MGE detailed information
MGE type: Prophage MGE length: 66822 bp
Accession: NZ_CP035841 Location: 4868604..4935425 Organism: Escherichia coli strain TW10722 Replicon: chromosome
Accession: NZ_CP035841 Location: 4868604..4935425 Organism: Escherichia coli strain TW10722 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXA02_RS23875 () | 4864502..4865722 | + | 1221 | WP_000225276.1 | DNA-binding transcriptional repressor Mlc | - |
| EXA02_RS23880 () | 4865847..4866542 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| EXA02_RS23885 () | 4866495..4867787 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| EXA02_RS23890 () | 4867947..4868561 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| EXA02_RS23895 () | 4868604..4869458 | - | 855 | WP_000526492.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| EXA02_RS23900 () | 4869460..4870077 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| EXA02_RS23905 () | 4870088..4872511 | - | 2424 | WP_001340362.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| EXA02_RS23910 () | 4872572..4874998 | - | 2427 | WP_000041685.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| EXA02_RS23915 () | 4875197..4875502 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| EXA02_RS23920 () | 4875610..4876320 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| EXA02_RS23925 () | 4876323..4876883 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| EXA02_RS23930 () | 4876918..4877259 | - | 342 | WP_000705214.1 | DUF1283 family protein | - |
| EXA02_RS23935 () | 4877394..4877720 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| EXA02_RS23940 () | 4877926..4879140 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| EXA02_RS23945 () | 4879152..4880171 | + | 1020 | WP_000836079.1 | Zn-dependent oxidoreductase | - |
| EXA02_RS23950 () | 4880359..4881654 | - | 1296 | WP_001355842.1 | site-specific integrase | - |
| EXA02_RS23955 () | 4881674..4881925 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| EXA02_RS23960 () | 4881995..4884475 | - | 2481 | WP_000048591.1 | exonuclease | - |
| EXA02_RS23965 () | 4884555..4884758 | - | 204 | WP_001090551.1 | DUF1482 family protein | - |
| EXA02_RS23970 () | 4884755..4884943 | - | 189 | WP_000449194.1 | cell division inhibition protein DicB | - |
| EXA02_RS23975 () | 4885511..4885729 | - | 219 | WP_001171930.1 | protein YdfC | - |
| EXA02_RS23980 () | 4885889..4886044 | - | 156 | WP_000379589.1 | DUF1391 family protein | - |
| EXA02_RS23985 () | 4886317..4886991 | - | 675 | WP_001502049.1 | S24 family peptidase | - |
| EXA02_RS23990 () | 4887083..4887298 | + | 216 | WP_000471549.1 | Cro/CI family transcriptional regulator | - |
| EXA02_RS23995 () | 4887295..4887720 | + | 426 | WP_000693850.1 | toxin YdaT family protein | - |
| EXA02_RS24000 () | 4887792..4888862 | + | 1071 | WP_001262391.1 | DNA-binding protein | - |
| EXA02_RS24005 () | 4888903..4889325 | + | 423 | WP_001151151.1 | DUF977 family protein | - |
| EXA02_RS24015 () | 4890831..4891613 | - | 783 | WP_001317493.1 | IS21-like element IS100kyp family helper ATPase IstB | - |
| EXA02_RS24020 () | 4891610..4892632 | - | 1023 | WP_001356151.1 | IS21-like element IS100 family transposase | - |
| EXA02_RS24025 () | 4892886..4894883 | + | 1998 | WP_005032116.1 | choline BCCT transporter BetT | - |
| EXA02_RS24030 () | 4894947..4896224 | + | 1278 | WP_000625667.1 | DUF2254 domain-containing protein | - |
| EXA02_RS24035 () | 4896507..4897202 | - | 696 | WP_032190252.1 | hypothetical protein | - |
| EXA02_RS24040 () | 4897205..4897711 | - | 507 | WP_000130123.1 | hypothetical protein | - |
| EXA02_RS24045 () | 4897708..4898538 | - | 831 | WP_001399639.1 | ParA family protein | - |
| - | 4899482..4899540 | - | 59 | - | - | Antitoxin Detail |
| EXA02_RS24050 () | 4899552..4899707 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | Toxin Detail |
| EXA02_RS24055 () | 4899874..4900152 | + | 279 | WP_001410105.1 | hypothetical protein | - |
| EXA02_RS24060 () | 4900154..4901200 | + | 1047 | WP_001265103.1 | DUF968 domain-containing protein | - |
| EXA02_RS24065 () | 4901213..4901584 | + | 372 | WP_001217451.1 | RusA family crossover junction endodeoxyribonuclease | - |
| EXA02_RS24070 () | 4901574..4901927 | + | 354 | WP_000532207.1 | antiterminator Q family protein | - |
