MGE detailed information
MGE type: Conjugative plasmid MGE length: 72087 bp
Accession: NZ_CP035835 Location: 1..72087 Organism: Escherichia coli strain 025542-1 Replicon: plasmid p025542_72
Accession: NZ_CP035835 Location: 1..72087 Organism: Escherichia coli strain 025542-1 Replicon: plasmid p025542_72
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EXA04_RS25780 (7) | 7..354 | + | 348 | WP_000624622.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| EXA04_RS25785 (374) | 374..1945 | + | 1572 | WP_000381379.1 | IS66-like element ISCro1 family transposase | - |
| EXA04_RS25790 (2186) | 2186..2896 | - | 711 | WP_064754955.1 | conjugal transfer complement resistance protein TraT | - |
| EXA04_RS25795 (2931) | 2931..3440 | - | 510 | WP_000628099.1 | conjugal transfer entry exclusion protein TraS | - |
| EXA04_RS25800 (3437) | 3437..6262 | - | 2826 | WP_001007058.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| EXA04_RS25805 (6259) | 6259..7632 | - | 1374 | WP_001137361.1 | conjugal transfer pilus assembly protein TraH | - |
| EXA04_RS25810 (7619) | 7619..8011 | - | 393 | WP_000660703.1 | F-type conjugal transfer protein TrbF | - |
| EXA04_RS25815 (7992) | 7992..8333 | - | 342 | WP_216317331.1 | P-type conjugative transfer protein TrbJ | - |
| EXA04_RS25820 (8263) | 8263..8808 | - | 546 | WP_000059829.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| EXA04_RS25825 (8795) | 8795..9079 | - | 285 | WP_000623730.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| EXA04_RS25830 (9206) | 9206..9544 | - | 339 | WP_001287901.1 | conjugal transfer protein TrbA | - |
| EXA04_RS25835 (9560) | 9560..10303 | - | 744 | WP_001030400.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| EXA04_RS25840 (10296) | 10296..10553 | - | 258 | WP_000864345.1 | conjugal transfer protein TrbE | - |
| EXA04_RS25845 (10580) | 10580..12388 | - | 1809 | WP_000821863.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| EXA04_RS25850 (12385) | 12385..13023 | - | 639 | WP_001080257.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| EXA04_RS25855 (13032) | 13032..13337 | - | 306 | WP_000224411.1 | hypothetical protein | - |
| EXA04_RS25860 (13367) | 13367..14359 | - | 993 | WP_000830838.1 | conjugal transfer pilus assembly protein TraU | - |
| EXA04_RS25865 (14356) | 14356..14988 | - | 633 | WP_001203720.1 | type-F conjugative transfer system protein TraW | - |
| EXA04_RS25870 (14985) | 14985..15371 | - | 387 | WP_000214082.1 | type-F conjugative transfer system protein TrbI | - |
| EXA04_RS25875 (15368) | 15368..17998 | - | 2631 | WP_000069752.1 | type IV secretion system protein TraC | - |
| EXA04_RS25880 (18122) | 18122..19693 | - | 1572 | WP_000381379.1 | IS66-like element ISCro1 family transposase | - |
| EXA04_RS25885 (19713) | 19713..20060 | - | 348 | WP_000624622.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| EXA04_RS25890 (20060) | 20060..20737 | - | 678 | WP_001704819.1 | IS66-like element accessory protein TnpA | - |
| EXA04_RS25895 (20870) | 20870..21499 | - | 630 | Protein_24 | TraC family protein | - |
| EXA04_RS25900 (21625) | 21625..21972 | - | 348 | WP_000836682.1 | hypothetical protein | - |
| EXA04_RS25905 (22000) | 22000..22218 | - | 219 | WP_000556745.1 | hypothetical protein | - |
| EXA04_RS25910 (22298) | 22298..22774 | - | 477 | WP_000549587.1 | hypothetical protein | - |
| EXA04_RS25915 (22767) | 22767..22988 | - | 222 | WP_001278978.1 | conjugal transfer protein TraR | - |
| EXA04_RS25920 (23123) | 23123..23638 | - | 516 | WP_000809891.1 | type IV conjugative transfer system lipoprotein TraV | - |
| EXA04_RS25925 (23635) | 23635..23886 | - | 252 | WP_001038341.1 | conjugal transfer protein TrbG | - |
