | 1050 | WP_216334046.1 | site-specific DNA-methyltransferase | - |
| EXA00_RS14215 (2883116) | 2883116..2883313 | - | 198 | WP_000917767.1 | hypothetical protein | - |
| EXA00_RS14220 (2883625) | 2883625..2884167 | - | 543 | WP_001398904.1 | DUF1133 family protein | - |
| EXA00_RS14225 (2884176) | 2884176..2884541 | - | 366 | WP_216334047.1 | RusA family crossover junction endodeoxyribonuclease | - |
| EXA00_RS14230 (2884542) | 2884542..2885600 | - | 1059 | WP_216334048.1 | DUF968 domain-containing protein | - |
| EXA00_RS14235 (2885602) | 2885602..2885874 | - | 273 | WP_072005808.1 | hypothetical protein | - |
| EXA00_RS14240 (2886010) | 2886010..2886267 | + | 258 | WP_001297790.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| EXA00_RS14245 (2886273) | 2886273..2886572 | + | 300 | WP_001297793.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| EXA00_RS14250 (2886777) | 2886777..2887040 | - | 264 | WP_216334049.1 | eaa protein | - |
| EXA00_RS26250 (2887037) | 2887037..2887159 | - | 123 | WP_077763265.1 | DUF551 domain-containing protein | - |
| EXA00_RS26255 (2887189) | 2887189..2887617 | - | 429 | Protein_2795 | DUF551 domain-containing protein | - |
| EXA00_RS14260 (2887855) | 2887855..2888310 | - | 456 | WP_032200358.1 | ead/Ea22-like family protein | - |
| EXA00_RS14265 (2888297) | 2888297..2888602 | - | 306 | WP_032200359.1 | DUF4406 domain-containing protein | - |
| EXA00_RS14270 (2888599) | 2888599..2889015 | - | 417 | WP_001409082.1 | DUF977 family protein | - |
| EXA00_RS14275 (2889030) | 2889030..2889776 | - | 747 | WP_216334050.1 | ATP-binding protein | - |
| EXA00_RS14280 (2889783) | 2889783..2890748 | - | 966 | WP_216334051.1 | hypothetical protein | - |
| EXA00_RS14285 (2890771) | 2890771..2891196 | - | 426 | WP_032207470.1 | toxin YdaT family protein | - |
| EXA00_RS14290 (2891180) | 2891180..2891452 | - | 273 | WP_000887447.1 | YdaS family helix-turn-helix protein | - |
| EXA00_RS14295 (2891562) | 2891562..2891963 | + | 402 | WP_001329851.1 | helix-turn-helix domain-containing protein | - |
| EXA00_RS14300 (2891991) | 2891991..2892182 | + | 192 | WP_000100899.1 | hypothetical protein | Antitoxin Detail |
| EXA00_RS14305 (2892182) | 2892182..2892469 | + | 288 | WP_000936798.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| EXA00_RS14310 (2892742) | 2892742..2892897 | + | 156 | WP_216334053.1 | DUF1391 family protein | - |
| EXA00_RS14315 (2893057) | 2893057..2893275 | + | 219 | WP_001171921.1 | protein YdfC | - |
| EXA00_RS14320 (2893298) | 2893298..2893903 | + | 606 | WP_216334055.1 | hypothetical protein | - |
| EXA00_RS14325 (2893881) | 2893881..2894072 | - | 192 | WP_052931385.1 | hypothetical protein | - |
| EXA00_RS14330 (2894638) | 2894638..2894826 | + | 189 | WP_000449198.1 | cell division inhibition protein DicB | - |
| EXA00_RS14335 (2894823) | 2894823..2895026 | + | 204 | WP_001532593.1 | DUF1482 family protein | - |
| EXA00_RS14340 (2895107) | 2895107..2897566 | + | 2460 | WP_216334057.1 | exonuclease | - |
| EXA00_RS14345 (2897628) | 2897628..2897897 | + | 270 | WP_000003742.1 | excisionase | - |
| EXA00_RS14350 (2897866) | 2897866..2898984 | + | 1119 | WP_000074993.1 | hypothetical protein ; Integrase | Integrase |
| EXA00_RS14355 (2899061) | 2899061..2899528 | - | 468 | WP_001113310.1 | DUF2335 domain-containing protein | - |
| EXA00_RS14360 (2899506) | 2899506..2899709 | - | 204 | WP_000824186.1 | hypothetical protein | - |
| EXA00_RS14365 (2900018) | 2900018..2900812 | + | 795 | WP_000580308.1 | spermidine/putrescine ABC transporter permease PotC | - |
| EXA00_RS14370 (2900809) | 2900809..2901855 | + | 1047 | WP_000759317.1 | spermidine/putrescine ABC transporter substrate-binding protein PotD | - |
| EXA00_RS14375 (2901913) | 2901913..2902374 | + | 462 | WP_000076381.1 | DUF3592 domain-containing protein | - |
| EXA00_RS14380 (2902371) | 2902371..2903159 | + | 789 | WP_000713472.1 | TPM domain-containing protein | - |
| EXA00_RS14385 (2903298) | 2903298..2904119 | - | 822 | WP_000952736.1 | NAD-dependent protein deacylase | - |
| EXA00_RS14390 (2904135) | 2904135..2905046 | - | 912 | WP_000291270.1 | N-acetylglucosamine kinase | - |
| EXA00_RS14395 (2905075) | 2905075..2906319 | - | 1245 | WP_001251389.1 | lipoprotein-releasing ABC transporter permease subunit LolE | - |
| EXA00_RS14400 (2906319) | 2906319..2907020 | - | 702 | WP_001033695.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| EXA00_RS14405 (2907013) | 2907013..2908212 | - | 1200 | WP_000284714.1 | lipoprotein-releasing ABC transporter permease subunit LolC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|