| EXA02_RS24075 () | 4902134..4903417 | - | 1284 | WP_000123148.1 | hypothetical protein | - |
| EXA02_RS24080 () | 4903673..4903867 | + | 195 | WP_001355891.1 | hypothetical protein | - |
| EXA02_RS24085 () | 4904017..4905063 | + | 1047 | WP_000799652.1 | site-specific DNA-methyltransferase | - |
| EXA02_RS24100 () | 4906133..4906525 | + | 393 | WP_001398932.1 | putative holin | - |
| EXA02_RS24105 () | 4906515..4906793 | + | 279 | WP_001398933.1 | phage holin family protein | - |
| EXA02_RS24110 () | 4906795..4907340 | + | 546 | WP_000836754.1 | glycosyl hydrolase 108 family protein | - |
| EXA02_RS24115 () | 4907560..4907673 | + | 114 | WP_001305859.1 | hypothetical protein | - |
| EXA02_RS24120 () | 4908029..4908322 | - | 294 | WP_000738421.1 | increased serum survival lipoprotein Iss | - |
| EXA02_RS24125 () | 4908683..4908877 | - | 195 | WP_001415975.1 | YlcI/YnfO family protein | - |
| EXA02_RS24130 () | 4909266..4909811 | + | 546 | WP_000453576.1 | DNA-packaging protein | - |
| EXA02_RS24135 () | 4909786..4911711 | + | 1926 | WP_001027321.1 | phage terminase large subunit family protein | - |
| EXA02_RS24140 () | 4911708..4911914 | + | 207 | WP_000198149.1 | gpW family protein | - |
| EXA02_RS24145 () | 4911911..4913512 | + | 1602 | WP_001355924.1 | phage portal protein | - |
| EXA02_RS24150 () | 4913493..4914812 | + | 1320 | WP_000123336.1 | S49 family peptidase | - |
| EXA02_RS24155 () | 4914822..4915154 | + | 333 | WP_001299443.1 | head decoration protein | - |
| EXA02_RS24160 () | 4915210..4916235 | + | 1026 | WP_000063254.1 | major capsid protein | - |
| EXA02_RS24165 () | 4916277..4916663 | + | 387 | WP_000158859.1 | DNA-packaging protein FI | - |
| EXA02_RS24170 () | 4916675..4917028 | + | 354 | WP_000752994.1 | head-tail joining protein | - |
| EXA02_RS24175 () | 4917040..4917618 | + | 579 | WP_000985130.1 | phage tail protein | - |
| EXA02_RS24180 () | 4917615..4918010 | + | 396 | WP_000683119.1 | phage minor tail U family protein | - |
| EXA02_RS24185 () | 4918018..4918758 | + | 741 | WP_001711723.1 | phage tail protein | - |
| EXA02_RS24190 () | 4918774..4919196 | + | 423 | WP_000479153.1 | phage minor tail protein G | - |
| EXA02_RS24195 () | 4919178..4919612 | + | 435 | WP_000459458.1 | phage tail assembly protein T | - |
| EXA02_RS24200 () | 4919605..4922184 | + | 2580 | WP_000840312.1 | phage tail tape measure protein | - |
| EXA02_RS24205 () | 4922181..4922510 | + | 330 | WP_000847379.1 | phage tail protein | - |
| EXA02_RS24210 () | 4922510..4923208 | + | 699 | WP_001152639.1 | phage minor tail protein L | - |
| EXA02_RS24215 () | 4923214..4923957 | + | 744 | WP_001355836.1 | C40 family peptidase | - |
| EXA02_RS24220 () | 4923921..4924496 | + | 576 | WP_126738771.1 | tail assembly protein | - |
| EXA02_RS24225 () | 4924557..4927955 | + | 3399 | WP_000515628.1 | host specificity protein J | - |
| EXA02_RS24230 () | 4927992..4928669 | + | 678 | WP_001711999.1 | IS66-like element accessory protein TnpA | - |
| EXA02_RS24235 () | 4928669..4929016 | + | 348 | WP_000624622.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| EXA02_RS24240 () | 4929036..4930607 | + | 1572 | WP_000381395.1 | IS66-like element ISCro1 family transposase | - |
| EXA02_RS24245 () | 4930727..4931326 | + | 600 | WP_001233545.1 | Ail/Lom family outer membrane beta-barrel protein | - |
| EXA02_RS24250 () | 4931391..4932992 | + | 1602 | Protein_4742 | prophage tail fiber N-terminal domain-containing protein | - |
| EXA02_RS24255 () | 4933356..4933922 | + | 567 | WP_001165996.1 | DUF4376 domain-containing protein | - |
| EXA02_RS24260 () | 4934005..4934082 | - | 78 | Protein_4744 | DinI family protein | - |
| EXA02_RS24265 () | 4934142..4935425 | + | 1284 | Protein_4745 | MHS family MFS transporter YdfJ | - |
| EXA02_RS24270 () | 4935514..4936974 | + | 1461 | WP_000527797.1 | mannitol dehydrogenase family protein | - |
| EXA02_RS24275 () | 4937010..4937213 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| EXA02_RS24280 () | 4937391..4938077 | - | 687 | WP_000215549.1 | DNA-binding transcriptional regulator rspR | - |
| EXA02_RS24285 () | 4938166..4938912 | - | 747 | WP_000636571.1 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|