| EXA04_RS25930 (23879) | 23879..24199 | - | 321 | WP_001057302.1 | conjugal transfer protein TrbD | - |
| EXA04_RS25935 (24186) | 24186..24770 | - | 585 | WP_000002795.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| EXA04_RS25940 (24760) | 24760..26187 | - | 1428 | WP_001462160.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| EXA04_RS25945 (26187) | 26187..26915 | - | 729 | WP_001230787.1 | type-F conjugative transfer system secretin TraK | - |
| EXA04_RS25950 (26902) | 26902..27468 | - | 567 | WP_000399805.1 | type IV conjugative transfer system protein TraE | - |
| EXA04_RS25955 (27490) | 27490..27801 | - | 312 | WP_000012097.1 | type IV conjugative transfer system protein TraL | - |
| EXA04_RS25960 (27806) | 27806..28168 | - | 363 | WP_001098998.1 | type IV conjugative transfer system pilin TraA | - |
| EXA04_RS25965 (28201) | 28201..28428 | - | 228 | WP_000089263.1 | conjugal transfer relaxosome protein TraY | - |
| EXA04_RS25970 (28553) | 28553..29206 | - | 654 | WP_001342640.1 | conjugal transfer protein TraJ | - |
| EXA04_RS25975 (29397) | 29397..29780 | - | 384 | WP_001342639.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| EXA04_RS25980 (30115) | 30115..30705 | + | 591 | WP_000252684.1 | transglycosylase SLT domain-containing protein | - |
| EXA04_RS25985 (31001) | 31001..31822 | - | 822 | WP_001234437.1 | DUF932 domain-containing protein | - |
| EXA04_RS25990 (31932) | 31932..32228 | - | 297 | WP_001272251.1 | hypothetical protein | - |
| EXA04_RS25995 (32699) | 32699..32947 | - | 249 | WP_071606928.1 | hypothetical protein | - |
| EXA04_RS26000 (33213) | 33213..33455 | - | 243 | WP_000540588.1 | hypothetical protein | - |
| EXA04_RS26005 (33514) | 33514..33837 | - | 324 | WP_000533253.1 | hypothetical protein | - |
| EXA04_RS26010 (34133) | 34133..34382 | + | 250 | Protein_47 | hypothetical protein | - |
| EXA04_RS26015 (34683) | 34683..34805 | - | 123 | WP_223163518.1 | Hok/Gef family protein | - |
| EXA04_RS26550 (34750) | 34750..34863 | - | 114 | Protein_49 | DUF5431 family protein | - |
| - (34897) | 34897..35096 | + | 200 | NuclAT_0 | - | - |
| - (34897) | 34897..35096 | - | 200 | NuclAT_0 | - | - |
| - (34897) | 34897..35096 | - | 200 | NuclAT_0 | - | - |
| - (34897) | 34897..35096 | - | 200 | NuclAT_0 | - | - |
| - (34897) | 34897..35096 | - | 200 | NuclAT_0 | - | - |
| EXA04_RS26020 (35053) | 35053..35367 | - | 315 | WP_000870669.1 | hypothetical protein | - |
| EXA04_RS26025 (35364) | 35364..36083 | - | 720 | WP_000994097.1 | plasmid SOS inhibition protein A | - |
| EXA04_RS26030 (36080) | 36080..36514 | - | 435 | WP_000845966.1 | conjugation system SOS inhibitor PsiB | - |
| EXA04_RS26035 (36569) | 36569..38527 | - | 1959 | WP_001145496.1 | ParB/RepB/Spo0J family partition protein | - |
| EXA04_RS26040 (38586) | 38586..38819 | - | 234 | WP_000005975.1 | DUF905 domain-containing protein | - |
| EXA04_RS26045 (38875) | 38875..39402 | - | 528 | WP_000290816.1 | single-stranded DNA-binding protein | - |
| EXA04_RS26055 (39875) | 39875..40159 | - | 285 | WP_072165043.1 | hypothetical protein | - |
| EXA04_RS26555 (40045) | 40045..40311 | - | 267 | WP_072005681.1 | hypothetical protein | - |
| EXA04_RS26060 (40311) | 40311..40874 | - | 564 | WP_001311069.1 | class I SAM-dependent methyltransferase | - |
| EXA04_RS26065 (40921) | 40921..42282 | - | 1362 | WP_000170673.1 | DUF3560 domain-containing protein | - |
| EXA04_RS26070 (42334) | 42334..42564 | - | 231 | WP_000218642.1 | hypothetical protein | - |
| EXA04_RS26075 (43076) | 43076..43324 | + | 249 | WP_071703862.1 | hypothetical protein | - |
| EXA04_RS26560 (43228) | 43228..43458 | - | 231 | WP_071703863.1 | hypothetical protein | - |
| EXA04_RS26080 (43442) | 43442..44065 | - | 624 | WP_000088605.1 | tetracycline resistance transcriptional repressor TetR(B) | - |
| EXA04_RS26085 (44147) | 44147..45352 | + | 1206 | WP_001089068.1 | tetracycline efflux MFS transporter Tet(B) | - |
| EXA04_RS26090 (45465) | 45465..46058 | - | 594 | WP_000428546.1 | tetracyline resistance-associated transcriptional repressor TetC | - |
| EXA04_RS26095 (46378) | 46378..46569 | - | 192 | WP_001027516.1 | hypothetical protein | - |
| EXA04_RS26100 (46566) | 46566..46988 | - | 423 | WP_000271709.1 | DUF1380 family protein | - |
| EXA04_RS26105 (47035) | 47035..47460 | - | 426 | WP_001198895.1 | antirestriction protein | - |
| EXA04_RS26110 (47876) | 47876..48646 | - | 771 | WP_001006247.1 | hypothetical protein | - |
| EXA04_RS26115 (48691) | 48691..49209 | - | 519 | WP_223156508.1 | DUF1380 family protein | - |
| EXA04_RS26120 (49139) | 49139..49360 | - | 222 | WP_001104865.1 | hypothetical protein | - |
| EXA04_RS26125 (49361) | 49361..50044 | - | 684 | WP_000085884.1 | DNA methylase | - |
| EXA04_RS26130 (50121) | 50121..50432 | - | 312 | WP_032144809.1 | hypothetical protein | - |
| EXA04_RS26135 (50429) | 50429..51331 | - | 903 | WP_001513647.1 | DUF1281 domain-containing protein | - |
| EXA04_RS26565 (51426) | 51426..51695 | - | 270 | WP_072126982.1 | hypothetical protein | - |
| EXA04_RS26140 (51866) | 51866..52828 | + | 963 | WP_000959884.1 | plasmid segregation protein ParM | - |
| EXA04_RS26145 (52831) | 52831..53181 | + | 351 | WP_001414994.1 | plasmid partitioning/stability family protein | - |
| EXA04_RS26150 (53290) | 53290..53709 | + | 420 | WP_024181414.1 | hypothetical protein | - |
| EXA04_RS26155 (53644) | 53644..54525 | - | 882 | WP_000005460.1 | hypothetical protein | - |
| EXA04_RS26160 (54596) | 54596..54774 | - | 179 | Protein_80 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| EXA04_RS26165 (54846) | 54846..55124 | - | 279 | WP_001384452.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| EXA04_RS26170 (55124) | 55124..55393 | - | 270 | WP_000079945.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| EXA04_RS26175 (55466) | 55466..55606 | - | 141 | WP_000829596.1 | hypothetical protein | - |
| EXA04_RS26180 (56309) | 56309..57166 | - | 858 | WP_000130995.1 | incFII family plasmid replication initiator RepA | - |
| EXA04_RS26570 (57185) | 57185..57365 | - | 181 | Protein_85 | protein CopA/IncA | - |
| EXA04_RS26190 (57480) | 57480..57728 | - | 249 | WP_000083839.1 | replication regulatory protein RepA | - |
| EXA04_RS26195 (57968) | 57968..58558 | - | 591 | WP_000766807.1 | DUF2726 domain-containing protein | - |
| EXA04_RS26200 (58596) | 58596..58805 | - | 210 | WP_001298565.1 | hemolysin expression modulator Hha | - |
| EXA04_RS26205 (58851) | 58851..59312 | - | 462 | WP_000978821.1 | thermonuclease family protein | - |
| EXA04_RS26210 (59556) | 59556..59747 | - | 192 | WP_071528006.1 | hypothetical protein | - |
| EXA04_RS26215 (60413) | 60413..61090 | - | 678 | WP_000392235.1 | PIN domain-containing protein | - |
| EXA04_RS26220 (61377) | 61377..61589 | - | 213 | WP_001301409.1 | ANR family transcriptional regulator | - |
| EXA04_RS26225 (61708) | 61708..62268 | - | 561 | WP_000139326.1 | fertility inhibition protein FinO | - |
| EXA04_RS26230 (62323) | 62323..63069 | - | 747 | WP_000205726.1 | conjugal transfer pilus acetylase TraX | - |
| EXA04_RS26235 (63089) | 63089..68359 | - | 5271 | WP_032361711.1 | conjugative transfer relaxase/helicase TraI | - |
| EXA04_RS26240 (68359) | 68359..70575 | - | 2217 | WP_052988664.1 | type IV conjugative transfer system coupling protein TraD | - |
| EXA04_RS26245 (70626) | 70626..71363 | - | 738 | WP_000199910.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|